RNA–Protein interactions for RNA: YOR054C

VHS3, Transcript of Negative regulatory subunit of protein phosphatase 1 Ppz1p, yeast

Gene VHS3, Length 2,025 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VHS3	YOR054C	UIP3	P39547	235 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	RSP5	P39940	809 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	YEL025C	P39991	1188 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	YEN1	P40028	759 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	ARF3	P40994	183 aa	RIP-Chip data	3.88	□□□□□ -1.79	not detected
VHS3	YOR054C	BAP3	P41815	604 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	TAX4	P47030	604 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	JHD2	P47156	728 aa	Predicted RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	YJR154W	P47181	346 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	ERV29	P53337	310 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	YMR265C	Q03508	461 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	OST6	Q03723	332 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	YHC1	Q05900	231 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	RIF2	Q06208	395 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	CUR1	Q06469	252 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	HBT1	Q07653	1046 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	RRT8	Q08219	342 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	RAD28	Q12021	506 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	WTM1	Q12363	437 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	YPR145C-A	Q2V2P0	78 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	HBN1	Q96VH4	193 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	HRP1	Q99383	534 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	KIN28	P06242	306 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	PEP4	P07267	405 aa	Known RBP	3.87	□□□□□ -1.79
VHS3	YOR054C	MTF1	P14908	341 aa	Known RBP	3.87	□□□□□ -1.79
VHS3	YOR054C	SNF6	P18888	332 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	IDP1	P21954	428 aa	Known RBP	3.87	□□□□□ -1.79
VHS3	YOR054C	RNA15	P25299	296 aa	Predicted RBP	3.87	□□□□□ -1.79
VHS3	YOR054C	YCL068C	P25593	260 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	ADE1	P27616	306 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	RIB1	P38066	345 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	ATG8	P38182	117 aa	RIP-Chip data	3.87	□□□□□ -1.79	not detected
VHS3	YOR054C	BIT2	P38346	545 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	MUP3	P38734	546 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	YHR054C	P38780	354 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	RAD55	P38953	406 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	SWM2	P40342	146 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	CHA4	P43634	648 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	TAD2	P47058	250 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	ROG1	P53118	685 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	PRM8	P53174	237 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	YNR014W	P53719	212 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	HPT1	Q04178	221 aa	Known RBP	3.87	□□□□□ -1.79
VHS3	YOR054C	YMR130W	Q04223	302 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	YDR124W	Q04608	324 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	GAD1	Q04792	585 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	DAL4	Q04895	635 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	DFG5	Q05031	458 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	SUE1	Q06524	206 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	YLR413W	Q06689	675 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	SSK1	Q07084	712 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	UAF30	Q08747	228 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	RGT2	Q12300	763 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	EAF3	Q12432	401 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	AHC1	Q12433	566 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	SRD1	P09007	221 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	NAM2	P11325	894 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	CDC34	P14682	295 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	RPB3	P16370	318 aa	Known RBP	3.87	□□□□□ -1.79
VHS3	YOR054C	CDC42	P19073	191 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	DEG1	P31115	442 aa	Known RBP	3.87	□□□□□ -1.79
VHS3	YOR054C	YSC83	P32792	385 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	EMP24	P32803	203 aa	Known RBP	3.87	□□□□□ -1.79
VHS3	YOR054C	TIM23	P32897	222 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	3.87	□□□□□ -1.79	not detected
VHS3	YOR054C	TMA19	P35691	167 aa	Known RBP	3.87	□□□□□ -1.79
VHS3	YOR054C	FRE2	P36033	711 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	AIM29	P36154	155 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	AIM3	P38266	947 aa	Known RBP	3.87	□□□□□ -1.79
VHS3	YOR054C	GDI1	P39958	451 aa	Known RBP	3.87	□□□□□ -1.79
VHS3	YOR054C	RPN3	P40016	523 aa	Known RBP	3.87	□□□□□ -1.79
VHS3	YOR054C	ATM1	P40416	690 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	SLS1	P42900	643 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	PRM10	P42946	383 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	YFL052W	P43551	465 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	YAE1	P47118	141 aa	Predicted RBP	3.87	□□□□□ -1.79
VHS3	YOR054C	ADO1	P47143	340 aa	Known RBP	3.87	□□□□□ -1.79
VHS3	YOR054C	GND2	P53319	492 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	YPR003C	P53394	754 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	YNR065C	P53751	1116 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	PRM1	P53835	661 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	NSG2	P53898	299 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	ARG5,6	Q01217	863 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	3.87	□□□□□ -1.79	not detected
VHS3	YOR054C	TPO3	Q06451	622 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	HDA2	Q06629	674 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	OPI10	Q08202	246 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	LPX1	Q12405	387 aa	Known RBP	3.87	□□□□□ -1.79
VHS3	YOR054C	YPL247C	Q12523	523 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	YKL018C-A	Q3E7A7	99 aa		3.87	□□□□□ -1.79
VHS3	YOR054C	HTB1	P02293	131 aa	Known RBP	3.86	□□□□□ -1.79
VHS3	YOR054C	HTB2	P02294	131 aa		3.86	□□□□□ -1.79
VHS3	YOR054C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	3.86	□□□□□ -1.79	not detected
VHS3	YOR054C	SAM35	P14693	329 aa		3.86	□□□□□ -1.79
VHS3	YOR054C	URA6	P15700	204 aa		3.86	□□□□□ -1.79
VHS3	YOR054C	HSP26	P15992	214 aa	Known RBP RIP-Chip data	3.86	□□□□□ -1.79	not detected
VHS3	YOR054C	FUN14	P18411	198 aa		3.86	□□□□□ -1.79
VHS3	YOR054C	PRE9	P23638	258 aa	Known RBP	3.86	□□□□□ -1.79
VHS3	YOR054C	RNA14	P25298	677 aa	Known RBP	3.86	□□□□□ -1.79
VHS3	YOR054C	SGF29	P25554	259 aa		3.86	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 21.5 ms