RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAR1	Q0140	FAR10	Q06001	478 aa		1.86	□□□□□ -2.11
VAR1	Q0140	SRV2	P17555	526 aa	Known RBP	1.85	□□□□□ -2.11
VAR1	Q0140	NIP1	P32497	812 aa	Known RBP	1.85	□□□□□ -2.11
VAR1	Q0140	UTR5	P32630	166 aa		1.85	□□□□□ -2.11
VAR1	Q0140	SRB2	P34162	210 aa		1.85	□□□□□ -2.11
VAR1	Q0140	LSM12	P38828	187 aa	Known RBP	1.85	□□□□□ -2.11
VAR1	Q0140	ARF3	P40994	183 aa	RIP-Chip data	1.85	□□□□□ -2.11	not detected
VAR1	Q0140	DDC1	Q08949	612 aa		1.85	□□□□□ -2.11
VAR1	Q0140	CLC1	P17891	233 aa		1.84	□□□□□ -2.11
VAR1	Q0140	HEL1	P36113	551 aa		1.84	□□□□□ -2.11
VAR1	Q0140	UTP9	P38882	575 aa	Known RBP	1.84	□□□□□ -2.11
VAR1	Q0140	YGL138C	P53122	345 aa		1.84	□□□□□ -2.11
VAR1	Q0140	TIM10	P87108	93 aa		1.84	□□□□□ -2.11
VAR1	Q0140	YDR115W	Q04598	105 aa		1.84	□□□□□ -2.11
VAR1	Q0140	YHC1	Q05900	231 aa	Known RBP	1.84	□□□□□ -2.11
VAR1	Q0140	MCT1	Q12283	360 aa		1.84	□□□□□ -2.11
VAR1	Q0140	YGP1	P38616	354 aa	Known RBP	1.83	□□□□□ -2.12
VAR1	Q0140	MRX8	Q05473	314 aa		1.83	□□□□□ -2.12
VAR1	Q0140	POM152	P39685	1337 aa		1.83	□□□□□ -2.12
VAR1	Q0140	SCH9	P11792	824 aa	Known RBP	1.82	□□□□□ -2.12
VAR1	Q0140	FUS3	P16892	353 aa	Known RBP	1.82	□□□□□ -2.12
VAR1	Q0140	EPT1	P22140	391 aa		1.82	□□□□□ -2.12
VAR1	Q0140	MSP1	P28737	362 aa		1.82	□□□□□ -2.12
VAR1	Q0140	TOA1	P32773	286 aa		1.82	□□□□□ -2.12
VAR1	Q0140	FRM2	P37261	193 aa		1.82	□□□□□ -2.12
VAR1	Q0140	COS4	P43542	379 aa		1.82	□□□□□ -2.12
VAR1	Q0140	PRP38	Q00723	242 aa	Predicted RBP	1.82	□□□□□ -2.12
VAR1	Q0140	YLR177W	Q06251	628 aa		1.82	□□□□□ -2.12
VAR1	Q0140	DIS3	Q08162	1001 aa	Known RBP	1.82	□□□□□ -2.12
VAR1	Q0140	LDB17	Q12342	491 aa		1.82	□□□□□ -2.12
VAR1	Q0140	AUS1	Q08409	1394 aa		1.82	□□□□□ -2.12
VAR1	Q0140	ADE4	P04046	510 aa	Known RBP	1.81	□□□□□ -2.12
VAR1	Q0140	ECM8	P38246	354 aa		1.81	□□□□□ -2.12
VAR1	Q0140	INP2	Q03824	705 aa		1.81	□□□□□ -2.12
VAR1	Q0140	ATP1	P07251	545 aa	Known RBP	1.8	□□□□□ -2.12
VAR1	Q0140	SSC1	P0CS90	654 aa	Known RBP	1.8	□□□□□ -2.12
VAR1	Q0140	KEG1	P43614	200 aa		1.8	□□□□□ -2.12
VAR1	Q0140	MSC3	Q05812	728 aa		1.8	□□□□□ -2.12
VAR1	Q0140	SRO7	Q12038	1033 aa		1.8	□□□□□ -2.12
VAR1	Q0140	PAB1	P04147	577 aa	Known RBP RIP-Chip data	1.79	□□□□□ -2.12	not detected
VAR1	Q0140	IMP2'	P32351	346 aa		1.79	□□□□□ -2.12
VAR1	Q0140	YIL059C	P40520	121 aa		1.79	□□□□□ -2.12
VAR1	Q0140	SKO1	Q02100	647 aa		1.79	□□□□□ -2.12
VAR1	Q0140	BEM2	P39960	2167 aa	Known RBP	1.79	□□□□□ -2.12
VAR1	Q0140	GFD2	P25370	566 aa	Known RBP	1.78	□□□□□ -2.12
VAR1	Q0140	YPT35	P38815	214 aa	Known RBP	1.78	□□□□□ -2.12
VAR1	Q0140	RRT13	P40042	185 aa		1.78	□□□□□ -2.12
VAR1	Q0140	YGR117C	P53270	476 aa		1.78	□□□□□ -2.12
VAR1	Q0140	VAC7	P53950	1165 aa		1.78	□□□□□ -2.12
VAR1	Q0140	SPR6	Q01684	191 aa		1.78	□□□□□ -2.12
VAR1	Q0140	PCL9	Q12477	304 aa		1.78	□□□□□ -2.12
VAR1	Q0140	MET17	P06106	444 aa		1.77	□□□□□ -2.13
VAR1	Q0140	RPS18A	P0CX55	146 aa	Known RBP	1.77	□□□□□ -2.13
VAR1	Q0140	RPS18B	P0CX56	146 aa	Predicted RBP	1.77	□□□□□ -2.13
VAR1	Q0140	ALG1	P16661	449 aa		1.77	□□□□□ -2.13
VAR1	Q0140	SPO23	P33757	523 aa		1.77	□□□□□ -2.13
VAR1	Q0140	SCC4	P40090	624 aa		1.77	□□□□□ -2.13
VAR1	Q0140	REX2	P54964	269 aa	Known RBP	1.77	□□□□□ -2.13
VAR1	Q0140	KAP120	Q02932	1032 aa		1.77	□□□□□ -2.13
VAR1	Q0140	SFM1	Q12314	213 aa		1.77	□□□□□ -2.13
VAR1	Q0140	HMS1	Q12398	434 aa		1.77	□□□□□ -2.13
VAR1	Q0140	ROX1	P25042	368 aa		1.76	□□□□□ -2.13
VAR1	Q0140	PPQ1	P32945	549 aa		1.76	□□□□□ -2.13
VAR1	Q0140	TRF5	P48561	642 aa	Known RBP	1.76	□□□□□ -2.13
VAR1	Q0140	YOR376W	Q08900	122 aa		1.76	□□□□□ -2.13
VAR1	Q0140	YOR338W	Q99326	363 aa		1.76	□□□□□ -2.13
VAR1	Q0140	COX3	P00420	269 aa		1.75	□□□□□ -2.13
VAR1	Q0140	CKA2	P19454	339 aa		1.75	□□□□□ -2.13
VAR1	Q0140	DBP7	P36120	742 aa	Known RBP	1.75	□□□□□ -2.13
VAR1	Q0140	YJR030C	P47101	745 aa		1.75	□□□□□ -2.13
VAR1	Q0140	TRM112	P53738	135 aa	Predicted RBP	1.75	□□□□□ -2.13
VAR1	Q0140	HIF1	Q12373	385 aa		1.75	□□□□□ -2.13
VAR1	Q0140	DAL5	P15365	543 aa		1.74	□□□□□ -2.13
VAR1	Q0140	SPS19	P32573	292 aa	Known RBP	1.74	□□□□□ -2.13
VAR1	Q0140	SKG6	P32900	734 aa	Predicted RBP	1.74	□□□□□ -2.13
VAR1	Q0140	SAS3	P34218	831 aa		1.74	□□□□□ -2.13
VAR1	Q0140	SDH4	P37298	181 aa		1.74	□□□□□ -2.13
VAR1	Q0140	SHE3	P38272	425 aa	Known RBP	1.74	□□□□□ -2.13
VAR1	Q0140	GPI16	P38875	610 aa		1.74	□□□□□ -2.13
VAR1	Q0140	HEM14	P40012	539 aa		1.74	□□□□□ -2.13
VAR1	Q0140	YER079W	P40052	210 aa	Known RBP	1.74	□□□□□ -2.13
VAR1	Q0140	RNH201	P53942	307 aa		1.74	□□□□□ -2.13
VAR1	Q0140	OCA2	P53949	197 aa		1.74	□□□□□ -2.13
VAR1	Q0140	ASA1	Q06822	443 aa		1.74	□□□□□ -2.13
VAR1	Q0140	YOL159C-A	Q3E769	90 aa		1.74	□□□□□ -2.13
VAR1	Q0140	CKA1	P15790	372 aa		1.73	□□□□□ -2.13
VAR1	Q0140	YBR241C	P38142	488 aa		1.73	□□□□□ -2.13
VAR1	Q0140	GPX2	P38143	162 aa		1.73	□□□□□ -2.13
VAR1	Q0140	MMF1	P40185	145 aa	Known RBP	1.73	□□□□□ -2.13
VAR1	Q0140	RMI1	Q02685	241 aa		1.73	□□□□□ -2.13
VAR1	Q0140	RPN9	Q04062	393 aa	Known RBP	1.73	□□□□□ -2.13
VAR1	Q0140	VTI1	Q04338	217 aa		1.73	□□□□□ -2.13
VAR1	Q0140	DCS1	Q06151	350 aa		1.73	□□□□□ -2.13
VAR1	Q0140	DST1	P07273	309 aa		1.72	□□□□□ -2.13
VAR1	Q0140	URA4	P20051	364 aa		1.72	□□□□□ -2.13
VAR1	Q0140	CLB3	P24870	427 aa		1.72	□□□□□ -2.13
VAR1	Q0140	SKT5	P34226	696 aa		1.72	□□□□□ -2.13
VAR1	Q0140	MCR1	P36060	302 aa	Known RBP	1.72	□□□□□ -2.13
VAR1	Q0140	ASN2	P49090	572 aa	Known RBP	1.72	□□□□□ -2.13
VAR1	Q0140	YMR130W	Q04223	302 aa		1.72	□□□□□ -2.13

Retrieved 100 of 5,963 RNA–protein pairs in 47.7 ms