RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	SYP1	P25623	870 aa	Known RBP	3.37	□□□□□ -1.87
SSM4	YIL030C	STE5	P32917	917 aa		3.37	□□□□□ -1.87
SSM4	YIL030C	MRPL27	P36526	146 aa	Predicted RBP	3.37	□□□□□ -1.87
SSM4	YIL030C	THI2	P38141	450 aa		3.37	□□□□□ -1.87
SSM4	YIL030C	FAT1	P38225	669 aa		3.37	□□□□□ -1.87
SSM4	YIL030C	SRP68	P38687	599 aa	Known RBP	3.37	□□□□□ -1.87
SSM4	YIL030C	DHH1	P39517	506 aa	Known RBP	3.37	□□□□□ -1.87
SSM4	YIL030C	SEN34	P39707	275 aa		3.37	□□□□□ -1.87
SSM4	YIL030C	HIS6	P40545	261 aa		3.37	□□□□□ -1.87
SSM4	YIL030C	MRX5	P47007	382 aa		3.37	□□□□□ -1.87
SSM4	YIL030C	BIO3	P50277	480 aa		3.37	□□□□□ -1.87
SSM4	YIL030C	ROG1	P53118	685 aa		3.37	□□□□□ -1.87
SSM4	YIL030C	YGR015C	P53208	328 aa		3.37	□□□□□ -1.87
SSM4	YIL030C	YMD8	Q03697	442 aa		3.37	□□□□□ -1.87
SSM4	YIL030C	YOR059C	Q08448	450 aa	Known RBP	3.37	□□□□□ -1.87
SSM4	YIL030C	RGT2	Q12300	763 aa		3.37	□□□□□ -1.87
SSM4	YIL030C	PST1	Q12355	444 aa		3.37	□□□□□ -1.87
SSM4	YIL030C	REP2	P03872	296 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	RPP1B	P10622	106 aa	Known RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	VMA2	P16140	517 aa	Known RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	RAD27	P26793	382 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	YRO2	P38079	344 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	SEA4	P38164	1038 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	BNA4	P38169	460 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	LSM12	P38828	187 aa	Known RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	YJL181W	P46987	611 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	PFD1	P46988	109 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	MUP1	P50276	574 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	ASI3	P53983	676 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	YAT1	P80235	687 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	TIM11	P81449	96 aa	Predicted RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	INA17	Q02888	182 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	YMR034C	Q05131	434 aa	Predicted RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	BSC2	Q05611	235 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	YLR224W	Q05947	369 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	GLO4	Q12320	285 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	ATP4	P05626	244 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	CDC23	P16522	626 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	YIH1	P25637	258 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	UBC8	P28263	218 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	MRS6	P32864	603 aa	Known RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	KKQ8	P36004	724 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	APD1	P38281	316 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	RGI1	P40043	161 aa	Predicted RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	FET4	P40988	552 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	OAZ1	Q02803	292 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	VTA1	Q06263	330 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	YLR108C	Q12259	485 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	YOR131C	Q12486	218 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	TRP3	P00937	484 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	SCL1	P21243	252 aa	Known RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	RSA4	P25382	515 aa	Known RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	MRPL9	P31334	269 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	SYN8	P31377	255 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	ATS1	P31386	333 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	YKL102C	P34249	101 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	SFK1	P35735	353 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	TCD2	P36101	447 aa	Known RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	BET3	P36149	193 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	TPO2	P53283	614 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	MNT4	P53745	580 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	PRM15	Q03262	622 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	SCS7	Q03529	384 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	OST6	Q03723	332 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	DXO1	Q06349	442 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	ARV1	Q06541	321 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	SHS1	Q07657	551 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	PDH1	Q12428	516 aa	Known RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	HBN1	Q96VH4	193 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	CBP1	P07252	654 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	MRP1	P10662	321 aa	Known RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	GUK1	P15454	187 aa	Known RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	YCR099C	P25657	155 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	AAR2	P32357	355 aa	Predicted RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	VMA8	P32610	256 aa	Known RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	COX13	P32799	129 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	AIM10	P39965	576 aa	Known RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	POG1	P40473	351 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	ICE2	P40499	491 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	CIN1	P40987	1014 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	YJR141W	P47172	347 aa	Predicted RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	NHP10	Q03435	203 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	ATG38	Q05789	226 aa	Known RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	BOP2	Q06150	570 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	MRI1	Q06489	411 aa	Known RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	PMT7	Q06644	662 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	DTD1	Q07648	150 aa	Known RBP	3.36	□□□□□ -1.87
SSM4	YIL030C	TGS1	Q12052	315 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	ISN1	Q99312	450 aa		3.36	□□□□□ -1.87
SSM4	YIL030C	RPS17A	P02407	136 aa	Known RBP	3.35	□□□□□ -1.87
SSM4	YIL030C	RPS17B	P14127	136 aa	Known RBP	3.35	□□□□□ -1.87
SSM4	YIL030C	YCR061W	P25639	631 aa		3.35	□□□□□ -1.87
SSM4	YIL030C	YJU2	P28320	278 aa	Predicted RBP	3.35	□□□□□ -1.87
SSM4	YIL030C	VPH1	P32563	840 aa	Known RBP	3.35	□□□□□ -1.87
SSM4	YIL030C	ARP1	P38696	384 aa		3.35	□□□□□ -1.87
SSM4	YIL030C	JHD1	P40034	492 aa		3.35	□□□□□ -1.87
SSM4	YIL030C	NUP49	Q02199	472 aa		3.35	□□□□□ -1.87
SSM4	YIL030C	HEH2	Q03281	663 aa		3.35	□□□□□ -1.87
SSM4	YIL030C	SKY1	Q03656	742 aa		3.35	□□□□□ -1.87
SSM4	YIL030C	YDL211C	Q12121	372 aa		3.35	□□□□□ -1.87

Retrieved 100 of 5,963 RNA–protein pairs in 159.4 ms