RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 YEATS2Q9ULM3 1422 aa32.82■■■□□ 2.84
CDX1-201ENST00000231656 MAGI2Q86UL8 1455 aa32.82■■■□□ 2.84
CDX1-201ENST00000231656 EIF2AK4Q9P2K8 1649 aaKnown RBP32.82■■■□□ 2.84
CDX1-201ENST00000231656 SLC4A1APQ9BWU0 796 aaKnown RBP32.8■■■□□ 2.84
CDX1-201ENST00000231656 DIEXFQ68CQ4 756 aaKnown RBP32.78■■■□□ 2.84
CDX1-201ENST00000231656 SIN3AQ96ST3 1273 aa32.76■■■□□ 2.84
CDX1-201ENST00000231656 DEPDC5O75140 1603 aa32.76■■■□□ 2.83
CDX1-201ENST00000231656 KIF3BO15066 747 aa32.74■■■□□ 2.83
CDX1-201ENST00000231656 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.74■■■□□ 2.83
CDX1-201ENST00000231656 FAM135AQ9P2D6 1515 aa32.72■■■□□ 2.83
CDX1-201ENST00000231656 IQGAP3Q86VI3 1631 aa32.72■■■□□ 2.83
CDX1-201ENST00000231656 BCORL1Q5H9F3 1711 aa32.7■■■□□ 2.83
CDX1-201ENST00000231656 TIMELESSQ9UNS1 1208 aa32.7■■■□□ 2.82
CDX1-201ENST00000231656 ATP10AO60312 1499 aa32.68■■■□□ 2.82
CDX1-201ENST00000231656 FOXD1Q16676 465 aa32.68■■■□□ 2.82
CDX1-201ENST00000231656 MROH1Q8NDA8 1641 aa32.67■■■□□ 2.82
CDX1-201ENST00000231656 RNF17Q9BXT8 1623 aaKnown RBP32.67■■■□□ 2.82
CDX1-201ENST00000231656 NEUROD1Q13562 356 aa32.66■■■□□ 2.82
CDX1-201ENST00000231656 PKD2Q13563 968 aa32.66■■■□□ 2.82
CDX1-201ENST00000231656 PRDM15P57071 1507 aaPredicted RBP32.65■■■□□ 2.82
CDX1-201ENST00000231656 ARHGEF40Q8TER5 1519 aa32.65■■■□□ 2.82
CDX1-201ENST00000231656 REREQ9P2R6 1566 aa32.63■■■□□ 2.81
CDX1-201ENST00000231656 VWDEQ8N2E2 1590 aa32.62■■■□□ 2.81
CDX1-201ENST00000231656 KANK1Q14678 1352 aa32.6■■■□□ 2.81
CDX1-201ENST00000231656 ANKRD30BQ9BXX2 1392 aa32.59■■■□□ 2.81
CDX1-201ENST00000231656 GGT6Q6P531 493 aa32.55■■■□□ 2.8
CDX1-201ENST00000231656 SIGLEC1Q9BZZ2 1709 aa32.53■■■□□ 2.8
CDX1-201ENST00000231656 AGLP35573 1532 aa32.53■■■□□ 2.8
CDX1-201ENST00000231656 TET3O43151 1660 aa32.52■■■□□ 2.8
CDX1-201ENST00000231656 CEP152O94986 1710 aa32.49■■■□□ 2.79
CDX1-201ENST00000231656 E9PCH4 1651 aa32.48■■■□□ 2.79
CDX1-201ENST00000231656 LMTK2Q8IWU2 1503 aa32.47■■■□□ 2.79
CDX1-201ENST00000231656 TONSLQ96HA7 1378 aa32.47■■■□□ 2.79
CDX1-201ENST00000231656 PPP1R15AO75807 674 aaPredicted RBP32.47■■■□□ 2.79
CDX1-201ENST00000231656 ABCC3O15438 1527 aa32.42■■■□□ 2.78
CDX1-201ENST00000231656 EFCAB6Q5THR3 1501 aa32.42■■■□□ 2.78
CDX1-201ENST00000231656 RPRD2Q5VT52 1461 aaKnown RBP32.42■■■□□ 2.78
CDX1-201ENST00000231656 WASHC2CQ9Y4E1 1318 aa32.42■■■□□ 2.78
CDX1-201ENST00000231656 ZC3H13Q5T200 1668 aaKnown RBP32.39■■■□□ 2.78
CDX1-201ENST00000231656 PLA2R1Q13018 1463 aa32.39■■■□□ 2.78
CDX1-201ENST00000231656 CAMSAP1Q5T5Y3 1602 aa32.36■■■□□ 2.77
CDX1-201ENST00000231656 SPHKAPQ2M3C7 1700 aa32.34■■■□□ 2.77
CDX1-201ENST00000231656 PPP6R1Q9UPN7 881 aa32.32■■■□□ 2.77
CDX1-201ENST00000231656 PTPRTO14522 1441 aa32.31■■■□□ 2.76
CDX1-201ENST00000231656 CCDC144AA2RUR9 1427 aa32.3■■■□□ 2.76
CDX1-201ENST00000231656 ARID4BQ4LE39 1312 aaPredicted RBP32.3■■■□□ 2.76
CDX1-201ENST00000231656 NPATQ14207 1427 aa32.3■■■□□ 2.76
CDX1-201ENST00000231656 MLECQ14165 292 aa32.3■■■□□ 2.76
CDX1-201ENST00000231656 TRPM2O94759 1503 aa32.28■■■□□ 2.76
CDX1-201ENST00000231656 CFAP65Q6ZU64 1925 aaKnown RBP32.28■■■□□ 2.76
