RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C SPE3Q12074 293 aaKnown RBP1.4□□□□□ -2.19
VPS54YDR027C TY1B-AO13527 1196 aaKnown RBP1.39□□□□□ -2.19
VPS54YDR027C RHO2P06781 192 aa1.39□□□□□ -2.19
VPS54YDR027C RIP1P08067 215 aa1.39□□□□□ -2.19
VPS54YDR027C SEC63P14906 663 aa1.39□□□□□ -2.19
VPS54YDR027C CLC1P17891 233 aa1.39□□□□□ -2.19
VPS54YDR027C HIR2P32480 875 aa1.39□□□□□ -2.19
VPS54YDR027C VPH1P32563 840 aaKnown RBP1.39□□□□□ -2.19
VPS54YDR027C FRE1P32791 686 aa1.39□□□□□ -2.19
VPS54YDR027C MRP4P32902 394 aa1.39□□□□□ -2.19
VPS54YDR027C DRE2P36152 348 aa1.39□□□□□ -2.19
VPS54YDR027C PIM1P36775 1133 aa1.39□□□□□ -2.19
VPS54YDR027C SWD3P38123 315 aa1.39□□□□□ -2.19
VPS54YDR027C SCD6P45978 349 aaKnown RBP RIP-Chip data1.39□□□□□ -2.19 RIP-Chip
VPS54YDR027C COS5P47187 383 aa1.39□□□□□ -2.19
VPS54YDR027C YGR016WP53209 190 aa1.39□□□□□ -2.19
VPS54YDR027C YGR111WP53265 400 aa1.39□□□□□ -2.19
VPS54YDR027C SKO1Q02100 647 aa1.39□□□□□ -2.19
VPS54YDR027C ELP3Q02908 557 aaKnown RBP1.39□□□□□ -2.19
VPS54YDR027C IVY1Q04934 453 aa1.39□□□□□ -2.19
VPS54YDR027C MDM30Q05930 598 aa1.39□□□□□ -2.19
VPS54YDR027C DCS1Q06151 350 aa1.39□□□□□ -2.19
VPS54YDR027C VPS74Q06385 345 aa1.39□□□□□ -2.19
VPS54YDR027C COS7Q07788 383 aa1.39□□□□□ -2.19
VPS54YDR027C DIS3Q08162 1001 aaKnown RBP1.39□□□□□ -2.19
VPS54YDR027C UAF30Q08747 228 aa1.39□□□□□ -2.19
VPS54YDR027C RPN5Q12250 445 aaKnown RBP1.39□□□□□ -2.19
VPS54YDR027C HRT3Q12347 344 aa1.39□□□□□ -2.19
VPS54YDR027C DYN1P36022 4092 aa1.39□□□□□ -2.19
VPS54YDR027C GEX1P25596 615 aa1.39□□□□□ -2.19
VPS54YDR027C ARO2P28777 376 aaKnown RBP1.39□□□□□ -2.19
VPS54YDR027C HEL1P36113 551 aa1.39□□□□□ -2.19
VPS54YDR027C NTC20P38302 140 aaPredicted RBP1.39□□□□□ -2.19
VPS54YDR027C YHR054CP38780 354 aa1.39□□□□□ -2.19
VPS54YDR027C YPT35P38815 214 aaKnown RBP1.39□□□□□ -2.19
VPS54YDR027C CCT2P39076 527 aaKnown RBP1.39□□□□□ -2.19
VPS54YDR027C GDI1P39958 451 aaKnown RBP1.39□□□□□ -2.19
VPS54YDR027C POP1P41812 875 aa1.39□□□□□ -2.19
VPS54YDR027C YFL067WP43537 175 aa1.39□□□□□ -2.19
VPS54YDR027C PEX25Q02969 394 aa1.39□□□□□ -2.19
VPS54YDR027C SLD5Q03406 294 aa1.39□□□□□ -2.19
VPS54YDR027C KEL3Q08979 651 aaPredicted RBP1.39□□□□□ -2.19
VPS54YDR027C VPS54Q12071 889 aa1.39□□□□□ -2.19
VPS54YDR027C COX3P00420 269 aa1.38□□□□□ -2.19
VPS54YDR027C GPH1P06738 902 aaKnown RBP1.38□□□□□ -2.19
VPS54YDR027C TPM1P17536 199 aaKnown RBP1.38□□□□□ -2.19
VPS54YDR027C SRV2P17555 526 aaKnown RBP1.38□□□□□ -2.19
VPS54YDR027C KRE2P27809 442 aa1.38□□□□□ -2.19
VPS54YDR027C BRF1P29056 596 aa1.38□□□□□ -2.19
VPS54YDR027C PUP2P32379 260 aa1.38□□□□□ -2.19
VPS54YDR027C LTV1P34078 463 aa1.38□□□□□ -2.19
VPS54YDR027C VHC1P38329 1120 aa1.38□□□□□ -2.19
VPS54YDR027C FAD1P38913 306 aa1.38□□□□□ -2.19
VPS54YDR027C HAT2P39984 401 aa1.38□□□□□ -2.19
VPS54YDR027C BUD27P43573 796 aaKnown RBP RIP-Chip data1.38□□□□□ -2.19not detected
VPS54YDR027C RPS0BP46654 252 aaKnown RBP1.38□□□□□ -2.19
VPS54YDR027C URB2P47108 1174 aa1.38□□□□□ -2.19
VPS54YDR027C RMD9P53140 646 aaKnown RBP1.38□□□□□ -2.19
VPS54YDR027C IRC15Q02733 499 aa1.38□□□□□ -2.19
VPS54YDR027C YMR130WQ04223 302 aa1.38□□□□□ -2.19
VPS54YDR027C YDR286CQ05530 114 aa1.38□□□□□ -2.19
VPS54YDR027C BNA5Q05979 453 aa1.38□□□□□ -2.19
VPS54YDR027C TMS1Q12116 473 aa1.38□□□□□ -2.19
VPS54YDR027C NFI1Q12216 726 aa1.38□□□□□ -2.19
VPS54YDR027C ERV2Q12284 196 aa1.38□□□□□ -2.19
VPS54YDR027C FRE6Q12473 712 aa1.38□□□□□ -2.19
VPS54YDR027C CLN3P13365 580 aa1.38□□□□□ -2.19
VPS54YDR027C GLK1P17709 500 aaKnown RBP1.38□□□□□ -2.19
VPS54YDR027C RHB1P25378 209 aa1.38□□□□□ -2.19
VPS54YDR027C SIN4P32259 974 aa1.38□□□□□ -2.19
VPS54YDR027C GPI1P53306 609 aa1.38□□□□□ -2.19
VPS54YDR027C HOT1Q03213 719 aa1.38□□□□□ -2.19
VPS54YDR027C YLR456WQ06199 204 aa1.38□□□□□ -2.19
VPS54YDR027C YDL012CQ12489 107 aa1.38□□□□□ -2.19
VPS54YDR027C YDR524C-BQ3E6R4 66 aa1.38□□□□□ -2.19
VPS54YDR027C RPL1AP0CX43 217 aaKnown RBP1.37□□□□□ -2.19
VPS54YDR027C RPL1BP0CX44 217 aaKnown RBP1.37□□□□□ -2.19
VPS54YDR027C ARO3P14843 370 aaKnown RBP1.37□□□□□ -2.19
VPS54YDR027C EXO70P19658 623 aa1.37□□□□□ -2.19
VPS54YDR027C RNA14P25298 677 aaKnown RBP1.37□□□□□ -2.19
VPS54YDR027C YCR007CP25354 239 aa1.37□□□□□ -2.19
VPS54YDR027C PRP21P32524 280 aaPredicted RBP1.37□□□□□ -2.19
VPS54YDR027C UTR4P32626 227 aa1.37□□□□□ -2.19
VPS54YDR027C SOR1P35497 357 aaKnown RBP1.37□□□□□ -2.19
VPS54YDR027C ADH5P38113 351 aaKnown RBP1.37□□□□□ -2.19
VPS54YDR027C MMS4P38257 691 aa1.37□□□□□ -2.19
VPS54YDR027C RFC3P38629 340 aa1.37□□□□□ -2.19
VPS54YDR027C RRP4P38792 359 aaKnown RBP1.37□□□□□ -2.19
VPS54YDR027C CAJ1P39101 391 aa1.37□□□□□ -2.19
VPS54YDR027C YIL067CP40514 678 aa1.37□□□□□ -2.19
VPS54YDR027C SAS2P40963 338 aa1.37□□□□□ -2.19
VPS54YDR027C TOM22P49334 152 aa1.37□□□□□ -2.19
VPS54YDR027C RHO5P53879 331 aaKnown RBP1.37□□□□□ -2.19
VPS54YDR027C VPS9P54787 451 aa1.37□□□□□ -2.19
VPS54YDR027C YPL107WQ02873 248 aa1.37□□□□□ -2.19
VPS54YDR027C SOR2Q07786 357 aa1.37□□□□□ -2.19
VPS54YDR027C DCI1Q08558 271 aa1.37□□□□□ -2.19
VPS54YDR027C RKM1Q08961 583 aaPredicted RBP1.37□□□□□ -2.19
VPS54YDR027C LSP1Q12230 341 aaKnown RBP1.37□□□□□ -2.19
VPS54YDR027C RPS24AP0CX31 135 aaKnown RBP1.37□□□□□ -2.19
Retrieved 100 of 5,963 RNA–protein pairs in 110.7 ms