RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 RIMBP3BA6NNM3 1639 aa23.46■■□□□ 1.35
CCDC40-201ENST00000269318 RIMBP3Q9UFD9 1639 aa23.46■■□□□ 1.35
CCDC40-201ENST00000269318 ZNF518AQ6AHZ1 1483 aa23.46■■□□□ 1.35
CCDC40-201ENST00000269318 CCDC144AA2RUR9 1427 aa23.45■■□□□ 1.34
CCDC40-201ENST00000269318 KIDINS220Q9ULH0 1771 aa23.45■■□□□ 1.34
CCDC40-201ENST00000269318 YTHDC1Q96MU7 727 aaKnown RBP23.43■■□□□ 1.34
CCDC40-201ENST00000269318 EIF2AK4Q9P2K8 1649 aaKnown RBP23.43■■□□□ 1.34
CCDC40-201ENST00000269318 KDM5CP41229 1560 aa23.43■■□□□ 1.34
CCDC40-201ENST00000269318 DHX29Q7Z478 1369 aaKnown RBP23.42■■□□□ 1.34
CCDC40-201ENST00000269318 POGZQ7Z3K3 1410 aa23.42■■□□□ 1.34
CCDC40-201ENST00000269318 WASHC2AQ641Q2 1341 aa23.41■■□□□ 1.34
CCDC40-201ENST00000269318 VWDEQ8N2E2 1590 aa23.41■■□□□ 1.34
CCDC40-201ENST00000269318 CYB5RLQ6IPT4 315 aa23.4■■□□□ 1.34
CCDC40-201ENST00000269318 RALGAPBQ86X10 1494 aa23.4■■□□□ 1.34
CCDC40-201ENST00000269318 NEO1Q92859 1461 aa23.39■■□□□ 1.34
CCDC40-201ENST00000269318 E9PCH4 1651 aa23.38■■□□□ 1.33
CCDC40-201ENST00000269318 MROH1Q8NDA8 1641 aa23.37■■□□□ 1.33
CCDC40-201ENST00000269318 PRDM15P57071 1507 aaPredicted RBP23.37■■□□□ 1.33
CCDC40-201ENST00000269318 MLH3Q9UHC1 1453 aa23.36■■□□□ 1.33
CCDC40-201ENST00000269318 MAP3K4Q9Y6R4 1608 aa23.36■■□□□ 1.33
CCDC40-201ENST00000269318 TET3O43151 1660 aa23.35■■□□□ 1.33
CCDC40-201ENST00000269318 ZNF326Q5BKZ1 582 aaKnown RBP23.35■■□□□ 1.33
CCDC40-201ENST00000269318 GLI2P10070 1586 aa23.34■■□□□ 1.33
CCDC40-201ENST00000269318 MYT1LQ9UL68 1186 aa23.34■■□□□ 1.33
CCDC40-201ENST00000269318 C11orf95C9JLR9 678 aaPredicted RBP23.34■■□□□ 1.33
CCDC40-201ENST00000269318 DCAF11Q8TEB1 546 aa23.34■■□□□ 1.33
CCDC40-201ENST00000269318 HECW2Q9P2P5 1572 aa23.33■■□□□ 1.33
CCDC40-201ENST00000269318 A2MP01023 1474 aa23.33■■□□□ 1.32
CCDC40-201ENST00000269318 KIF3BO15066 747 aa23.32■■□□□ 1.32
CCDC40-201ENST00000269318 CCDC7Q96M83 1385 aa23.32■■□□□ 1.32
CCDC40-201ENST00000269318 PTPRTO14522 1441 aa23.32■■□□□ 1.32
CCDC40-201ENST00000269318 KANK1Q14678 1352 aa23.32■■□□□ 1.32
CCDC40-201ENST00000269318 USP47Q96K76 1375 aa23.32■■□□□ 1.32
CCDC40-201ENST00000269318 POLR1AO95602 1720 aaPredicted RBP23.31■■□□□ 1.32
CCDC40-201ENST00000269318 TRPM2O94759 1503 aa23.31■■□□□ 1.32
CCDC40-201ENST00000269318 KDM2AQ9Y2K7 1162 aa23.31■■□□□ 1.32
CCDC40-201ENST00000269318 PRAG1Q86YV5 1406 aa23.3■■□□□ 1.32
CCDC40-201ENST00000269318 FRMPD1Q5SYB0 1578 aa23.29■■□□□ 1.32
CCDC40-201ENST00000269318 ANP32CO43423 234 aa23.29■■□□□ 1.32
CCDC40-201ENST00000269318 RNF17Q9BXT8 1623 aaKnown RBP23.28■■□□□ 1.32
CCDC40-201ENST00000269318 SCAF1Q9H7N4 1312 aaKnown RBP23.28■■□□□ 1.32
CCDC40-201ENST00000269318 SPHKAPQ2M3C7 1700 aa23.28■■□□□ 1.32
CCDC40-201ENST00000269318 TRPM1Q7Z4N2 1603 aa23.26■■□□□ 1.31
CCDC40-201ENST00000269318 ABCA6Q8N139 1617 aa23.26■■□□□ 1.31
CCDC40-201ENST00000269318 CNTLNQ9NXG0 1405 aa23.25■■□□□ 1.31
CCDC40-201ENST00000269318 RGL3Q3MIN7 710 aa23.25■■□□□ 1.31
CCDC40-201ENST00000269318 KIF7Q2M1P5 1343 aa23.25■■□□□ 1.31
CCDC40-201ENST00000269318 CCER2I3L3R5 266 aa23.25■■□□□ 1.31
CCDC40-201ENST00000269318 LMTK2Q8IWU2 1503 aa23.25■■□□□ 1.31
CCDC40-201ENST00000269318 BCORL1Q5H9F3 1711 aa23.24■■□□□ 1.31
CCDC40-201ENST00000269318 DIP2BQ9P265 1576 aa23.24■■□□□ 1.31
CCDC40-201ENST00000269318 CARD11Q9BXL7 1154 aa23.23■■□□□ 1.31
CCDC40-201ENST00000269318 RICTORQ6R327 1708 aa23.23■■□□□ 1.31
CCDC40-201ENST00000269318 EFCAB6Q5THR3 1501 aa23.22■■□□□ 1.31
CCDC40-201ENST00000269318 CLTCL1P53675 1640 aa23.22■■□□□ 1.31
CCDC40-201ENST00000269318 CEP152O94986 1710 aa23.22■■□□□ 1.31
CCDC40-201ENST00000269318 RAPGEF3O95398 923 aa23.21■■□□□ 1.31
CCDC40-201ENST00000269318 ROCK2O75116 1388 aaKnown RBP23.2■■□□□ 1.3
CCDC40-201ENST00000269318 PPRC1Q5VV67 1664 aaKnown RBP23.19■■□□□ 1.3
CCDC40-201ENST00000269318 GPRASP1Q5JY77 1395 aa23.19■■□□□ 1.3
CCDC40-201ENST00000269318 DIP2CQ9Y2E4 1556 aa23.18■■□□□ 1.3
CCDC40-201ENST00000269318 LAMC1P11047 1609 aa23.17■■□□□ 1.3
CCDC40-201ENST00000269318 NEURL4Q96JN8 1562 aa23.17■■□□□ 1.3
CCDC40-201ENST00000269318 ARID4BQ4LE39 1312 aaPredicted RBP23.16■■□□□ 1.3
CCDC40-201ENST00000269318 FAM69CQ0P6D2 419 aa23.15■■□□□ 1.3
CCDC40-201ENST00000269318 NBPF1Q3BBV0 1214 aa23.12■■□□□ 1.29
CCDC40-201ENST00000269318 MADDQ8WXG6 1647 aa23.12■■□□□ 1.29
CCDC40-201ENST00000269318 ST20-MTHFSA0A0A6YYL1 179 aa23.11■■□□□ 1.29
CCDC40-201ENST00000269318 ZMYM4Q5VZL5 1548 aa23.1■■□□□ 1.29
CCDC40-201ENST00000269318 ABCC3O15438 1527 aa23.1■■□□□ 1.29
CCDC40-201ENST00000269318 UGGT1Q9NYU2 1555 aa23.09■■□□□ 1.29
CCDC40-201ENST00000269318 YEATS2Q9ULM3 1422 aa23.09■■□□□ 1.29
CCDC40-201ENST00000269318 STAC3Q96MF2 364 aa23.09■■□□□ 1.29
CCDC40-201ENST00000269318 NPATQ14207 1427 aa23.08■■□□□ 1.28
CCDC40-201ENST00000269318 GGT6Q6P531 493 aa23.07■■□□□ 1.28
CCDC40-201ENST00000269318 GTF3C3Q9Y5Q9 886 aa23.07■■□□□ 1.28
CCDC40-201ENST00000269318 TSPOAP1O95153 1857 aa23.03■■□□□ 1.28
CCDC40-201ENST00000269318 KIF1BO60333 1816 aa23.03■■□□□ 1.28
CCDC40-201ENST00000269318 PRKRIP1Q9H875 184 aaPredicted RBP23.03■■□□□ 1.28
CCDC40-201ENST00000269318 CAMSAP1Q5T5Y3 1602 aa23.03■■□□□ 1.28
CCDC40-201ENST00000269318 WASHC2CQ9Y4E1 1318 aa23.02■■□□□ 1.28
CCDC40-201ENST00000269318 MROH2AA6NES4 1674 aa23■■□□□ 1.27
CCDC40-201ENST00000269318 MYOM2P54296 1465 aa23■■□□□ 1.27
CCDC40-201ENST00000269318 ADGRB3O60242 1522 aa23■■□□□ 1.27
CCDC40-201ENST00000269318 IFT172Q9UG01 1749 aa22.99■■□□□ 1.27
CCDC40-201ENST00000269318 ZC3H13Q5T200 1668 aaKnown RBP22.99■■□□□ 1.27
CCDC40-201ENST00000269318 KIAA1210Q9ULL0 1709 aa22.98■■□□□ 1.27
CCDC40-201ENST00000269318 KIF13AQ9H1H9 1805 aa22.97■■□□□ 1.27
CCDC40-201ENST00000269318 IQGAP1P46940 1657 aa22.97■■□□□ 1.27
CCDC40-201ENST00000269318 NOS1P29475 1434 aa22.97■■□□□ 1.27
CCDC40-201ENST00000269318 TESK2Q96S53 571 aa22.97■■□□□ 1.27
CCDC40-201ENST00000269318 POLR3GLQ9BT43 218 aa22.97■■□□□ 1.27
CCDC40-201ENST00000269318 ARHGAP31Q2M1Z3 1444 aa22.97■■□□□ 1.27
CCDC40-201ENST00000269318 SIGLEC1Q9BZZ2 1709 aa22.96■■□□□ 1.27
CCDC40-201ENST00000269318 COL17A1Q9UMD9 1497 aaPredicted RBP22.96■■□□□ 1.27
CCDC40-201ENST00000269318 REREQ9P2R6 1566 aa22.95■■□□□ 1.26
CCDC40-201ENST00000269318 NRXN1Q9ULB1 1477 aa22.94■■□□□ 1.26
CCDC40-201ENST00000269318 PIK3C2BO00750 1634 aa22.92■■□□□ 1.26
CCDC40-201ENST00000269318 SYNMO15061 1565 aa22.91■■□□□ 1.26
CCDC40-201ENST00000269318 SCAF11Q99590 1463 aaKnown RBP22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms