RNA–Protein interactions for RNA: snR55

snR55, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR55, Length 98 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR55	snR55	ARO3	P14843	370 aa	Known RBP	0.45	□□□□□ -2.34
snR55	snR55	RPB9	P27999	122 aa		0.45	□□□□□ -2.34
snR55	snR55	UTP9	P38882	575 aa	Known RBP	0.45	□□□□□ -2.34
snR55	snR55	STN1	P38960	494 aa		0.45	□□□□□ -2.34
snR55	snR55	ARF3	P40994	183 aa	RIP-Chip data	0.45	□□□□□ -2.34	not detected
snR55	snR55	YCH1	P42937	148 aa		0.45	□□□□□ -2.34
snR55	snR55	TOM22	P49334	152 aa		0.45	□□□□□ -2.34
snR55	snR55	SLT2	Q00772	484 aa		0.45	□□□□□ -2.34
snR55	snR55	PRP42	Q03776	544 aa	Known RBP	0.45	□□□□□ -2.34
snR55	snR55	ECM19	Q06011	112 aa		0.45	□□□□□ -2.34
snR55	snR55	YDL109C	Q12103	647 aa		0.45	□□□□□ -2.34
snR55	snR55	YPR063C	Q12160	140 aa		0.45	□□□□□ -2.34
snR55	snR55	RPL23A	P0CX41	137 aa	Known RBP	0.44	□□□□□ -2.34
snR55	snR55	RPL23B	P0CX42	137 aa	Known RBP	0.44	□□□□□ -2.34
snR55	snR55	MIR1	P23641	311 aa	Known RBP	0.44	□□□□□ -2.34
snR55	snR55	AIM23	P47015	356 aa		0.44	□□□□□ -2.34
snR55	snR55	PMT5	P52867	743 aa		0.44	□□□□□ -2.34
snR55	snR55	SCS7	Q03529	384 aa		0.44	□□□□□ -2.34
snR55	snR55	ACL4	Q03771	387 aa		0.44	□□□□□ -2.34
snR55	snR55	YMR130W	Q04223	302 aa		0.44	□□□□□ -2.34
snR55	snR55	PEX30	Q06169	523 aa		0.44	□□□□□ -2.34
snR55	snR55	DXO1	Q06349	442 aa		0.44	□□□□□ -2.34
snR55	snR55	MMT2	Q08970	484 aa		0.44	□□□□□ -2.34
snR55	snR55	RNH203	Q12338	110 aa		0.44	□□□□□ -2.34
snR55	snR55	TPK3	P05986	398 aa		0.43	□□□□□ -2.34
snR55	snR55	RPS14A	P06367	137 aa	Known RBP	0.43	□□□□□ -2.34
snR55	snR55	RSA4	P25382	515 aa	Known RBP	0.43	□□□□□ -2.34
snR55	snR55	RPL16A	P26784	199 aa	Known RBP	0.43	□□□□□ -2.34
snR55	snR55	IMP2'	P32351	346 aa		0.43	□□□□□ -2.34
snR55	snR55	ASC1	P38011	319 aa	Known RBP	0.43	□□□□□ -2.34
snR55	snR55	INM1	P38710	295 aa		0.43	□□□□□ -2.34
snR55	snR55	RPS14B	P39516	138 aa	Known RBP	0.43	□□□□□ -2.34
snR55	snR55	SEC27	P41811	889 aa	Known RBP	0.43	□□□□□ -2.34
snR55	snR55	FEX1	Q08913	375 aa		0.43	□□□□□ -2.34
snR55	snR55	FEX2	Q08991	375 aa		0.43	□□□□□ -2.34
snR55	snR55	SGT2	Q12118	346 aa	Known RBP	0.43	□□□□□ -2.34
snR55	snR55	RUP1	Q12242	671 aa		0.43	□□□□□ -2.34
snR55	snR55	OPI3	P05375	206 aa		0.42	□□□□□ -2.34
snR55	snR55	CDC21	P06785	304 aa		0.42	□□□□□ -2.34
snR55	snR55	CKA1	P15790	372 aa		0.42	□□□□□ -2.34
snR55	snR55	YEL043W	P32618	956 aa		0.42	□□□□□ -2.34
snR55	snR55	ATM1	P40416	690 aa		0.42	□□□□□ -2.34
snR55	snR55	BUD13	P46947	266 aa	Predicted RBP	0.42	□□□□□ -2.34
snR55	snR55	ASG7	P46993	209 aa		0.42	□□□□□ -2.34
snR55	snR55	YMR010W	Q03687	405 aa		0.42	□□□□□ -2.34
snR55	snR55	YDR114C	Q04597	100 aa		0.42	□□□□□ -2.34
snR55	snR55	DON1	Q05610	365 aa		0.42	□□□□□ -2.34
snR55	snR55	DIB1	Q06819	143 aa	Predicted RBP	0.42	□□□□□ -2.34
snR55	snR55	YPL264C	Q08980	353 aa		0.42	□□□□□ -2.34
snR55	snR55	DFM1	Q12743	341 aa	Known RBP	0.42	□□□□□ -2.34
snR55	snR55	MTR10	Q99189	972 aa		0.42	□□□□□ -2.34
snR55	snR55	RPL12A	P0CX53	165 aa	Known RBP	0.41	□□□□□ -2.34
snR55	snR55	RPL12B	P0CX54	165 aa		0.41	□□□□□ -2.34
snR55	snR55	CTA1	P15202	515 aa		0.41	□□□□□ -2.34
snR55	snR55	BGL2	P15703	313 aa	Known RBP	0.41	□□□□□ -2.34
snR55	snR55	RRG9	P40156	214 aa		0.41	□□□□□ -2.34
snR55	snR55	IRC6	P43615	237 aa		0.41	□□□□□ -2.34
snR55	snR55	YNL095C	P53932	642 aa		0.41	□□□□□ -2.34
snR55	snR55	PRP3	Q03338	469 aa	Predicted RBP	0.41	□□□□□ -2.34
snR55	snR55	UTP15	Q04305	513 aa	Known RBP	0.41	□□□□□ -2.34
snR55	snR55	CSI1	Q04368	295 aa		0.41	□□□□□ -2.34
snR55	snR55	MYO5	Q04439	1219 aa	Known RBP	0.41	□□□□□ -2.34
snR55	snR55	MMR1	Q06324	491 aa		0.41	□□□□□ -2.34
snR55	snR55	ARR1	Q06596	294 aa		0.41	□□□□□ -2.34
snR55	snR55	GAT3	Q07928	141 aa		0.41	□□□□□ -2.34
snR55	snR55	YOR283W	Q12040	230 aa	Known RBP	0.41	□□□□□ -2.34
snR55	snR55	CLB3	P24870	427 aa		0.4	□□□□□ -2.35
snR55	snR55	DPB3	P27344	201 aa		0.4	□□□□□ -2.35
snR55	snR55	MED8	P38304	223 aa		0.4	□□□□□ -2.35
snR55	snR55	EFM3	P47163	339 aa		0.4	□□□□□ -2.35
snR55	snR55	CWC22	P53333	577 aa	Known RBP	0.4	□□□□□ -2.35
snR55	snR55	RPT4	P53549	437 aa	Known RBP	0.4	□□□□□ -2.35
snR55	snR55	SVL3	Q03088	825 aa	Known RBP	0.4	□□□□□ -2.35
snR55	snR55	CGI121	Q03705	181 aa	Known RBP	0.4	□□□□□ -2.35
snR55	snR55	GAS2	Q06135	555 aa		0.4	□□□□□ -2.35
snR55	snR55	SLM3	Q12093	417 aa		0.4	□□□□□ -2.35
snR55	snR55	INO2	P26798	304 aa		0.39	□□□□□ -2.35
snR55	snR55	SSE1	P32589	693 aa	Known RBP	0.39	□□□□□ -2.35
snR55	snR55	OLA1	P38219	394 aa	Known RBP	0.39	□□□□□ -2.35
snR55	snR55	TAE1	P38340	232 aa		0.39	□□□□□ -2.35
snR55	snR55	YFR045W	P43617	309 aa		0.39	□□□□□ -2.35
snR55	snR55	YMR244W	Q04018	355 aa		0.39	□□□□□ -2.35
snR55	snR55	TFC7	Q12415	435 aa		0.39	□□□□□ -2.35
snR55	snR55	PGA3	Q12746	312 aa	Known RBP	0.39	□□□□□ -2.35
snR55	snR55	ARF1	P11076	181 aa	Known RBP	0.38	□□□□□ -2.35
snR55	snR55	SLM5	P25345	492 aa	Known RBP	0.38	□□□□□ -2.35
snR55	snR55	HSP104	P31539	908 aa	Known RBP	0.38	□□□□□ -2.35
snR55	snR55	ERG3	P32353	365 aa		0.38	□□□□□ -2.35
snR55	snR55	ARO4	P32449	370 aa	Known RBP	0.38	□□□□□ -2.35
snR55	snR55	ZRT3	P34240	503 aa		0.38	□□□□□ -2.35
snR55	snR55	DOA1	P36037	715 aa		0.38	□□□□□ -2.35
snR55	snR55	RCK1	P38622	512 aa		0.38	□□□□□ -2.35
snR55	snR55	POP2	P39008	433 aa		0.38	□□□□□ -2.35
snR55	snR55	YER188W	P40103	239 aa		0.38	□□□□□ -2.35
snR55	snR55	URC2	Q04411	772 aa		0.38	□□□□□ -2.35
snR55	snR55	ROY1	Q04847	553 aa		0.38	□□□□□ -2.35
snR55	snR55	MED2	Q12124	431 aa		0.38	□□□□□ -2.35
snR55	snR55	TFS1	P14306	219 aa		0.37	□□□□□ -2.35
snR55	snR55	BYE1	P36106	594 aa		0.37	□□□□□ -2.35
snR55	snR55	NRG2	P38082	220 aa		0.37	□□□□□ -2.35

Retrieved 100 of 5,963 RNA–protein pairs in 51 ms