RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C PUP3P25451 205 aaKnown RBP1.48□□□□□ -2.17
VPS54YDR027C MSN2P33748 704 aa1.48□□□□□ -2.17
VPS54YDR027C YBL055CP34220 418 aaPredicted RBP1.48□□□□□ -2.17
VPS54YDR027C SEF1P34228 1148 aa1.48□□□□□ -2.17
VPS54YDR027C ARP1P38696 384 aa1.48□□□□□ -2.17
VPS54YDR027C UBA4P38820 440 aa1.48□□□□□ -2.17
VPS54YDR027C ANS1P38832 159 aa1.48□□□□□ -2.17
VPS54YDR027C YGR066CP53242 292 aa1.48□□□□□ -2.17
VPS54YDR027C MSC1Q03104 513 aa1.48□□□□□ -2.17
VPS54YDR027C YDR239CQ03780 787 aa1.48□□□□□ -2.17
VPS54YDR027C YDR131CQ03899 556 aa1.48□□□□□ -2.17
VPS54YDR027C VPS38Q05919 439 aa1.48□□□□□ -2.17
VPS54YDR027C TEN1Q07921 160 aa1.48□□□□□ -2.17
VPS54YDR027C THI20Q08224 551 aa1.48□□□□□ -2.17
VPS54YDR027C RIM20Q12033 661 aa1.48□□□□□ -2.17
VPS54YDR027C YCL021W-AQ96VH3 125 aa1.48□□□□□ -2.17
VPS54YDR027C YML133CQ03099 1374 aa1.48□□□□□ -2.17
VPS54YDR027C PDX1P16451 410 aa1.47□□□□□ -2.17
VPS54YDR027C IMG1P25626 169 aa1.47□□□□□ -2.17
VPS54YDR027C SSE2P32590 693 aaKnown RBP1.47□□□□□ -2.17
VPS54YDR027C WBP1P33767 430 aaKnown RBP1.47□□□□□ -2.17
VPS54YDR027C NUP133P36161 1157 aa1.47□□□□□ -2.17
VPS54YDR027C ROT2P38138 954 aa1.47□□□□□ -2.17
VPS54YDR027C RPS10BP46784 105 aaKnown RBP1.47□□□□□ -2.17
VPS54YDR027C SDT1P53078 280 aa1.47□□□□□ -2.17
VPS54YDR027C YGL039WP53183 348 aaKnown RBP1.47□□□□□ -2.17
VPS54YDR027C COQ9Q05779 260 aa1.47□□□□□ -2.17
VPS54YDR027C YLR345WQ06137 509 aa1.47□□□□□ -2.17
VPS54YDR027C ATG29Q12092 213 aa1.47□□□□□ -2.17
VPS54YDR027C LEU9Q12166 604 aaKnown RBP1.47□□□□□ -2.17
VPS54YDR027C CAR1P00812 333 aaKnown RBP1.47□□□□□ -2.17
VPS54YDR027C HEM2P05373 342 aa1.47□□□□□ -2.17
VPS54YDR027C PMR1P13586 950 aa1.47□□□□□ -2.17
VPS54YDR027C PRD1P25375 712 aa1.47□□□□□ -2.17
VPS54YDR027C PMT1P33775 817 aa1.47□□□□□ -2.17
VPS54YDR027C YBR144CP34215 104 aa1.47□□□□□ -2.17
VPS54YDR027C STB6P36085 766 aa1.47□□□□□ -2.17
VPS54YDR027C TUL1P36096 758 aa1.47□□□□□ -2.17
VPS54YDR027C VID24P38263 362 aa1.47□□□□□ -2.17
VPS54YDR027C TSC10P38342 320 aa1.47□□□□□ -2.17
VPS54YDR027C LAG1P38703 411 aa1.47□□□□□ -2.17
VPS54YDR027C ALG5P40350 334 aa1.47□□□□□ -2.17
VPS54YDR027C AIM22P47051 409 aa1.47□□□□□ -2.17
VPS54YDR027C YMR160WQ03823 816 aa1.47□□□□□ -2.17
VPS54YDR027C EMI2Q04409 500 aaKnown RBP1.47□□□□□ -2.17
VPS54YDR027C DIC1Q06143 298 aa1.47□□□□□ -2.17
VPS54YDR027C AVL9Q12500 764 aa1.47□□□□□ -2.17
VPS54YDR027C UBR2Q07963 1872 aa1.46□□□□□ -2.17
VPS54YDR027C TRA1P38811 3744 aa1.46□□□□□ -2.18
VPS54YDR027C MRE11P32829 692 aa1.46□□□□□ -2.18
VPS54YDR027C SRP72P38688 640 aaKnown RBP1.46□□□□□ -2.18
VPS54YDR027C DBP8P38719 431 aa1.46□□□□□ -2.18
VPS54YDR027C KEL1P38853 1164 aaKnown RBP1.46□□□□□ -2.18
VPS54YDR027C BTN2P53286 410 aa1.46□□□□□ -2.18
VPS54YDR027C BNI5P53890 448 aaKnown RBP1.46□□□□□ -2.18
VPS54YDR027C KTR5P53966 522 aaPredicted RBP1.46□□□□□ -2.18
VPS54YDR027C RPA49Q01080 415 aaPredicted RBP1.46□□□□□ -2.18
VPS54YDR027C RSM23Q01163 450 aa1.46□□□□□ -2.18
VPS54YDR027C ARX1Q03862 593 aaKnown RBP1.46□□□□□ -2.18
VPS54YDR027C YMR087WQ04299 284 aa1.46□□□□□ -2.18
VPS54YDR027C AIM32Q04689 311 aa1.46□□□□□ -2.18
VPS54YDR027C RBS1Q05672 457 aaKnown RBP1.46□□□□□ -2.18
VPS54YDR027C SFI1Q12369 946 aa1.46□□□□□ -2.18
VPS54YDR027C ISN1Q99312 450 aa1.46□□□□□ -2.18
VPS54YDR027C RPO41P13433 1351 aaKnown RBP1.46□□□□□ -2.18
VPS54YDR027C RPL3P14126 387 aaKnown RBP1.46□□□□□ -2.18
VPS54YDR027C APE1P14904 514 aa1.46□□□□□ -2.18
VPS54YDR027C ART10P18634 518 aaKnown RBP1.46□□□□□ -2.18
VPS54YDR027C BOS1P25385 244 aa1.46□□□□□ -2.18
VPS54YDR027C ADK2P26364 225 aa1.46□□□□□ -2.18
VPS54YDR027C PMU1P36069 295 aa1.46□□□□□ -2.18
VPS54YDR027C HXT14P42833 540 aa1.46□□□□□ -2.18
VPS54YDR027C FAR3P46671 204 aa1.46□□□□□ -2.18
VPS54YDR027C CAF130P53280 1122 aaPredicted RBP1.46□□□□□ -2.18
VPS54YDR027C ACC1Q00955 2233 aaKnown RBP1.46□□□□□ -2.18
VPS54YDR027C RMT2Q03305 412 aa1.46□□□□□ -2.18
VPS54YDR027C ERB1Q04660 807 aaKnown RBP1.46□□□□□ -2.18
VPS54YDR027C GLO2Q05584 274 aa1.46□□□□□ -2.18
VPS54YDR027C TMC1Q08422 150 aaPredicted RBP1.46□□□□□ -2.18
VPS54YDR027C HNT3Q08702 217 aa1.46□□□□□ -2.18
VPS54YDR027C AUS1Q08409 1394 aa1.45□□□□□ -2.18
VPS54YDR027C ARG81P05085 880 aa1.45□□□□□ -2.18
VPS54YDR027C ATR1P13090 542 aa1.45□□□□□ -2.18
VPS54YDR027C SGV1P23293 657 aaKnown RBP1.45□□□□□ -2.18
VPS54YDR027C CLB3P24870 427 aa1.45□□□□□ -2.18
VPS54YDR027C DEG1P31115 442 aaKnown RBP1.45□□□□□ -2.18
VPS54YDR027C RPL32P38061 130 aaKnown RBP1.45□□□□□ -2.18
VPS54YDR027C THI2P38141 450 aa1.45□□□□□ -2.18
VPS54YDR027C PTR3P43606 678 aa1.45□□□□□ -2.18
VPS54YDR027C ERG26P53199 349 aaKnown RBP1.45□□□□□ -2.18
VPS54YDR027C WSC2P53832 503 aa1.45□□□□□ -2.18
VPS54YDR027C PDS5Q04264 1277 aa1.45□□□□□ -2.18
VPS54YDR027C SMC6Q12749 1114 aa1.45□□□□□ -2.18
VPS54YDR027C SIR4P11978 1358 aa1.45□□□□□ -2.18
VPS54YDR027C RAV1P47104 1357 aa1.45□□□□□ -2.18
VPS54YDR027C PUT2P07275 575 aa1.45□□□□□ -2.18
VPS54YDR027C PPH22P23595 377 aa1.45□□□□□ -2.18
VPS54YDR027C BUD5P25300 642 aaPredicted RBP1.45□□□□□ -2.18
VPS54YDR027C DBF4P32325 704 aa1.45□□□□□ -2.18
VPS54YDR027C HXT3P32466 567 aaKnown RBP1.45□□□□□ -2.18
Retrieved 100 of 5,963 RNA–protein pairs in 68.5 ms