RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 VGLL3A8MV65 326 aa11.88□□□□□ -0.51
PDGFC-201ENST00000274071 ZSCAN20P17040 1043 aaPredicted RBP11.87□□□□□ -0.51
PDGFC-201ENST00000274071 FAM161AQ3B820 660 aa11.87□□□□□ -0.51
PDGFC-201ENST00000274071 MTUS2Q5JR59 1369 aa11.87□□□□□ -0.51
PDGFC-201ENST00000274071 TRIM44Q96DX7 344 aaPredicted RBP11.86□□□□□ -0.51
PDGFC-201ENST00000274071 ARID3AQ99856 593 aa11.86□□□□□ -0.51
PDGFC-201ENST00000274071 TERF1P54274 439 aa11.85□□□□□ -0.51
PDGFC-201ENST00000274071 LRRIQ1Q96JM4 1722 aa11.85□□□□□ -0.51
PDGFC-201ENST00000274071 FTSJ3Q8IY81 847 aaKnown RBP11.85□□□□□ -0.51
PDGFC-201ENST00000274071 SLKQ9H2G2 1235 aaPredicted RBP11.85□□□□□ -0.51
PDGFC-201ENST00000274071 OFD1O75665 1012 aa11.85□□□□□ -0.51
PDGFC-201ENST00000274071 GRPEL1Q9HAV7 217 aa11.84□□□□□ -0.51
PDGFC-201ENST00000274071 GRIN2AQ12879 1464 aa11.84□□□□□ -0.51
PDGFC-201ENST00000274071 CHMP7Q8WUX9 453 aaPredicted RBP11.84□□□□□ -0.51
PDGFC-201ENST00000274071 KIAA0586Q9BVV6 1533 aa11.84□□□□□ -0.51
PDGFC-201ENST00000274071 ZFP91Q96JP5 570 aaPredicted RBP11.83□□□□□ -0.52
PDGFC-201ENST00000274071 RCAN3Q9UKA8 241 aa11.83□□□□□ -0.52
PDGFC-201ENST00000274071 UGGT2Q9NYU1 1516 aa11.82□□□□□ -0.52
PDGFC-201ENST00000274071 FBLN2P98095 1184 aa11.82□□□□□ -0.52
PDGFC-201ENST00000274071 ANP32BQ92688 251 aaKnown RBP11.82□□□□□ -0.52
PDGFC-201ENST00000274071 ANTXR1Q9H6X2 564 aa11.82□□□□□ -0.52
PDGFC-201ENST00000274071 MAGI1Q96QZ7 1491 aaPredicted RBP11.82□□□□□ -0.52
PDGFC-201ENST00000274071 MTERF4Q7Z6M4 381 aaKnown RBP11.81□□□□□ -0.52
PDGFC-201ENST00000274071 KIF20AO95235 890 aa11.8□□□□□ -0.52
PDGFC-201ENST00000274071 TNNT2P45379 298 aaPredicted RBP11.8□□□□□ -0.52
PDGFC-201ENST00000274071 EIF4G2P78344 907 aaKnown RBP eCLIP11.8□□□□□ -0.52
PDGFC-201ENST00000274071 SYNJ2O15056 1496 aa11.8□□□□□ -0.52
PDGFC-201ENST00000274071 FGD6Q6ZV73 1430 aa11.8□□□□□ -0.52
PDGFC-201ENST00000274071 CCDC18Q5T9S5 1454 aa11.79□□□□□ -0.52
PDGFC-201ENST00000274071 CCDC7Q96M83 1385 aa11.79□□□□□ -0.52
PDGFC-201ENST00000274071 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.79□□□□□ -0.52
PDGFC-201ENST00000274071 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.79□□□□□ -0.52
PDGFC-201ENST00000274071 DHX37Q8IY37 1157 aaKnown RBP11.79□□□□□ -0.52
PDGFC-201ENST00000274071 HECW1Q76N89 1606 aa11.78□□□□□ -0.52
PDGFC-201ENST00000274071 MCM4P33991 863 aa11.78□□□□□ -0.52
PDGFC-201ENST00000274071 R3HCC1Q9Y3T6 440 aaKnown RBP11.78□□□□□ -0.52
PDGFC-201ENST00000274071 DISP1Q96F81 1524 aa11.78□□□□□ -0.52
PDGFC-201ENST00000274071 ARID3CA6NKF2 412 aa11.78□□□□□ -0.52
PDGFC-201ENST00000274071 TRAK2O60296 914 aa11.78□□□□□ -0.52
PDGFC-201ENST00000274071 KDM2BQ8NHM5 1336 aa11.77□□□□□ -0.52
PDGFC-201ENST00000274071 PLIN1O60240 522 aa11.77□□□□□ -0.52
PDGFC-201ENST00000274071 SUPT6HQ7KZ85 1726 aaKnown RBP11.77□□□□□ -0.53
PDGFC-201ENST00000274071 KTN1Q86UP2 1357 aaKnown RBP11.77□□□□□ -0.53
PDGFC-201ENST00000274071 EPRSP07814 1512 aaKnown RBP11.77□□□□□ -0.53
PDGFC-201ENST00000274071 EHBP1L1Q8N3D4 1523 aa11.77□□□□□ -0.53
PDGFC-201ENST00000274071 USP19O94966 1318 aa11.77□□□□□ -0.53
PDGFC-201ENST00000274071 CCDC94Q9BW85 323 aaPredicted RBP11.77□□□□□ -0.53
PDGFC-201ENST00000274071 MAGI3Q5TCQ9 1506 aa11.76□□□□□ -0.53
PDGFC-201ENST00000274071 KIAA0556O60303 1618 aa11.76□□□□□ -0.53
PDGFC-201ENST00000274071 BRD2P25440 801 aaKnown RBP11.76□□□□□ -0.53
PDGFC-201ENST00000274071 BECN1Q14457 450 aa11.76□□□□□ -0.53
PDGFC-201ENST00000274071 PNISRQ8TF01 805 aaKnown RBP11.76□□□□□ -0.53
PDGFC-201ENST00000274071 SECISBP2LQ93073 1101 aaKnown RBP11.76□□□□□ -0.53
PDGFC-201ENST00000274071 CRBNQ96SW2 442 aa11.76□□□□□ -0.53
PDGFC-201ENST00000274071 GTPBP4Q9BZE4 634 aaKnown RBP11.76□□□□□ -0.53
PDGFC-201ENST00000274071 KDM5BQ9UGL1 1544 aa11.76□□□□□ -0.53
PDGFC-201ENST00000274071 CEP170Q5SW79 1584 aa11.76□□□□□ -0.53
PDGFC-201ENST00000274071 NCOA1Q15788 1441 aa11.76□□□□□ -0.53
PDGFC-201ENST00000274071 MYOM3Q5VTT5 1437 aa11.76□□□□□ -0.53
PDGFC-201ENST00000274071 UQCRHLA0A096LP55 91 aa11.76□□□□□ -0.53
PDGFC-201ENST00000274071 UQCRHP07919 91 aa11.76□□□□□ -0.53
PDGFC-201ENST00000274071 CHRM1P11229 460 aaPredicted RBP11.76□□□□□ -0.53
PDGFC-201ENST00000274071 NCBP3Q53F19 620 aaKnown RBP11.76□□□□□ -0.53
PDGFC-201ENST00000274071 ZSCAN30Q86W11 494 aa11.76□□□□□ -0.53
PDGFC-201ENST00000274071 TEX2Q8IWB9 1127 aa11.76□□□□□ -0.53
PDGFC-201ENST00000274071 ZBTB22O15209 634 aa11.75□□□□□ -0.53
PDGFC-201ENST00000274071 ISY1Q9ULR0 285 aaKnown RBP11.75□□□□□ -0.53
PDGFC-201ENST00000274071 CDK13Q14004 1512 aaKnown RBP11.75□□□□□ -0.53
PDGFC-201ENST00000274071 LETM1O95202 739 aaPredicted RBP11.74□□□□□ -0.53
PDGFC-201ENST00000274071 DYNC1I1O14576 645 aa11.73□□□□□ -0.53
PDGFC-201ENST00000274071 JPH4Q96JJ6 628 aa11.73□□□□□ -0.53
PDGFC-201ENST00000274071 CENPQQ7L2Z9 268 aaPredicted RBP11.73□□□□□ -0.53
PDGFC-201ENST00000274071 GAS2L3Q86XJ1 694 aa11.72□□□□□ -0.53
PDGFC-201ENST00000274071 ARHGEF11O15085 1522 aa11.72□□□□□ -0.53
PDGFC-201ENST00000274071 NUP160Q12769 1436 aa11.72□□□□□ -0.53
PDGFC-201ENST00000274071 MSNP26038 577 aaKnown RBP11.71□□□□□ -0.53
PDGFC-201ENST00000274071 PTPRKQ15262 1439 aa11.7□□□□□ -0.54
PDGFC-201ENST00000274071 AMER1Q5JTC6 1135 aaPredicted RBP11.7□□□□□ -0.54
PDGFC-201ENST00000274071 SEC24BO95487 1268 aa11.7□□□□□ -0.54
PDGFC-201ENST00000274071 KIF7Q2M1P5 1343 aa11.7□□□□□ -0.54
PDGFC-201ENST00000274071 RAPGEF6Q8TEU7 1601 aa11.69□□□□□ -0.54
PDGFC-201ENST00000274071 PTPN23Q9H3S7 1636 aa11.69□□□□□ -0.54
PDGFC-201ENST00000274071 NUP153P49790 1475 aaKnown RBP11.69□□□□□ -0.54
PDGFC-201ENST00000274071 CARMIL2Q6F5E8 1435 aa11.69□□□□□ -0.54
PDGFC-201ENST00000274071 CHMP4AQ9BY43 222 aa11.69□□□□□ -0.54
PDGFC-201ENST00000274071 DNTTIP2Q5QJE6 756 aaKnown RBP11.69□□□□□ -0.54
PDGFC-201ENST00000274071 PPP1R9BQ96SB3 815 aa11.69□□□□□ -0.54
PDGFC-201ENST00000274071 CDK11BP21127 795 aaKnown RBP11.68□□□□□ -0.54
PDGFC-201ENST00000274071 CBX1P83916 185 aa11.68□□□□□ -0.54
PDGFC-201ENST00000274071 TAF3Q5VWG9 929 aa11.68□□□□□ -0.54
PDGFC-201ENST00000274071 CCDC173Q0VFZ6 552 aa11.68□□□□□ -0.54
PDGFC-201ENST00000274071 TMC1Q8TDI8 760 aa11.68□□□□□ -0.54
PDGFC-201ENST00000274071 C20orf194Q5TEA3 1177 aa11.67□□□□□ -0.54
PDGFC-201ENST00000274071 RGS22Q8NE09 1264 aa11.67□□□□□ -0.54
PDGFC-201ENST00000274071 TBC1D2Q9BYX2 928 aa11.67□□□□□ -0.54
PDGFC-201ENST00000274071 CGNQ9P2M7 1197 aaKnown RBP11.67□□□□□ -0.54
PDGFC-201ENST00000274071 DHX29Q7Z478 1369 aaKnown RBP11.66□□□□□ -0.54
PDGFC-201ENST00000274071 VGFO15240 615 aaPredicted RBP11.66□□□□□ -0.54
PDGFC-201ENST00000274071 MAPK8IP2Q13387 824 aaPredicted RBP11.66□□□□□ -0.54
PDGFC-201ENST00000274071 HFM1A2PYH4 1435 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms