RNA–Protein interactions for RNA: ENST00000611132.4

VPS36-207, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 1 (best) BASIC

Gene VPS36, Length 4,607 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-207ENST00000611132 RAB20Q9NX57 234 aa15.82■□□□□ 0.12
VPS36-207ENST00000611132 OPHN1O60890 802 aa15.82■□□□□ 0.12
VPS36-207ENST00000611132 ATF7P17544 494 aaPredicted RBP15.82■□□□□ 0.12
VPS36-207ENST00000611132 POLE2P56282 527 aa15.82■□□□□ 0.12
VPS36-207ENST00000611132 LMNB2Q03252 620 aa15.82■□□□□ 0.12
VPS36-207ENST00000611132 ZNF211Q13398 564 aaPredicted RBP15.82■□□□□ 0.12
VPS36-207ENST00000611132 ZNF219Q9P2Y4 722 aaPredicted RBP15.82■□□□□ 0.12
VPS36-207ENST00000611132 PCDHA6Q9UN73 950 aa15.82■□□□□ 0.12
VPS36-207ENST00000611132 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.82■□□□□ 0.12
VPS36-207ENST00000611132 PCDHA8Q9Y5H6 950 aa15.82■□□□□ 0.12
VPS36-207ENST00000611132 DIP2CQ9Y2E4 1556 aa15.82■□□□□ 0.12
VPS36-207ENST00000611132 ITSN1Q15811 1721 aa15.82■□□□□ 0.12
VPS36-207ENST00000611132 TTI1O43156 1089 aa15.82■□□□□ 0.12
VPS36-207ENST00000611132 ECM2O94769 699 aaPredicted RBP15.82■□□□□ 0.12
VPS36-207ENST00000611132 CSF1RP07333 972 aa15.82■□□□□ 0.12
VPS36-207ENST00000611132 CTAGE3PQ8IX95 158 aa15.82■□□□□ 0.12
VPS36-207ENST00000611132 PDCD7Q8N8D1 485 aaKnown RBP15.82■□□□□ 0.12
VPS36-207ENST00000611132 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.82■□□□□ 0.12
VPS36-207ENST00000611132 PIGBQ92521 554 aa15.82■□□□□ 0.12
VPS36-207ENST00000611132 VCPKMTQ9H867 229 aa15.82■□□□□ 0.12
VPS36-207ENST00000611132 DNAJC17Q9NVM6 304 aaKnown RBP15.82■□□□□ 0.12
VPS36-207ENST00000611132 ARHGAP42A6NI28 874 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 FOSP01100 380 aaPredicted RBP15.81■□□□□ 0.12
VPS36-207ENST00000611132 NAB2Q15742 525 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 UBE2SQ16763 222 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 FAM47EQ6ZV65 393 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 DNAI2Q9GZS0 605 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 ETNK1Q9HBU6 452 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 KLRC1P26715 233 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 MAPK4P31152 587 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 MDM2Q00987 491 aaPredicted RBP15.81■□□□□ 0.12
VPS36-207ENST00000611132 FIGNQ5HY92 759 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 DDX42Q86XP3 938 aaKnown RBP eCLIP15.81■□□□□ 0.12
VPS36-207ENST00000611132 C3orf20Q8ND61 904 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 CCDC127Q96BQ5 260 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 MLXIPLQ9NP71 852 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 DNAJC12Q9UKB3 198 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 PNMA2Q9UL42 364 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 EXOC1LA0A1B0GW35 172 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 H0Y3Z8 333 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 CHN1P15882 459 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 CHRNA3P32297 505 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 CDK17Q00537 523 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 KCNV2Q8TDN2 545 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 CAVIN3Q969G5 261 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 CFAP57Q96MR6 1250 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 KANSL2Q9H9L4 492 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 TECPR2O15040 1411 aa15.81■□□□□ 0.12
VPS36-207ENST00000611132 A0A0U1RQJ8 604 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 CCT8L1PA6NM43 557 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 DCTN3O75935 186 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 CA4P22748 312 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 LRRC14Q15048 493 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 TRIP13Q15645 432 aaPredicted RBP15.8■□□□□ 0.12
VPS36-207ENST00000611132 UBE2TQ9NPD8 197 aaPredicted RBP15.8■□□□□ 0.12
VPS36-207ENST00000611132 SLIT1O75093 1534 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 SYF2O95926 243 aaKnown RBP15.8■□□□□ 0.12
VPS36-207ENST00000611132 HSD17B3P37058 310 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 RWDD2BP57060 319 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 CASKIN2Q8WXE0 1202 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 VCX3AQ9NNX9 186 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 BRAFP15056 766 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 MFAP3P55082 362 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 DHX34Q14147 1143 aaKnown RBP15.8■□□□□ 0.12
VPS36-207ENST00000611132 RAB3IL1Q8TBN0 382 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 ANKS1AQ92625 1134 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 CALR3Q96L12 384 aaKnown RBP15.8■□□□□ 0.12
VPS36-207ENST00000611132 CDCA7Q9BWT1 371 aaPredicted RBP15.8■□□□□ 0.12
VPS36-207ENST00000611132 E9PMD0 336 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 AGTP01019 485 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 CRKLP46109 303 aaKnown RBP15.8■□□□□ 0.12
VPS36-207ENST00000611132 NSFP46459 744 aaKnown RBP15.8■□□□□ 0.12
VPS36-207ENST00000611132 IRX4P78413 519 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 FBXO11Q86XK2 927 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 TMEM139Q8IV31 216 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 TUBB6Q9BUF5 446 aa15.8■□□□□ 0.12
VPS36-207ENST00000611132 DIAPH2O60879 1101 aa15.79■□□□□ 0.12
VPS36-207ENST00000611132 TTI2Q6NXR4 508 aa15.79■□□□□ 0.12
VPS36-207ENST00000611132 TMED8Q6PL24 325 aaPredicted RBP15.79■□□□□ 0.12
VPS36-207ENST00000611132 AENQ8WTP8 325 aaKnown RBP15.79■□□□□ 0.12
VPS36-207ENST00000611132 TMEM60Q9H2L4 133 aa15.79■□□□□ 0.12
VPS36-207ENST00000611132 IRX1P78414 480 aaPredicted RBP15.79■□□□□ 0.12
VPS36-207ENST00000611132 BFSP1Q12934 665 aa15.79■□□□□ 0.12
VPS36-207ENST00000611132 SH2D4BQ5SQS7 431 aa15.79■□□□□ 0.12
VPS36-207ENST00000611132 SRRM1Q8IYB3 904 aaKnown RBP15.79■□□□□ 0.12
VPS36-207ENST00000611132 RSAD2Q8WXG1 361 aa15.79■□□□□ 0.12
VPS36-207ENST00000611132 RFFLQ8WZ73 363 aa15.79■□□□□ 0.12
VPS36-207ENST00000611132 NR3C1P04150 777 aa15.79■□□□□ 0.12
VPS36-207ENST00000611132 NAALADL2Q58DX5 795 aa15.79■□□□□ 0.12
VPS36-207ENST00000611132 PDXDC2PQ6P474 469 aa15.79■□□□□ 0.12
VPS36-207ENST00000611132 C1orf112Q9NSG2 853 aa15.79■□□□□ 0.12
VPS36-207ENST00000611132 CNTNAP5Q8WYK1 1306 aa15.79■□□□□ 0.12
VPS36-207ENST00000611132 TRPM8Q7Z2W7 1104 aa15.79■□□□□ 0.12
VPS36-207ENST00000611132 LMNAP02545 664 aaKnown RBP15.78■□□□□ 0.12
VPS36-207ENST00000611132 HARSP12081 509 aaKnown RBP15.78■□□□□ 0.12
VPS36-207ENST00000611132 PRDX5P30044 214 aa15.78■□□□□ 0.12
VPS36-207ENST00000611132 SPARCL1Q14515 664 aa15.78■□□□□ 0.12
VPS36-207ENST00000611132 KAZNQ674X7 775 aa15.78■□□□□ 0.12
VPS36-207ENST00000611132 DPH6Q7L8W6 267 aa15.78■□□□□ 0.12
VPS36-207ENST00000611132 PROCA1Q8NCQ7 364 aaPredicted RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms