RNA–Protein interactions for RNA: YDR257C

RKM4, Transcript of Ribosomal lysine methyltransferase, yeast

Gene RKM4, Length 1,485 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKM4	YDR257C	CRM1	P30822	1084 aa	Known RBP	4.9	□□□□□ -1.62
RKM4	YDR257C	ECM25	P32525	599 aa		4.9	□□□□□ -1.62
RKM4	YDR257C	HAT2	P39984	401 aa		4.9	□□□□□ -1.62
RKM4	YDR257C	YIF1	P53845	314 aa	Known RBP	4.9	□□□□□ -1.62
RKM4	YDR257C	CRZ1	P53968	678 aa		4.9	□□□□□ -1.62
RKM4	YDR257C	RCF1	Q03713	159 aa		4.9	□□□□□ -1.62
RKM4	YDR257C	MDM30	Q05930	598 aa		4.9	□□□□□ -1.62
RKM4	YDR257C	GPM3	Q12326	303 aa		4.9	□□□□□ -1.62
RKM4	YDR257C	SCEI	P03882	235 aa		4.89	□□□□□ -1.63
RKM4	YDR257C	YML002W	P0CF17	737 aa		4.89	□□□□□ -1.63
RKM4	YDR257C	RPL20A	P0CX23	172 aa	Known RBP	4.89	□□□□□ -1.63
RKM4	YDR257C	RPL20B	P0CX24	172 aa	Predicted RBP	4.89	□□□□□ -1.63
RKM4	YDR257C	ATR1	P13090	542 aa		4.89	□□□□□ -1.63
RKM4	YDR257C	YCR100C	P25606	316 aa		4.89	□□□□□ -1.63
RKM4	YDR257C	YCR022C	P25620	114 aa		4.89	□□□□□ -1.63
RKM4	YDR257C	LTV1	P34078	463 aa		4.89	□□□□□ -1.63
RKM4	YDR257C	BLI1	P35727	113 aa		4.89	□□□□□ -1.63
RKM4	YDR257C	MTC4	P38335	694 aa	Known RBP	4.89	□□□□□ -1.63
RKM4	YDR257C	YJL055W	P47044	245 aa		4.89	□□□□□ -1.63
RKM4	YDR257C	OAZ1	Q02803	292 aa		4.89	□□□□□ -1.63
RKM4	YDR257C	HEL2	Q05580	639 aa	Known RBP	4.89	□□□□□ -1.63
RKM4	YDR257C	DCI1	Q08558	271 aa		4.89	□□□□□ -1.63
RKM4	YDR257C	AEP3	Q12089	606 aa		4.89	□□□□□ -1.63
RKM4	YDR257C	SET6	Q12529	373 aa		4.89	□□□□□ -1.63
RKM4	YDR257C	HSP82	P02829	709 aa	Known RBP	4.88	□□□□□ -1.63
RKM4	YDR257C	NDI1	P32340	513 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	PMU1	P36069	295 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	YCR041W	P37265	110 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	JEM1	P40358	645 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	LCB2	P40970	561 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	TRS85	P46944	698 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	YIP1	P53039	248 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	ODC1	Q03028	310 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	MTR10	Q99189	972 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	MNE1	P24720	663 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	MDM31	P38880	579 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	RPH1	P39956	796 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	YAT2	P40017	923 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	RPR2	P40571	144 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	YJL132W	P47014	750 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	TOM22	P49334	152 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	ERO1	Q03103	563 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	SPE3	Q12074	293 aa	Known RBP	4.88	□□□□□ -1.63
RKM4	YDR257C	AYT1	Q12226	474 aa		4.88	□□□□□ -1.63
RKM4	YDR257C	PAR32	Q12515	295 aa	Known RBP	4.88	□□□□□ -1.63
RKM4	YDR257C	TY1B-A	O13527	1196 aa	Known RBP	4.87	□□□□□ -1.63
RKM4	YDR257C	PRO3	P32263	286 aa	Known RBP	4.87	□□□□□ -1.63
RKM4	YDR257C	SOR1	P35497	357 aa	Known RBP	4.87	□□□□□ -1.63
RKM4	YDR257C	DHH1	P39517	506 aa	Known RBP	4.87	□□□□□ -1.63
RKM4	YDR257C	GDI1	P39958	451 aa	Known RBP	4.87	□□□□□ -1.63
RKM4	YDR257C	SER3	P40054	469 aa		4.87	□□□□□ -1.63
RKM4	YDR257C	GCD10	P41814	478 aa		4.87	□□□□□ -1.63
RKM4	YDR257C	YFR016C	P43597	1233 aa	Known RBP	4.87	□□□□□ -1.63
RKM4	YDR257C	OCA2	P53949	197 aa		4.87	□□□□□ -1.63
RKM4	YDR257C	SOR2	Q07786	357 aa		4.87	□□□□□ -1.63
RKM4	YDR257C	REX4	Q08237	289 aa		4.87	□□□□□ -1.63
RKM4	YDR257C	NDD1	Q08887	554 aa		4.87	□□□□□ -1.63
RKM4	YDR257C	MDL1	P33310	695 aa		4.86	□□□□□ -1.63
RKM4	YDR257C	RRN10	P38204	145 aa		4.86	□□□□□ -1.63
RKM4	YDR257C	VHS2	P40463	436 aa		4.86	□□□□□ -1.63
RKM4	YDR257C	AVT4	P50944	713 aa		4.86	□□□□□ -1.63
RKM4	YDR257C	POP6	P53218	158 aa		4.86	□□□□□ -1.63
RKM4	YDR257C	ARK1	P53974	638 aa		4.86	□□□□□ -1.63
RKM4	YDR257C	YMR317W	Q04893	1140 aa		4.86	□□□□□ -1.63
RKM4	YDR257C	UAF30	Q08747	228 aa		4.86	□□□□□ -1.63
RKM4	YDR257C	BUG1	Q12191	341 aa		4.86	□□□□□ -1.63
RKM4	YDR257C	TIP41	Q12199	356 aa		4.86	□□□□□ -1.63
RKM4	YDR257C	PUT3	P25502	979 aa	Predicted RBP	4.85	□□□□□ -1.63
RKM4	YDR257C	ATS1	P31386	333 aa		4.85	□□□□□ -1.63
RKM4	YDR257C	GLC7	P32598	312 aa	Known RBP	4.85	□□□□□ -1.63
RKM4	YDR257C	SSN8	P47821	323 aa		4.85	□□□□□ -1.63
RKM4	YDR257C	PIR3	Q03180	325 aa		4.85	□□□□□ -1.63
RKM4	YDR257C	TAF12	Q03761	539 aa		4.85	□□□□□ -1.63
RKM4	YDR257C	SGT1	Q08446	395 aa		4.85	□□□□□ -1.63
RKM4	YDR257C	MUM3	Q08750	479 aa		4.85	□□□□□ -1.63
RKM4	YDR257C	LPD1	P09624	499 aa	Known RBP	4.84	□□□□□ -1.63
RKM4	YDR257C	SMY1	P32364	656 aa	Known RBP	4.84	□□□□□ -1.63
RKM4	YDR257C	SWH1	P35845	1188 aa		4.84	□□□□□ -1.63
RKM4	YDR257C	LYS1	P38998	373 aa	RIP-Chip data	4.84	□□□□□ -1.63	not detected
RKM4	YDR257C	YJL213W	P40896	331 aa		4.84	□□□□□ -1.63
RKM4	YDR257C	PHO86	P46956	311 aa		4.84	□□□□□ -1.63
RKM4	YDR257C	COS10	P52924	374 aa		4.84	□□□□□ -1.63
RKM4	YDR257C	CAF40	P53829	373 aa		4.84	□□□□□ -1.63
RKM4	YDR257C	MRP51	Q02950	344 aa		4.84	□□□□□ -1.63
RKM4	YDR257C	RPN5	Q12250	445 aa	Known RBP	4.84	□□□□□ -1.63
RKM4	YDR257C	LOS1	P33418	1100 aa	Predicted RBP	4.83	□□□□□ -1.64
RKM4	YDR257C	ZTA1	P38230	334 aa	Known RBP	4.83	□□□□□ -1.64
RKM4	YDR257C	RRT5	P43607	289 aa		4.83	□□□□□ -1.64
RKM4	YDR257C	HMS2	P47175	358 aa		4.83	□□□□□ -1.64
RKM4	YDR257C	PPT2	Q12036	173 aa		4.83	□□□□□ -1.64
RKM4	YDR257C	ARG4	P04076	463 aa	Predicted RBP	4.82	□□□□□ -1.64
RKM4	YDR257C	HEM2	P05373	342 aa		4.82	□□□□□ -1.64
RKM4	YDR257C	MCK1	P21965	375 aa	Known RBP	4.82	□□□□□ -1.64
RKM4	YDR257C	ASC1	P38011	319 aa	Known RBP	4.82	□□□□□ -1.64
RKM4	YDR257C	SEC28	P40509	296 aa	Known RBP	4.82	□□□□□ -1.64
RKM4	YDR257C	YDL186W	P48568	277 aa		4.82	□□□□□ -1.64
RKM4	YDR257C	GIP3	Q03016	1276 aa		4.82	□□□□□ -1.64
RKM4	YDR257C	YPL199C	Q08954	240 aa		4.82	□□□□□ -1.64
RKM4	YDR257C	YLL056C	Q12177	298 aa		4.82	□□□□□ -1.64
RKM4	YDR257C	ADE4	P04046	510 aa	Known RBP	4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 22.5 ms