RNA–Protein interactions for RNA: YNL222W

SSU72, Transcript of Phosphatase and transcription/RNA-processing factor, yeast

Gene SSU72, Length 621 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSU72	YNL222W	RUP1	Q12242	671 aa		3.23	□□□□□ -1.89
SSU72	YNL222W	SKI3	P17883	1432 aa	Known RBP	3.22	□□□□□ -1.89
SSU72	YNL222W	THR4	P16120	514 aa	Known RBP	3.22	□□□□□ -1.89
SSU72	YNL222W	CPR2	P23285	205 aa		3.22	□□□□□ -1.89
SSU72	YNL222W	RIM1	P32445	135 aa	Known RBP	3.22	□□□□□ -1.89
SSU72	YNL222W	COX13	P32799	129 aa		3.22	□□□□□ -1.89
SSU72	YNL222W	PFS1	P38872	237 aa		3.22	□□□□□ -1.89
SSU72	YNL222W	FAD1	P38913	306 aa		3.22	□□□□□ -1.89
SSU72	YNL222W	ALD5	P40047	520 aa	Known RBP	3.22	□□□□□ -1.89
SSU72	YNL222W	YGR117C	P53270	476 aa		3.22	□□□□□ -1.89
SSU72	YNL222W	SPR6	Q01684	191 aa		3.22	□□□□□ -1.89
SSU72	YNL222W	SPC19	Q03954	165 aa		3.22	□□□□□ -1.89
SSU72	YNL222W	ECM11	Q04110	302 aa		3.22	□□□□□ -1.89
SSU72	YNL222W	ARR2	Q06597	130 aa		3.22	□□□□□ -1.89
SSU72	YNL222W	YPR091C	Q06833	770 aa		3.22	□□□□□ -1.89
SSU72	YNL222W	ADH1	P00330	348 aa	Known RBP	3.21	□□□□□ -1.9
SSU72	YNL222W	PRB1	P09232	635 aa		3.21	□□□□□ -1.9
SSU72	YNL222W	ALG1	P16661	449 aa		3.21	□□□□□ -1.9
SSU72	YNL222W	RPB4	P20433	221 aa	Predicted RBP	3.21	□□□□□ -1.9
SSU72	YNL222W	GPI18	P38211	433 aa		3.21	□□□□□ -1.9
SSU72	YNL222W	PEX18	P38855	283 aa		3.21	□□□□□ -1.9
SSU72	YNL222W	GPI16	P38875	610 aa		3.21	□□□□□ -1.9
SSU72	YNL222W	TOS2	P50078	622 aa		3.21	□□□□□ -1.9
SSU72	YNL222W	YGL262W	P53054	175 aa		3.21	□□□□□ -1.9
SSU72	YNL222W	PIB2	P53191	635 aa		3.21	□□□□□ -1.9
SSU72	YNL222W	ATG38	Q05789	226 aa	Known RBP	3.21	□□□□□ -1.9
SSU72	YNL222W	SSQ1	Q05931	657 aa	Predicted RBP	3.21	□□□□□ -1.9
SSU72	YNL222W	YLR456W	Q06199	204 aa		3.21	□□□□□ -1.9
SSU72	YNL222W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	3.2	□□□□□ -1.9	not detected
SSU72	YNL222W	CBP6	P07253	162 aa	Predicted RBP	3.2	□□□□□ -1.9
SSU72	YNL222W	ZRC1	P20107	442 aa		3.2	□□□□□ -1.9
SSU72	YNL222W	PHO84	P25297	587 aa	Known RBP	3.2	□□□□□ -1.9
SSU72	YNL222W	DAL80	P26343	269 aa		3.2	□□□□□ -1.9
SSU72	YNL222W	HSP104	P31539	908 aa	Known RBP	3.2	□□□□□ -1.9
SSU72	YNL222W	VPH1	P32563	840 aa	Known RBP	3.2	□□□□□ -1.9
SSU72	YNL222W	BUD2	P33314	1104 aa		3.2	□□□□□ -1.9
SSU72	YNL222W	NUF2	P33895	451 aa		3.2	□□□□□ -1.9
SSU72	YNL222W	YBL028C	P38202	106 aa		3.2	□□□□□ -1.9
SSU72	YNL222W	MED8	P38304	223 aa		3.2	□□□□□ -1.9
SSU72	YNL222W	HSM3	P38348	480 aa		3.2	□□□□□ -1.9
SSU72	YNL222W	CWC21	Q03375	135 aa	Known RBP	3.2	□□□□□ -1.9
SSU72	YNL222W	FCY22	Q12119	530 aa		3.2	□□□□□ -1.9
SSU72	YNL222W	HTZ1	Q12692	134 aa	Known RBP	3.2	□□□□□ -1.9
SSU72	YNL222W	CFT1	Q06632	1357 aa	Known RBP	3.2	□□□□□ -1.9
SSU72	YNL222W	PET494	P07390	489 aa	Predicted RBP	3.19	□□□□□ -1.9
SSU72	YNL222W	IGD1	P43598	195 aa		3.19	□□□□□ -1.9
SSU72	YNL222W	PXR1	P53335	271 aa	Predicted RBP	3.19	□□□□□ -1.9
SSU72	YNL222W	SPO19	Q03029	223 aa		3.19	□□□□□ -1.9
SSU72	YNL222W	YDR286C	Q05530	114 aa		3.19	□□□□□ -1.9
SSU72	YNL222W	NNT1	Q05874	261 aa		3.19	□□□□□ -1.9
SSU72	YNL222W	IES4	Q08561	116 aa		3.19	□□□□□ -1.9
SSU72	YNL222W	ISA2	Q12425	185 aa		3.19	□□□□□ -1.9
SSU72	YNL222W	SSK22	P25390	1331 aa	Predicted RBP	3.19	□□□□□ -1.9
SSU72	YNL222W	OPI3	P05375	206 aa		3.18	□□□□□ -1.9
SSU72	YNL222W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	3.18	□□□□□ -1.9	not detected
SSU72	YNL222W	DBF4	P32325	704 aa		3.18	□□□□□ -1.9
SSU72	YNL222W	RAD5	P32849	1169 aa	Predicted RBP	3.18	□□□□□ -1.9
SSU72	YNL222W	SKT5	P34226	696 aa		3.18	□□□□□ -1.9
SSU72	YNL222W	MRPL27	P36526	146 aa	Predicted RBP	3.18	□□□□□ -1.9
SSU72	YNL222W	GPX2	P38143	162 aa		3.18	□□□□□ -1.9
SSU72	YNL222W	STE24	P47154	453 aa		3.18	□□□□□ -1.9
SSU72	YNL222W	SHE4	P51534	789 aa		3.18	□□□□□ -1.9
SSU72	YNL222W	EFM5	P53200	248 aa	Known RBP	3.18	□□□□□ -1.9
SSU72	YNL222W	YGR111W	P53265	400 aa		3.18	□□□□□ -1.9
SSU72	YNL222W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	3.18	□□□□□ -1.9	not detected
SSU72	YNL222W	YMR111C	Q04461	462 aa	Predicted RBP	3.18	□□□□□ -1.9
SSU72	YNL222W	PGC1	Q08959	321 aa		3.18	□□□□□ -1.9
SSU72	YNL222W	RNH203	Q12338	110 aa		3.18	□□□□□ -1.9
SSU72	YNL222W	FOL3	Q12676	427 aa	Predicted RBP	3.18	□□□□□ -1.9
SSU72	YNL222W	FUN26	P31381	517 aa		3.17	□□□□□ -1.9
SSU72	YNL222W	RME1	P32338	300 aa	Known RBP	3.17	□□□□□ -1.9
SSU72	YNL222W	ECM8	P38246	354 aa		3.17	□□□□□ -1.9
SSU72	YNL222W	ROG1	P53118	685 aa		3.17	□□□□□ -1.9
SSU72	YNL222W	TRM112	P53738	135 aa	Predicted RBP	3.17	□□□□□ -1.9
SSU72	YNL222W	KTR6	P54070	446 aa		3.17	□□□□□ -1.9
SSU72	YNL222W	TPS1	Q00764	495 aa	Known RBP	3.17	□□□□□ -1.9
SSU72	YNL222W	YDL114W	Q07530	308 aa		3.17	□□□□□ -1.9
SSU72	YNL222W	UAF30	Q08747	228 aa		3.17	□□□□□ -1.9
SSU72	YNL222W	YDL199C	Q12407	687 aa		3.17	□□□□□ -1.9
SSU72	YNL222W	TPK3	P05986	398 aa		3.16	□□□□□ -1.9
SSU72	YNL222W	SEN2	P16658	377 aa		3.16	□□□□□ -1.9
SSU72	YNL222W	SLM5	P25345	492 aa	Known RBP	3.16	□□□□□ -1.9
SSU72	YNL222W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	3.16	□□□□□ -1.9	not detected
SSU72	YNL222W	PXA2	P34230	853 aa		3.16	□□□□□ -1.9
SSU72	YNL222W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	3.16	□□□□□ -1.9	not detected
SSU72	YNL222W	MCR1	P36060	302 aa	Known RBP	3.16	□□□□□ -1.9
SSU72	YNL222W	QDR3	P38227	689 aa		3.16	□□□□□ -1.9
SSU72	YNL222W	SHC1	P39000	512 aa		3.16	□□□□□ -1.9
SSU72	YNL222W	ATM1	P40416	690 aa		3.16	□□□□□ -1.9
SSU72	YNL222W	PMT5	P52867	743 aa		3.16	□□□□□ -1.9
SSU72	YNL222W	FLC3	P53121	802 aa		3.16	□□□□□ -1.9
SSU72	YNL222W	RRN9	P53437	365 aa		3.16	□□□□□ -1.9
SSU72	YNL222W	ECM7	Q06200	448 aa		3.16	□□□□□ -1.9
SSU72	YNL222W	MCH1	Q07376	486 aa		3.16	□□□□□ -1.9
SSU72	YNL222W	RIO1	Q12196	484 aa	Known RBP	3.16	□□□□□ -1.9
SSU72	YNL222W	YOP1	Q12402	180 aa		3.16	□□□□□ -1.9
SSU72	YNL222W	TCB3	Q03640	1545 aa	Known RBP	3.15	□□□□□ -1.9
SSU72	YNL222W	PHO91	P27514	894 aa		3.15	□□□□□ -1.91
SSU72	YNL222W	ASF2	P32448	525 aa	Predicted RBP	3.15	□□□□□ -1.91
SSU72	YNL222W	DPH2	P32461	534 aa		3.15	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 37.3 ms