RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 XKR3Q5GH77 459 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 OTOP2Q7RTS6 562 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 TRMT1LQ7Z2T5 733 aaKnown RBP10.51□□□□□ -0.73
LDLR-211ENST00000560173 RSPH3Q86UC2 560 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 C4orf32Q8N8J7 132 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 DNAJB3Q8WWF6 145 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 FAM161BQ96MY7 647 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 LXNQ9BS40 222 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 FAM49AQ9H0Q0 323 aaPredicted RBP10.51□□□□□ -0.73
LDLR-211ENST00000560173 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.51□□□□□ -0.73
LDLR-211ENST00000560173 NRBP2Q9NSY0 501 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 FOXD4L1Q9NU39 408 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 CXXC1Q9P0U4 656 aaPredicted RBP10.51□□□□□ -0.73
LDLR-211ENST00000560173 WRAP73Q9P2S5 460 aaPredicted RBP10.51□□□□□ -0.73
LDLR-211ENST00000560173 PCDHA12Q9UN75 941 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 CEP131Q9UPN4 1083 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 PCDHB6Q9Y5E3 794 aa10.51□□□□□ -0.73
LDLR-211ENST00000560173 SMIM35A0A1B0GVV1 85 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 VPS37CA5D8V6 355 aaPredicted RBP10.5□□□□□ -0.73
LDLR-211ENST00000560173 TMEM150BA6NC51 233 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 POTEMA6NI47 508 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 RBAK-RBAKDNI3L0D1 243 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 CHRNA1P02708 482 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 COL9A1P20849 921 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 SYT1P21579 422 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 MRPS6P82932 125 aaKnown RBP10.5□□□□□ -0.73
LDLR-211ENST00000560173 CYP4A11Q02928 519 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 TCTN1Q2MV58 587 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 ANO5Q75V66 913 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 BRAPQ7Z569 592 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 LINC01465Q8N7H1 131 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 NEK9Q8TD19 979 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 DYDC2Q96IM9 177 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 CEP89Q96ST8 783 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 HSD17B14Q9BPX1 270 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 EIF2AK1Q9BQI3 630 aaKnown RBP10.5□□□□□ -0.73
LDLR-211ENST00000560173 NIFKQ9BYG3 293 aaKnown RBP10.5□□□□□ -0.73
LDLR-211ENST00000560173 OSBPL7Q9BZF2 842 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 FTOQ9C0B1 505 aaKnown RBP eCLIP10.5□□□□□ -0.73
LDLR-211ENST00000560173 MTIF3Q9H2K0 278 aaKnown RBP10.5□□□□□ -0.73
LDLR-211ENST00000560173 RGL1Q9NZL6 768 aa10.5□□□□□ -0.73
LDLR-211ENST00000560173 SEPT9Q9UHD8 586 aaPredicted RBP10.5□□□□□ -0.73
LDLR-211ENST00000560173 DDX11L8A8MPP1 907 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 MAGEB2O15479 319 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 DKC1O60832 514 aaKnown RBP eCLIP10.49□□□□□ -0.73
LDLR-211ENST00000560173 SLITRK3O94933 977 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 LYPLA2O95372 231 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 ACTN1P12814 892 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 FXR2P51116 673 aaKnown RBP eCLIP10.49□□□□□ -0.73
LDLR-211ENST00000560173 PTGDRQ13258 359 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 CTTNQ14247 550 aaKnown RBP10.49□□□□□ -0.73
LDLR-211ENST00000560173 MTERF2Q49AM1 385 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 PLA2G4FQ68DD2 849 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 CNKSR3Q6P9H4 555 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 FERMT3Q86UX7 667 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 C4orf19Q8IY42 314 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 KIAA0319LQ8IZA0 1049 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 NME8Q8N427 588 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 ZSWIM4Q9H7M6 989 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 MTMR6Q9Y217 621 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 CDY2AQ9Y6F7 541 aa10.49□□□□□ -0.73
LDLR-211ENST00000560173 ZBBXA8MT70 800 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 LAD1O00515 517 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 BAIAP3O94812 1187 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 SPATA31C1P0DKV0 1188 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 GHRP10912 638 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 YWHABP31946 246 aaKnown RBP10.48□□□□□ -0.73
LDLR-211ENST00000560173 PRPHP41219 470 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 TECP42680 631 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 CLCN3P51790 818 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 SMAD3P84022 425 aaKnown RBP10.48□□□□□ -0.73
LDLR-211ENST00000560173 ATP2C1P98194 919 aaPredicted RBP10.48□□□□□ -0.73
LDLR-211ENST00000560173 TBC1D8BQ0IIM8 1120 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 TMEM62Q0P6H9 643 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 RESTQ13127 1097 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 MKRN4PQ13434 485 aaPredicted RBP10.48□□□□□ -0.73
LDLR-211ENST00000560173 LPIN1Q14693 890 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 TMEM266Q2M3C6 531 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 PLEKHG4Q58EX7 1191 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 FBXO47Q5MNV8 452 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 IER5Q5VY09 327 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 TPH2Q8IWU9 490 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 LRRC71Q8N4P6 559 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 METTL13Q8N6R0 699 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 SH2D3AQ9BRG2 576 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 CYP26B1Q9NR63 512 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 TRPV2Q9Y5S1 764 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 SLC4A7Q9Y6M7 1214 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 SIP14410 1827 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 CHD9Q3L8U1 2897 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 KDM3AQ9Y4C1 1321 aa10.48□□□□□ -0.73
LDLR-211ENST00000560173 IGKV6-21A0A0C4DH24 114 aa10.47□□□□□ -0.73
LDLR-211ENST00000560173 ABHD14A-ACY1A0A1B0GW23 586 aa10.47□□□□□ -0.73
LDLR-211ENST00000560173 M0QZ92 97 aa10.47□□□□□ -0.73
LDLR-211ENST00000560173 STX6O43752 255 aa10.47□□□□□ -0.73
LDLR-211ENST00000560173 NPEPPSP55786 919 aa10.47□□□□□ -0.73
LDLR-211ENST00000560173 WDR5P61964 334 aaKnown RBP10.47□□□□□ -0.73
LDLR-211ENST00000560173 IL17AQ16552 155 aa10.47□□□□□ -0.73
LDLR-211ENST00000560173 EFCAB12Q6NXP0 572 aa10.47□□□□□ -0.73
LDLR-211ENST00000560173 TSHZ1Q6ZSZ6 1077 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms