RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeast

Gene VPS29, Length 849 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS29	YHR012W	MSY1	P48527	492 aa		4.38	□□□□□ -1.71
VPS29	YHR012W	SOK2	P53438	785 aa	Predicted RBP	4.38	□□□□□ -1.71
VPS29	YHR012W	DCP2	P53550	970 aa	Known RBP	4.38	□□□□□ -1.71
VPS29	YHR012W	TIM10	P87108	93 aa		4.38	□□□□□ -1.71
VPS29	YHR012W	PLB2	Q03674	706 aa		4.38	□□□□□ -1.71
VPS29	YHR012W	RAD30	Q04049	632 aa		4.38	□□□□□ -1.71
VPS29	YHR012W	SHE9	Q04172	456 aa		4.38	□□□□□ -1.71
VPS29	YHR012W	RAF1	Q06891	181 aa		4.38	□□□□□ -1.71
VPS29	YHR012W	NSL1	Q12143	216 aa		4.38	□□□□□ -1.71
VPS29	YHR012W	HAP4	P14064	554 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	PHO81	P17442	1178 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	EXO70	P19658	623 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	RPS1B	P23248	255 aa	Known RBP	4.37	□□□□□ -1.71
VPS29	YHR012W	DBP2	P24783	546 aa	Known RBP	4.37	□□□□□ -1.71
VPS29	YHR012W	CDC10	P25342	322 aa	Known RBP	4.37	□□□□□ -1.71
VPS29	YHR012W	ZTA1	P38230	334 aa	Known RBP	4.37	□□□□□ -1.71
VPS29	YHR012W	YGP1	P38616	354 aa	Known RBP	4.37	□□□□□ -1.71
VPS29	YHR012W	RCK1	P38622	512 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	BIG1	P38813	335 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	COG3	P40094	801 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	IMA5	P40884	581 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	IAH1	P41734	238 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	TOM22	P49334	152 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	RNR4	P49723	345 aa	Known RBP	4.37	□□□□□ -1.71
VPS29	YHR012W	TWF1	P53250	332 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	OGG1	P53397	376 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS29	YHR012W	ARC35	P53731	342 aa	Known RBP	4.37	□□□□□ -1.71
VPS29	YHR012W	INP1	Q03694	420 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	SNX41	Q04053	625 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	KRE28	Q04431	385 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	UTP21	Q06078	939 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS29	YHR012W	HDA2	Q06629	674 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	PML1	Q07930	204 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS29	YHR012W	MCP1	Q12106	302 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	YRA1	Q12159	226 aa	Known RBP	4.37	□□□□□ -1.71
VPS29	YHR012W	SWM1	Q12379	170 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	RPS21B	Q3E754	87 aa	Known RBP	4.37	□□□□□ -1.71
VPS29	YHR012W	YOL087C	Q99247	1116 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	YPT6	Q99260	215 aa		4.37	□□□□□ -1.71
VPS29	YHR012W	HEM4	P06174	275 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	TPK2	P06245	380 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	ADE5,7	P07244	802 aa	Known RBP	4.36	□□□□□ -1.71
VPS29	YHR012W	YMR085W	P0CF18	432 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	SPS100	P13130	326 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	MER1	P16523	270 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	CCA1	P21269	546 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	CSM1	P25651	190 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	RPT5	P33297	434 aa	Known RBP	4.36	□□□□□ -1.71
VPS29	YHR012W	MTR2	P34232	184 aa	Known RBP	4.36	□□□□□ -1.71
VPS29	YHR012W	MRPL39	P36533	70 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	TSC10	P38342	320 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	FAA2	P39518	744 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	GPP1	P41277	250 aa	Known RBP	4.36	□□□□□ -1.71
VPS29	YHR012W	YGR201C	P42936	225 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	MRK1	P50873	501 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	DIA3	P52290	468 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	YNR040W	P53736	256 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	MRPL19	P53875	158 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	EKI1	Q03764	534 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	MRPL1	Q04599	285 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	MFG1	Q07684	458 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	NOP12	Q08208	459 aa	Known RBP	4.36	□□□□□ -1.71
VPS29	YHR012W	ENB1	Q08299	606 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	RDL2	Q08742	149 aa	Known RBP	4.36	□□□□□ -1.71
VPS29	YHR012W	GRE1	Q08969	168 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	SFM1	Q12314	213 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	DBP10	Q12389	995 aa	Known RBP	4.36	□□□□□ -1.71
VPS29	YHR012W	YKL018C-A	Q3E7A7	99 aa		4.36	□□□□□ -1.71
VPS29	YHR012W	THP2	O13539	261 aa	Known RBP	4.35	□□□□□ -1.71
VPS29	YHR012W	ATP2	P00830	511 aa	Known RBP	4.35	□□□□□ -1.71
VPS29	YHR012W	ARG81	P05085	880 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	PRB1	P09232	635 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	SAN1	P22470	610 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	RPI1	P23250	407 aa	Known RBP	4.35	□□□□□ -1.71
VPS29	YHR012W	SLC1	P33333	303 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	DTR1	P38125	572 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	YHL012W	P38709	493 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	YHL037C	P38733	133 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	PTH1	P38876	190 aa	Known RBP	4.35	□□□□□ -1.71
VPS29	YHR012W	MRX1	P40050	688 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	LSM4	P40070	187 aa	Known RBP	4.35	□□□□□ -1.71
VPS29	YHR012W	AVT7	P40501	490 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	RLP7	P40693	322 aa	Known RBP	4.35	□□□□□ -1.71
VPS29	YHR012W	GDS1	P41913	522 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	NIT2	P47016	307 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	COS6	P53344	381 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	ACS1	Q01574	713 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	RSC9	Q03124	581 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	YML119W	Q03208	357 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	COX20	Q04935	205 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	RRT8	Q08219	342 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	YDL109C	Q12103	647 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	NCE102	Q12207	173 aa	RIP-Chip data	4.35	□□□□□ -1.71	not detected
VPS29	YHR012W	FOL3	Q12676	427 aa	Predicted RBP	4.35	□□□□□ -1.71
VPS29	YHR012W	MHF1	Q3E835	90 aa		4.35	□□□□□ -1.71
VPS29	YHR012W	BPH1	P25356	2167 aa		4.34	□□□□□ -1.71
VPS29	YHR012W	ARG3	P05150	338 aa		4.34	□□□□□ -1.71
VPS29	YHR012W	RHO1	P06780	209 aa	Known RBP	4.34	□□□□□ -1.71
VPS29	YHR012W	MDH2	P22133	377 aa		4.34	□□□□□ -1.71
VPS29	YHR012W	YCK1	P23291	538 aa		4.34	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms