RNA–Protein interactions for RNA: ENST00000288022.1

PDF-201, Transcript of peptide deformylase, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDF, Length 1,158 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDF-201ENST00000288022 LMTK3Q96Q04 1460 aa38.51■■■■□ 3.76
PDF-201ENST00000288022 RNF17Q9BXT8 1623 aaKnown RBP38.49■■■■□ 3.75
PDF-201ENST00000288022 KDM5DQ9BY66 1539 aa38.48■■■■□ 3.75
PDF-201ENST00000288022 NCOA1Q15788 1441 aa38.47■■■■□ 3.75
PDF-201ENST00000288022 ERBINQ96RT1 1412 aa38.47■■■■□ 3.75
PDF-201ENST00000288022 PREX1Q8TCU6 1659 aa38.47■■■■□ 3.75
PDF-201ENST00000288022 ADGRL2O95490 1459 aa38.47■■■■□ 3.75
PDF-201ENST00000288022 WASHC2CQ9Y4E1 1318 aa38.46■■■■□ 3.75
PDF-201ENST00000288022 FAM135AQ9P2D6 1515 aa38.45■■■■□ 3.75
PDF-201ENST00000288022 ITGAEP38570 1179 aa38.43■■■■□ 3.74
PDF-201ENST00000288022 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP38.43■■■■□ 3.74
PDF-201ENST00000288022 PTPRKQ15262 1439 aa38.4■■■■□ 3.74
PDF-201ENST00000288022 UHRF1BP1Q6BDS2 1440 aa38.39■■■■□ 3.74
PDF-201ENST00000288022 NPATQ14207 1427 aa38.38■■■■□ 3.74
PDF-201ENST00000288022 SETD1BQ9UPS6 1966 aaKnown RBP38.38■■■■□ 3.73
PDF-201ENST00000288022 RRBP1Q9P2E9 1410 aaKnown RBP38.38■■■■□ 3.73
PDF-201ENST00000288022 HSPA2P54652 639 aa38.37■■■■□ 3.73
PDF-201ENST00000288022 MROH1Q8NDA8 1641 aa38.37■■■■□ 3.73
PDF-201ENST00000288022 ZC3H13Q5T200 1668 aaKnown RBP38.34■■■■□ 3.73
PDF-201ENST00000288022 ABCC3O15438 1527 aa38.33■■■■□ 3.73
PDF-201ENST00000288022 GRWD1Q9BQ67 446 aaKnown RBP eCLIP38.31■■■■□ 3.721e-7■■■■□ 21.2
PDF-201ENST00000288022 PRDM15P57071 1507 aaPredicted RBP38.29■■■■□ 3.72
PDF-201ENST00000288022 ROCK1Q13464 1354 aa38.29■■■■□ 3.72
PDF-201ENST00000288022 CEP152O94986 1710 aa38.29■■■■□ 3.72
PDF-201ENST00000288022 DEPDC5O75140 1603 aa38.28■■■■□ 3.72
PDF-201ENST00000288022 ANKRD50Q9ULJ7 1429 aa38.28■■■■□ 3.72
PDF-201ENST00000288022 PZPP20742 1482 aa38.28■■■■□ 3.72
PDF-201ENST00000288022 KANK1Q14678 1352 aa38.25■■■■□ 3.71
PDF-201ENST00000288022 FBXO31Q5XUX0 539 aaPredicted RBP38.23■■■■□ 3.71
PDF-201ENST00000288022 CAMSAP1Q5T5Y3 1602 aa38.22■■■■□ 3.71
PDF-201ENST00000288022 MYO3AQ8NEV4 1616 aa38.22■■■■□ 3.71
PDF-201ENST00000288022 TNRQ92752 1358 aa38.17■■■■□ 3.7
PDF-201ENST00000288022 ZNF142P52746 1687 aaPredicted RBP38.12■■■■□ 3.69
PDF-201ENST00000288022 CEP170BQ9Y4F5 1589 aaPredicted RBP38.12■■■■□ 3.69
PDF-201ENST00000288022 VWDEQ8N2E2 1590 aa38.1■■■■□ 3.69
PDF-201ENST00000288022 ERVK-7P63135 1459 aa38.07■■■■□ 3.68
PDF-201ENST00000288022 LMTK2Q8IWU2 1503 aa38.07■■■■□ 3.68
PDF-201ENST00000288022 SPATA31D1Q6ZQQ2 1576 aa38.06■■■■□ 3.68
PDF-201ENST00000288022 ARHGAP31Q2M1Z3 1444 aa38.05■■■■□ 3.68
PDF-201ENST00000288022 A2ML1A8K2U0 1454 aa38.05■■■■□ 3.68
PDF-201ENST00000288022 UNC13BO14795 1591 aa38.05■■■■□ 3.68
PDF-201ENST00000288022 CFAP65Q6ZU64 1925 aaKnown RBP38.04■■■■□ 3.68
PDF-201ENST00000288022 NLRP1Q9C000 1473 aa38■■■■□ 3.67
PDF-201ENST00000288022 STRCQ7RTU9 1775 aa38■■■■□ 3.67
PDF-201ENST00000288022 EFCAB6Q5THR3 1501 aa37.98■■■■□ 3.67
PDF-201ENST00000288022 GCC2Q8IWJ2 1684 aa37.95■■■■□ 3.67
PDF-201ENST00000288022 NAIPQ13075 1403 aa37.94■■■■□ 3.66
PDF-201ENST00000288022 TET3O43151 1660 aa37.93■■■■□ 3.66
PDF-201ENST00000288022 DMRT2Q9Y5R5 561 aa37.92■■■■□ 3.66
PDF-201ENST00000288022 NUP155O75694 1391 aa37.92■■■■□ 3.66
PDF-201ENST00000288022 UGGT1Q9NYU2 1555 aa37.9■■■■□ 3.66
PDF-201ENST00000288022 IQGAP3Q86VI3 1631 aa37.9■■■■□ 3.66
PDF-201ENST00000288022 PLA2R1Q13018 1463 aa37.9■■■■□ 3.66
PDF-201ENST00000288022 HFM1A2PYH4 1435 aa37.88■■■■□ 3.66
PDF-201ENST00000288022 NCKAP5LQ9HCH0 1330 aa37.87■■■■□ 3.65
PDF-201ENST00000288022 THEMISQ8N1K5 641 aaPredicted RBP37.85■■■■□ 3.65
PDF-201ENST00000288022 RPRD2Q5VT52 1461 aaKnown RBP37.84■■■■□ 3.65
PDF-201ENST00000288022 PKD2Q13563 968 aa37.81■■■■□ 3.64
PDF-201ENST00000288022 PTPRTO14522 1441 aa37.8■■■■□ 3.64
PDF-201ENST00000288022 NOS1P29475 1434 aa37.79■■■■□ 3.64
PDF-201ENST00000288022 SYNMO15061 1565 aa37.79■■■■□ 3.64
PDF-201ENST00000288022 E9PCH4 1651 aa37.78■■■■□ 3.64
PDF-201ENST00000288022 UBR1Q8IWV7 1749 aa37.76■■■■□ 3.64
PDF-201ENST00000288022 PIK3C2BO00750 1634 aa37.75■■■■□ 3.63
PDF-201ENST00000288022 POLR1AO95602 1720 aaPredicted RBP37.73■■■■□ 3.63
PDF-201ENST00000288022 TRIM52Q96A61 297 aa37.73■■■■□ 3.63
PDF-201ENST00000288022 STAG3Q9UJ98 1225 aa37.73■■■■□ 3.63
PDF-201ENST00000288022 ANKLE2Q86XL3 938 aa37.72■■■■□ 3.63
PDF-201ENST00000288022 IDI1Q13907 227 aa37.71■■■■□ 3.63
PDF-201ENST00000288022 SLC52A1Q9NWF4 448 aa37.68■■■■□ 3.62
PDF-201ENST00000288022 NEURL4Q96JN8 1562 aa37.63■■■■□ 3.62
PDF-201ENST00000288022 KDM5AP29375 1690 aaKnown RBP37.62■■■■□ 3.61
PDF-201ENST00000288022 ADGRB3O60242 1522 aa37.61■■■■□ 3.61
PDF-201ENST00000288022 SLIT1O75093 1534 aa37.57■■■■□ 3.61
PDF-201ENST00000288022 NPHP4O75161 1426 aaPredicted RBP37.56■■■■□ 3.6
PDF-201ENST00000288022 ARHGAP23Q9P227 1491 aa37.56■■■■□ 3.6
PDF-201ENST00000288022 SPHKAPQ2M3C7 1700 aa37.55■■■■□ 3.6
PDF-201ENST00000288022 TMEM2Q9UHN6 1383 aa37.55■■■■□ 3.6
PDF-201ENST00000288022 SETD5Q9C0A6 1442 aa37.54■■■■□ 3.6
PDF-201ENST00000288022 SCAF11Q99590 1463 aaKnown RBP37.54■■■■□ 3.6
PDF-201ENST00000288022 TXNDC2Q86VQ3 553 aa37.54■■■■□ 3.6
PDF-201ENST00000288022 SLC4A1APQ9BWU0 796 aaKnown RBP37.54■■■■□ 3.6
PDF-201ENST00000288022 EID1Q9Y6B2 187 aa37.54■■■■□ 3.6
PDF-201ENST00000288022 MED14O60244 1454 aa37.53■■■■□ 3.6
PDF-201ENST00000288022 CHGAP10645 457 aaKnown RBP37.52■■■■□ 3.6
PDF-201ENST00000288022 IQGAP1P46940 1657 aa37.52■■■■□ 3.6
PDF-201ENST00000288022 LTKP29376 864 aa37.5■■■■□ 3.59
PDF-201ENST00000288022 CERKQ8TCT0 537 aa37.49■■■■□ 3.59
PDF-201ENST00000288022 TMEM131LA2VDJ0 1609 aa37.48■■■■□ 3.59
PDF-201ENST00000288022 ZNF335Q9H4Z2 1342 aaPredicted RBP37.48■■■■□ 3.59
PDF-201ENST00000288022 MYO5BQ9ULV0 1848 aa37.47■■■■□ 3.59
PDF-201ENST00000288022 LTBP4Q8N2S1 1624 aa37.43■■■■□ 3.58
PDF-201ENST00000288022 RAB3GAP2Q9H2M9 1393 aa37.42■■■■□ 3.58
PDF-201ENST00000288022 ACIN1Q9UKV3 1341 aaKnown RBP37.41■■■■□ 3.58
PDF-201ENST00000288022 TRPM2O94759 1503 aa37.41■■■■□ 3.58
PDF-201ENST00000288022 MPHOSPH9Q99550 1183 aa37.37■■■■□ 3.57
PDF-201ENST00000288022 RIMS2Q9UQ26 1411 aa37.36■■■■□ 3.57
PDF-201ENST00000288022 CLTCL1P53675 1640 aa37.36■■■■□ 3.57
PDF-201ENST00000288022 HDGFP51858 240 aaKnown RBP37.35■■■■□ 3.57
PDF-201ENST00000288022 PPP1R15AO75807 674 aaPredicted RBP37.34■■■■□ 3.57
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms