RNA–Protein interactions for RNA: YAL059W

ECM1, Transcript of Pre-ribosomal factor involved in 60S ribosomal protein subunit export, yeast

Gene ECM1, Length 639 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ECM1	YAL059W	YJL118W	P47022	219 aa		4.81	□□□□□ -1.64
ECM1	YAL059W	YJL043W	P47053	257 aa		4.81	□□□□□ -1.64
ECM1	YAL059W	NPA3	P47122	385 aa		4.81	□□□□□ -1.64
ECM1	YAL059W	YNL092W	P53934	400 aa		4.81	□□□□□ -1.64
ECM1	YAL059W	RIM13	Q03792	727 aa		4.81	□□□□□ -1.64
ECM1	YAL059W	RRP17	Q04031	235 aa	Predicted RBP	4.81	□□□□□ -1.64
ECM1	YAL059W	POS5	Q06892	414 aa		4.81	□□□□□ -1.64
ECM1	YAL059W	TEN1	Q07921	160 aa		4.81	□□□□□ -1.64
ECM1	YAL059W	RDR1	Q08904	546 aa		4.81	□□□□□ -1.64
ECM1	YAL059W	SPO24	Q3E752	67 aa		4.81	□□□□□ -1.64
ECM1	YAL059W	LAG2	Q92325	660 aa		4.81	□□□□□ -1.64
ECM1	YAL059W	CWP1	P28319	239 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	LAC1	P28496	418 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	ZIP1	P31111	875 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	4.8	□□□□□ -1.64	not detected
ECM1	YAL059W	FRE1	P32791	686 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	RPC34	P32910	317 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	RPL32	P38061	130 aa	Known RBP	4.8	□□□□□ -1.64
ECM1	YAL059W	RTC2	P38279	296 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	PRP39	P39682	629 aa	Known RBP	4.8	□□□□□ -1.64
ECM1	YAL059W	MTW1	P39731	289 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	OPT1	P40897	799 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	ATG27	P46989	271 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	HAM1	P47119	197 aa	Known RBP	4.8	□□□□□ -1.64
ECM1	YAL059W	ABM1	P47146	123 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	RMR1	P53060	241 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	COX20	Q04935	205 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	FUS2	Q05670	677 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	ARR2	Q06597	130 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	SHS1	Q07657	551 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	GEP3	Q08622	556 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	DSE3	Q08729	430 aa		4.8	□□□□□ -1.64
ECM1	YAL059W	PAA1	Q12447	191 aa	Known RBP	4.8	□□□□□ -1.64
ECM1	YAL059W	COX3	P00420	269 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	MSF1	P08425	469 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	NFT1	P0CE68	1218 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	NHP6B	P11633	99 aa	Known RBP	4.79	□□□□□ -1.64
ECM1	YAL059W	MDM10	P18409	493 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	COQ1	P18900	473 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	NUP1	P20676	1076 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	APA2	P22108	325 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	MBR1	P23493	339 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	RHB1	P25378	209 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	GDA1	P32621	518 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	SKG6	P32900	734 aa	Predicted RBP	4.79	□□□□□ -1.64
ECM1	YAL059W	DUG2	P38149	878 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	IML3	P38265	245 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	SNL1	P40548	159 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	SPG5	P42933	373 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	RPN11	P43588	306 aa	Known RBP	4.79	□□□□□ -1.64
ECM1	YAL059W	YFR020W	P43600	232 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	HIT1	P46973	164 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	BNA3	P47039	444 aa	Known RBP	4.79	□□□□□ -1.64
ECM1	YAL059W	BET4	Q00618	327 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	RPM2	Q02773	1202 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	MYO5	Q04439	1219 aa	Known RBP	4.79	□□□□□ -1.64
ECM1	YAL059W	SMC5	Q08204	1093 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	ATG31	Q12421	196 aa		4.79	□□□□□ -1.64
ECM1	YAL059W	AHA1	Q12449	350 aa	Known RBP	4.79	□□□□□ -1.64
ECM1	YAL059W	RRP12	Q12754	1228 aa	Known RBP	4.79	□□□□□ -1.64
ECM1	YAL059W	RAV1	P47104	1357 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	TDH2	P00358	332 aa	Known RBP	4.78	□□□□□ -1.64
ECM1	YAL059W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	4.78	□□□□□ -1.64	not detected
ECM1	YAL059W	COR1	P07256	457 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	RIP1	P08067	215 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	RPL18A	P0CX49	186 aa	Known RBP	4.78	□□□□□ -1.64
ECM1	YAL059W	RPL18B	P0CX50	186 aa	Known RBP	4.78	□□□□□ -1.64
ECM1	YAL059W	PCT1	P13259	424 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	POL30	P15873	258 aa	Known RBP	4.78	□□□□□ -1.64
ECM1	YAL059W	KGD2	P19262	463 aa	Predicted RBP	4.78	□□□□□ -1.64
ECM1	YAL059W	CKA2	P19454	339 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	YSR3	P23501	404 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	YCP4	P25349	247 aa	Known RBP	4.78	□□□□□ -1.64
ECM1	YAL059W	CSM1	P25651	190 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	PPA2	P28239	310 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	YSC83	P32792	385 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	REC114	P32841	428 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	GDH2	P33327	1092 aa	Known RBP	4.78	□□□□□ -1.64
ECM1	YAL059W	AIM29	P36154	155 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	MMS21	P38632	267 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	PCF11	P39081	626 aa	Predicted RBP	4.78	□□□□□ -1.64
ECM1	YAL059W	MBB1	P39534	108 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	EXO1	P39875	702 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	CDC40	P40968	455 aa	Predicted RBP	4.78	□□□□□ -1.64
ECM1	YAL059W	TDA10	P42938	290 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	LIF1	P53150	421 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	ZPR1	P53303	486 aa	Known RBP	4.78	□□□□□ -1.64
ECM1	YAL059W	ENT5	Q03769	411 aa	Known RBP	4.78	□□□□□ -1.64
ECM1	YAL059W	GIM5	Q04493	163 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	SYO1	Q07395	620 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	YDL242W	Q07746	117 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	VIK1	Q12045	647 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	YDR262W	Q12331	272 aa		4.78	□□□□□ -1.64
ECM1	YAL059W	PGK1	P00560	416 aa	Known RBP	4.77	□□□□□ -1.65
ECM1	YAL059W	RAD3	P06839	778 aa		4.77	□□□□□ -1.65
ECM1	YAL059W	YLL053C	P0CD98	152 aa		4.77	□□□□□ -1.65
ECM1	YAL059W	MATALPHA1	P0CY06	175 aa		4.77	□□□□□ -1.65
ECM1	YAL059W	HMLALPHA1	P0CY07	175 aa		4.77	□□□□□ -1.65
ECM1	YAL059W	SGV1	P23293	657 aa	Known RBP	4.77	□□□□□ -1.65
ECM1	YAL059W	PBN1	P25580	416 aa		4.77	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 90.6 ms