RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeastyeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHR3YDL212W YGR117CP53270 476 aa3.3□□□□□ -1.88
SHR3YDL212W ISA2Q12425 185 aa3.3□□□□□ -1.88
SHR3YDL212W YBL111CQ3E7Y5 667 aa3.3□□□□□ -1.88
SHR3YDL212W NAG1Q8TGN9 163 aa3.3□□□□□ -1.88
SHR3YDL212W PAB1P04147 577 aaKnown RBP RIP-Chip data3.29□□□□□ -1.88 RIP-Chip
SHR3YDL212W OPI3P05375 206 aa3.29□□□□□ -1.88
SHR3YDL212W TIM17P39515 158 aa3.29□□□□□ -1.88
SHR3YDL212W STE24P47154 453 aa3.29□□□□□ -1.88
SHR3YDL212W RRN9P53437 365 aa3.29□□□□□ -1.88
SHR3YDL212W SKI8Q02793 397 aaPredicted RBP3.29□□□□□ -1.88
SHR3YDL212W LOT6Q07923 191 aa3.29□□□□□ -1.88
SHR3YDL212W HSP104P31539 908 aaKnown RBP3.28□□□□□ -1.88
SHR3YDL212W DBF4P32325 704 aa3.28□□□□□ -1.88
SHR3YDL212W GPX2P38143 162 aa3.28□□□□□ -1.88
SHR3YDL212W PIB2P53191 635 aa3.28□□□□□ -1.88
SHR3YDL212W CLD1P53264 445 aa3.28□□□□□ -1.88
SHR3YDL212W SPR6Q01684 191 aa3.28□□□□□ -1.88
SHR3YDL212W YPR091CQ06833 770 aa3.28□□□□□ -1.88
SHR3YDL212W PSK1P31374 1356 aa3.27□□□□□ -1.89
SHR3YDL212W ADH1P00330 348 aaKnown RBP3.27□□□□□ -1.89
SHR3YDL212W PRB1P09232 635 aa3.27□□□□□ -1.89
SHR3YDL212W QDR3P38227 689 aa3.27□□□□□ -1.89
SHR3YDL212W ROG1P53118 685 aa3.27□□□□□ -1.89
SHR3YDL212W RNY1Q02933 434 aaKnown RBP3.27□□□□□ -1.89
SHR3YDL212W PRM6Q04705 352 aa3.27□□□□□ -1.89
SHR3YDL212W ECM7Q06200 448 aa3.27□□□□□ -1.89
SHR3YDL212W GPM3Q12326 303 aa3.27□□□□□ -1.89
SHR3YDL212W FUN26P31381 517 aa3.26□□□□□ -1.89
SHR3YDL212W NRP1P32770 719 aaKnown RBP RIP-Chip data3.26□□□□□ -1.89not detected
SHR3YDL212W TOA2P32774 122 aa3.26□□□□□ -1.89
SHR3YDL212W PFS1P38872 237 aa3.26□□□□□ -1.89
SHR3YDL212W YNL208WP40159 199 aaKnown RBP3.26□□□□□ -1.89
SHR3YDL212W ABM1P47146 123 aa3.26□□□□□ -1.89
SHR3YDL212W YPS5P53057 165 aa3.26□□□□□ -1.89
SHR3YDL212W VHS1Q03785 461 aa3.26□□□□□ -1.89
SHR3YDL212W RPL12AP0CX53 165 aaKnown RBP3.25□□□□□ -1.89
SHR3YDL212W RPL12BP0CX54 165 aa3.25□□□□□ -1.89
SHR3YDL212W COX13P32799 129 aa3.25□□□□□ -1.89
SHR3YDL212W YHC1Q05900 231 aaKnown RBP3.25□□□□□ -1.89
SHR3YDL212W YDL114WQ07530 308 aa3.25□□□□□ -1.89
SHR3YDL212W NSE1Q07913 336 aa3.25□□□□□ -1.89
SHR3YDL212W DCI1Q08558 271 aa3.25□□□□□ -1.89
SHR3YDL212W FCY22Q12119 530 aa3.25□□□□□ -1.89
SHR3YDL212W ZRC1P20107 442 aa3.24□□□□□ -1.89
SHR3YDL212W YSC83P32792 385 aa3.24□□□□□ -1.89
SHR3YDL212W LTV1P34078 463 aa3.24□□□□□ -1.89
SHR3YDL212W SKT5P34226 696 aa3.24□□□□□ -1.89
SHR3YDL212W MRPL27P36526 146 aaPredicted RBP3.24□□□□□ -1.89
SHR3YDL212W URC2Q04411 772 aa3.24□□□□□ -1.89
SHR3YDL212W ASA1Q06822 443 aa3.24□□□□□ -1.89
SHR3YDL212W YOP1Q12402 180 aa3.24□□□□□ -1.89
SHR3YDL212W YDL199CQ12407 687 aa3.24□□□□□ -1.89
SHR3YDL212W CBP6P07253 162 aaPredicted RBP3.23□□□□□ -1.89
SHR3YDL212W PHO91P27514 894 aa3.23□□□□□ -1.89
SHR3YDL212W MCR1P36060 302 aaKnown RBP3.23□□□□□ -1.89
SHR3YDL212W MRPS9P38120 278 aa3.23□□□□□ -1.89
SHR3YDL212W HEM14P40012 539 aa3.23□□□□□ -1.89
SHR3YDL212W ATM1P40416 690 aa3.23□□□□□ -1.89
SHR3YDL212W KEG1P43614 200 aa3.23□□□□□ -1.89
SHR3YDL212W CCH1P50077 2039 aa3.23□□□□□ -1.89
SHR3YDL212W MKC7P53379 596 aa3.23□□□□□ -1.89
SHR3YDL212W MEH1Q02205 184 aa3.23□□□□□ -1.89
SHR3YDL212W PRP3Q03338 469 aaPredicted RBP3.23□□□□□ -1.89
SHR3YDL212W YPQ1Q12010 308 aa3.23□□□□□ -1.89
SHR3YDL212W MCT1Q12283 360 aa3.23□□□□□ -1.89
SHR3YDL212W TPK3P05986 398 aa3.22□□□□□ -1.89
SHR3YDL212W SLM5P25345 492 aaKnown RBP3.22□□□□□ -1.89
SHR3YDL212W RAD5P32849 1169 aaPredicted RBP3.22□□□□□ -1.89
SHR3YDL212W GPI18P38211 433 aa3.22□□□□□ -1.89
SHR3YDL212W IGD1P43598 195 aa3.22□□□□□ -1.89
SHR3YDL212W YGL262WP53054 175 aa3.22□□□□□ -1.89
SHR3YDL212W ALF1P53904 254 aa3.22□□□□□ -1.89
SHR3YDL212W CHA1P25379 360 aaKnown RBP3.21□□□□□ -1.9
SHR3YDL212W SPO23P33757 523 aa3.21□□□□□ -1.9
SHR3YDL212W TIR2P33890 251 aa3.21□□□□□ -1.9
SHR3YDL212W ECM8P38246 354 aa3.21□□□□□ -1.9
SHR3YDL212W GEP4P38812 185 aa3.21□□□□□ -1.9
SHR3YDL212W NDL1Q06568 189 aa3.21□□□□□ -1.9
SHR3YDL212W NOP6Q07623 225 aaKnown RBP3.21□□□□□ -1.9
SHR3YDL212W VMA8P32610 256 aaKnown RBP3.2□□□□□ -1.9
SHR3YDL212W SRP72P38688 640 aaKnown RBP3.2□□□□□ -1.9
SHR3YDL212W PAC11P40960 533 aa3.2□□□□□ -1.9
SHR3YDL212W TPS1Q00764 495 aaKnown RBP3.2□□□□□ -1.9
SHR3YDL212W IES4Q08561 116 aa3.2□□□□□ -1.9
SHR3YDL212W ERP4Q12450 207 aa3.2□□□□□ -1.9
SHR3YDL212W SMC6Q12749 1114 aa3.2□□□□□ -1.9
SHR3YDL212W PDE2P06776 526 aa3.19□□□□□ -1.9
SHR3YDL212W ARF1P11076 181 aaKnown RBP3.19□□□□□ -1.9
SHR3YDL212W CMK2P22517 447 aa3.19□□□□□ -1.9
SHR3YDL212W TRM112P53738 135 aaPredicted RBP3.19□□□□□ -1.9
SHR3YDL212W ENT5Q03769 411 aaKnown RBP3.19□□□□□ -1.9
SHR3YDL212W ECM11Q04110 302 aa3.19□□□□□ -1.9
SHR3YDL212W GYL1Q04322 720 aa3.19□□□□□ -1.9
SHR3YDL212W PIN3Q06449 215 aa3.19□□□□□ -1.9
SHR3YDL212W SPE3Q12074 293 aaKnown RBP3.19□□□□□ -1.9
SHR3YDL212W HTZ1Q12692 134 aaKnown RBP3.19□□□□□ -1.9
SHR3YDL212W DEP1P31385 405 aa3.18□□□□□ -1.9
SHR3YDL212W DOA1P36037 715 aa3.18□□□□□ -1.9
SHR3YDL212W EFM4P40516 257 aa3.18□□□□□ -1.9
SHR3YDL212W BUD27P43573 796 aaKnown RBP RIP-Chip data3.18□□□□□ -1.9not detected
Retrieved 100 of 5,963 RNA–protein pairs in 54.8 ms