CDX1-201ENST00000231656 ARHGAP31Q2M1Z3 1444 aa32.25■■■□□ 2.75
CDX1-201ENST00000231656 CLTCQ00610 1675 aaKnown RBP32.24■■■□□ 2.75
CDX1-201ENST00000231656 MIER1Q8N108 512 aa32.21■■■□□ 2.75
CDX1-201ENST00000231656 L3MBTL2Q969R5 705 aa32.21■■■□□ 2.75
CDX1-201ENST00000231656 CLTCL1P53675 1640 aa32.19■■■□□ 2.74
CDX1-201ENST00000231656 NOS1P29475 1434 aa32.15■■■□□ 2.74
CDX1-201ENST00000231656 CNTLNQ9NXG0 1405 aa32.14■■■□□ 2.74
CDX1-201ENST00000231656 ESF1Q9H501 851 aaKnown RBP32.14■■■□□ 2.74
CDX1-201ENST00000231656 UGGT1Q9NYU2 1555 aa32.13■■■□□ 2.73
CDX1-201ENST00000231656 PREX1Q8TCU6 1659 aa32.12■■■□□ 2.73
CDX1-201ENST00000231656 SYNMO15061 1565 aa32.09■■■□□ 2.73
CDX1-201ENST00000231656 SPATA31E1Q6ZUB1 1445 aa32.07■■■□□ 2.72
CDX1-201ENST00000231656 KIF1BO60333 1816 aa32.06■■■□□ 2.72
CDX1-201ENST00000231656 ZMYM3Q14202 1370 aa32.06■■■□□ 2.72
CDX1-201ENST00000231656 RGL3Q3MIN7 710 aa32.05■■■□□ 2.72
CDX1-201ENST00000231656 MROH2AA6NES4 1674 aa32.05■■■□□ 2.72
CDX1-201ENST00000231656 ERVK-7P63135 1459 aa32.05■■■□□ 2.72
CDX1-201ENST00000231656 FBXO31Q5XUX0 539 aaPredicted RBP32.04■■■□□ 2.72
CDX1-201ENST00000231656 PIK3C2BO00750 1634 aa32.04■■■□□ 2.72
CDX1-201ENST00000231656 FER1L4A9Z1Z3 1794 aa32.04■■■□□ 2.72
CDX1-201ENST00000231656 NEURL4Q96JN8 1562 aa32.01■■■□□ 2.71
CDX1-201ENST00000231656 SPATA31D1Q6ZQQ2 1576 aa32■■■□□ 2.71
CDX1-201ENST00000231656 DCAF11Q8TEB1 546 aa31.99■■■□□ 2.71
CDX1-201ENST00000231656 NBPF8Q3BBV2 869 aa31.96■■■□□ 2.71
CDX1-201ENST00000231656 HIRIP3Q9BW71 556 aaPredicted RBP31.96■■■□□ 2.71
CDX1-201ENST00000231656 SLC52A1Q9NWF4 448 aa31.96■■■□□ 2.71
CDX1-201ENST00000231656 ADGRB3O60242 1522 aa31.94■■■□□ 2.7
CDX1-201ENST00000231656 KDM2AQ9Y2K7 1162 aa31.94■■■□□ 2.7
CDX1-201ENST00000231656 IDI1Q13907 227 aa31.94■■■□□ 2.7
CDX1-201ENST00000231656 UHRF1BP1Q6BDS2 1440 aa31.92■■■□□ 2.7
CDX1-201ENST00000231656 C3P01024 1663 aa31.91■■■□□ 2.7
CDX1-201ENST00000231656 MADDQ8WXG6 1647 aa31.91■■■□□ 2.7
CDX1-201ENST00000231656 CHGAP10645 457 aaKnown RBP31.9■■■□□ 2.7
CDX1-201ENST00000231656 ADAMTSL3P82987 1691 aa31.89■■■□□ 2.7
CDX1-201ENST00000231656 ZNF326Q5BKZ1 582 aaKnown RBP31.89■■■□□ 2.7
CDX1-201ENST00000231656 CEBPAP49715 358 aaPredicted RBP31.85■■■□□ 2.69
CDX1-201ENST00000231656 DDX10Q13206 875 aaKnown RBP31.85■■■□□ 2.69
CDX1-201ENST00000231656 PRAG1Q86YV5 1406 aa31.85■■■□□ 2.69
CDX1-201ENST00000231656 IFT172Q9UG01 1749 aa31.84■■■□□ 2.69
CDX1-201ENST00000231656 RIMS1Q86UR5 1692 aaKnown RBP31.84■■■□□ 2.69
CDX1-201ENST00000231656 TMEM131LA2VDJ0 1609 aa31.84■■■□□ 2.69
CDX1-201ENST00000231656 MYO5BQ9ULV0 1848 aa31.84■■■□□ 2.69
CDX1-201ENST00000231656 HSPA5P11021 654 aaKnown RBP31.83■■■□□ 2.69
CDX1-201ENST00000231656 STAC3Q96MF2 364 aa31.83■■■□□ 2.69
CDX1-201ENST00000231656 TNRQ92752 1358 aa31.82■■■□□ 2.69
CDX1-201ENST00000231656 EIF4G2P78344 907 aaKnown RBP eCLIP31.8■■■□□ 2.68
CDX1-201ENST00000231656 PPLO60437 1756 aa31.79■■■□□ 2.68
CDX1-201ENST00000231656 RALGAPBQ86X10 1494 aa31.77■■■□□ 2.68
CDX1-201ENST00000231656 CENPBP07199 599 aaPredicted RBP31.77■■■□□ 2.68
CDX1-201ENST00000231656 RPGRIP1LQ68CZ1 1315 aa31.77■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 128.5 ms