RNA–Protein interactions for RNA: YJR028W

YJR028W, Transcript of Retrotransposon TYA Gag gene co-transcribed with TYB Pol, yeast

Gene YJR028W, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YJR028W	YJR028W	RRB1	Q04225	511 aa	Known RBP	4.15	□□□□□ -1.75
YJR028W	YJR028W	YPL199C	Q08954	240 aa		4.15	□□□□□ -1.75
YJR028W	YJR028W	TPT1	Q12272	230 aa	Known RBP	4.15	□□□□□ -1.75
YJR028W	YJR028W	RRP12	Q12754	1228 aa	Known RBP	4.15	□□□□□ -1.75
YJR028W	YJR028W	RNA1	P11745	407 aa	Known RBP	4.14	□□□□□ -1.75
YJR028W	YJR028W	THR4	P16120	514 aa	Known RBP	4.14	□□□□□ -1.75
YJR028W	YJR028W	PTK1	P36002	662 aa	Predicted RBP	4.14	□□□□□ -1.75
YJR028W	YJR028W	KKQ8	P36004	724 aa		4.14	□□□□□ -1.75
YJR028W	YJR028W	YDR089W	P38966	869 aa		4.14	□□□□□ -1.75
YJR028W	YJR028W	MMF1	P40185	145 aa	Known RBP	4.14	□□□□□ -1.75
YJR028W	YJR028W	OSW5	P40219	148 aa		4.14	□□□□□ -1.75
YJR028W	YJR028W	MEP1	P40260	492 aa		4.14	□□□□□ -1.75
YJR028W	YJR028W	AZR1	P50080	613 aa		4.14	□□□□□ -1.75
YJR028W	YJR028W	RRN9	P53437	365 aa		4.14	□□□□□ -1.75
YJR028W	YJR028W	COS1	P53822	381 aa		4.14	□□□□□ -1.75
YJR028W	YJR028W	PRM1	P53835	661 aa		4.14	□□□□□ -1.75
YJR028W	YJR028W	HXT11	P54862	567 aa		4.14	□□□□□ -1.75
YJR028W	YJR028W	YML122C	Q03207	126 aa		4.14	□□□□□ -1.75
YJR028W	YJR028W	VPS20	Q04272	221 aa		4.14	□□□□□ -1.75
YJR028W	YJR028W	RTC5	Q12108	567 aa	Known RBP	4.14	□□□□□ -1.75
YJR028W	YJR028W	SET6	Q12529	373 aa		4.14	□□□□□ -1.75
YJR028W	YJR028W	MCK1	P21965	375 aa	Known RBP	4.13	□□□□□ -1.75
YJR028W	YJR028W	YBR056W	P38081	501 aa		4.13	□□□□□ -1.75
YJR028W	YJR028W	YHR122W	P38829	231 aa		4.13	□□□□□ -1.75
YJR028W	YJR028W	SPG5	P42933	373 aa		4.13	□□□□□ -1.75
YJR028W	YJR028W	TOS3	P43637	560 aa		4.13	□□□□□ -1.75
YJR028W	YJR028W	SFH5	P47008	294 aa		4.13	□□□□□ -1.75
YJR028W	YJR028W	YDL186W	P48568	277 aa		4.13	□□□□□ -1.75
YJR028W	YJR028W	RET3	P53600	189 aa		4.13	□□□□□ -1.75
YJR028W	YJR028W	SMA2	Q04658	369 aa		4.13	□□□□□ -1.75
YJR028W	YJR028W	BCH1	Q05029	724 aa		4.13	□□□□□ -1.75
YJR028W	YJR028W	PEX27	Q08580	376 aa		4.13	□□□□□ -1.75
YJR028W	YJR028W	THP3	Q12049	470 aa	Known RBP	4.13	□□□□□ -1.75
YJR028W	YJR028W	ARF1	P11076	181 aa	Known RBP	4.12	□□□□□ -1.75
YJR028W	YJR028W	SLY1	P22213	666 aa		4.12	□□□□□ -1.75
YJR028W	YJR028W	SLM5	P25345	492 aa	Known RBP	4.12	□□□□□ -1.75
YJR028W	YJR028W	YBL028C	P38202	106 aa		4.12	□□□□□ -1.75
YJR028W	YJR028W	LCP5	P40079	357 aa	Predicted RBP	4.12	□□□□□ -1.75
YJR028W	YJR028W	OST1	P41543	476 aa	Known RBP	4.12	□□□□□ -1.75
YJR028W	YJR028W	HST1	P53685	503 aa		4.12	□□□□□ -1.75
YJR028W	YJR028W	ASA1	Q06822	443 aa		4.12	□□□□□ -1.75
YJR028W	YJR028W	NCA2	Q12374	616 aa		4.12	□□□□□ -1.75
YJR028W	YJR028W	AIM45	Q12480	344 aa	Known RBP	4.12	□□□□□ -1.75
YJR028W	YJR028W	RPS16A	P0CX51	143 aa	Known RBP	4.11	□□□□□ -1.75
YJR028W	YJR028W	RPS16B	P0CX52	143 aa	Known RBP	4.11	□□□□□ -1.75
YJR028W	YJR028W	GRR1	P24814	1151 aa		4.11	□□□□□ -1.75
YJR028W	YJR028W	SPT10	P35208	640 aa		4.11	□□□□□ -1.75
YJR028W	YJR028W	YBR139W	P38109	508 aa		4.11	□□□□□ -1.75
YJR028W	YJR028W	RIB5	P38145	238 aa		4.11	□□□□□ -1.75
YJR028W	YJR028W	SAD1	P43589	448 aa		4.11	□□□□□ -1.75
YJR028W	YJR028W	YGR117C	P53270	476 aa		4.11	□□□□□ -1.75
YJR028W	YJR028W	LSC1	P53598	329 aa	Known RBP	4.11	□□□□□ -1.75
YJR028W	YJR028W	IBD2	P53892	351 aa		4.11	□□□□□ -1.75
YJR028W	YJR028W	STE23	Q06010	1027 aa		4.11	□□□□□ -1.75
YJR028W	YJR028W	LDS2	Q08218	356 aa		4.11	□□□□□ -1.75
YJR028W	YJR028W	RAX1	Q08760	435 aa		4.11	□□□□□ -1.75
YJR028W	YJR028W	AFT2	Q08957	416 aa		4.11	□□□□□ -1.75
YJR028W	YJR028W	MDY2	Q12285	212 aa		4.11	□□□□□ -1.75
YJR028W	YJR028W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.1	□□□□□ -1.75	not detected
YJR028W	YJR028W	ATP1	P07251	545 aa	Known RBP	4.1	□□□□□ -1.75
YJR028W	YJR028W	SSC1	P0CS90	654 aa	Known RBP	4.1	□□□□□ -1.75
YJR028W	YJR028W	EXG1	P23776	448 aa	Known RBP	4.1	□□□□□ -1.75
YJR028W	YJR028W	SPS22	P25380	463 aa		4.1	□□□□□ -1.75
YJR028W	YJR028W	YCL068C	P25593	260 aa		4.1	□□□□□ -1.75
YJR028W	YJR028W	DOA1	P36037	715 aa		4.1	□□□□□ -1.75
YJR028W	YJR028W	ATP3	P38077	311 aa	Known RBP	4.1	□□□□□ -1.75
YJR028W	YJR028W	PCL7	P40186	285 aa		4.1	□□□□□ -1.75
YJR028W	YJR028W	JLP2	P40206	208 aa		4.1	□□□□□ -1.75
YJR028W	YJR028W	ATM1	P40416	690 aa		4.1	□□□□□ -1.75
YJR028W	YJR028W	MKT1	P40850	830 aa	Known RBP	4.1	□□□□□ -1.75
YJR028W	YJR028W	YJL213W	P40896	331 aa		4.1	□□□□□ -1.75
YJR028W	YJR028W	ABM1	P47146	123 aa		4.1	□□□□□ -1.75
YJR028W	YJR028W	MSO1	P53604	210 aa	Known RBP	4.1	□□□□□ -1.75
YJR028W	YJR028W	WSC2	P53832	503 aa		4.1	□□□□□ -1.75
YJR028W	YJR028W	ERV25	P54837	211 aa	Known RBP	4.1	□□□□□ -1.75
YJR028W	YJR028W	ABZ2	Q03266	374 aa		4.1	□□□□□ -1.75
YJR028W	YJR028W	MSC3	Q05812	728 aa		4.1	□□□□□ -1.75
YJR028W	YJR028W	SNX3	Q08826	162 aa	Known RBP	4.1	□□□□□ -1.75
YJR028W	YJR028W	CAP2	P13517	287 aa		4.09	□□□□□ -1.75
YJR028W	YJR028W	DBP3	P20447	523 aa	Known RBP	4.09	□□□□□ -1.75
YJR028W	YJR028W	DBR1	P24309	405 aa	Known RBP	4.09	□□□□□ -1.75
YJR028W	YJR028W	MSK1	P32048	576 aa		4.09	□□□□□ -1.75
YJR028W	YJR028W	YEF1	P32622	495 aa		4.09	□□□□□ -1.75
YJR028W	YJR028W	TMT1	P32643	299 aa		4.09	□□□□□ -1.75
YJR028W	YJR028W	SKT5	P34226	696 aa		4.09	□□□□□ -1.75
YJR028W	YJR028W	NAT2	P37293	288 aa		4.09	□□□□□ -1.75
YJR028W	YJR028W	YBP1	P38315	674 aa		4.09	□□□□□ -1.75
YJR028W	YJR028W	MDM31	P38880	579 aa		4.09	□□□□□ -1.75
YJR028W	YJR028W	GRS2	Q06817	618 aa		4.09	□□□□□ -1.75
YJR028W	YJR028W	YOP1	Q12402	180 aa		4.09	□□□□□ -1.75
YJR028W	YJR028W	CEX1	Q12453	761 aa		4.09	□□□□□ -1.75
YJR028W	YJR028W	CBP2	P03874	630 aa	Predicted RBP	4.08	□□□□□ -1.76
YJR028W	YJR028W	TPK3	P05986	398 aa		4.08	□□□□□ -1.76
YJR028W	YJR028W	GDH1	P07262	454 aa	Known RBP	4.08	□□□□□ -1.76
YJR028W	YJR028W	MAS1	P10507	462 aa		4.08	□□□□□ -1.76
YJR028W	YJR028W	MAS2	P11914	482 aa		4.08	□□□□□ -1.76
YJR028W	YJR028W	PHA2	P32452	334 aa		4.08	□□□□□ -1.76
YJR028W	YJR028W	MRP4	P32902	394 aa		4.08	□□□□□ -1.76
YJR028W	YJR028W	MCR1	P36060	302 aa	Known RBP	4.08	□□□□□ -1.76
YJR028W	YJR028W	CHK1	P38147	527 aa		4.08	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 19.9 ms