RNA–Protein interactions for RNA: YML112W

CTK3, Transcript of Gamma subunit of C-terminal domain kinase I, yeastyeast

Gene CTK3, Length 891 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CTK3YML112W MDG1P53885 366 aa2.45□□□□□ -2.02
CTK3YML112W IBD2P53892 351 aa2.45□□□□□ -2.02
CTK3YML112W SLG1P54867 378 aa2.45□□□□□ -2.02
CTK3YML112W ODC1Q03028 310 aa2.45□□□□□ -2.02
CTK3YML112W MRPL35Q06678 367 aa2.45□□□□□ -2.02
CTK3YML112W TSR1Q07381 788 aaKnown RBP2.45□□□□□ -2.02
CTK3YML112W YPL199CQ08954 240 aa2.45□□□□□ -2.02
CTK3YML112W YDR056CQ12025 205 aa2.45□□□□□ -2.02
CTK3YML112W DFR1P07807 211 aaKnown RBP RIP-Chip data2.44□□□□□ -2.02not detected
CTK3YML112W RPL31BP0C2H9 113 aaKnown RBP2.44□□□□□ -2.02
CTK3YML112W AAC3P18238 307 aa2.44□□□□□ -2.02
CTK3YML112W MRE11P32829 692 aa2.44□□□□□ -2.02
CTK3YML112W REC114P32841 428 aa2.44□□□□□ -2.02
CTK3YML112W VID27P40157 782 aa2.44□□□□□ -2.02
CTK3YML112W YMR147WP40218 223 aaKnown RBP2.44□□□□□ -2.02
CTK3YML112W TIS11P47977 285 aa2.44□□□□□ -2.02
CTK3YML112W UPF3P48412 387 aaKnown RBP2.44□□□□□ -2.02
CTK3YML112W YLR152CP54072 576 aa2.44□□□□□ -2.02
CTK3YML112W PNG1Q02890 363 aa2.44□□□□□ -2.02
CTK3YML112W YLL032CQ07834 825 aaKnown RBP RIP-Chip data2.44□□□□□ -2.02not detected
CTK3YML112W FOB1O13329 566 aa2.43□□□□□ -2.02
CTK3YML112W YAR066WP0CX18 203 aa2.43□□□□□ -2.02
CTK3YML112W YHR214WP0CX19 203 aa2.43□□□□□ -2.02
CTK3YML112W SAM1P10659 382 aaKnown RBP2.43□□□□□ -2.02
CTK3YML112W SAM2P19358 384 aaKnown RBP2.43□□□□□ -2.02
CTK3YML112W OLE1P21147 510 aaKnown RBP2.43□□□□□ -2.02
CTK3YML112W PIM1P36775 1133 aa2.43□□□□□ -2.02
CTK3YML112W MIX23P38162 196 aa2.43□□□□□ -2.02
CTK3YML112W DOT5P40553 215 aa2.43□□□□□ -2.02
CTK3YML112W WWM1P43582 211 aaKnown RBP2.43□□□□□ -2.02
CTK3YML112W PET130P47065 347 aa2.43□□□□□ -2.02
CTK3YML112W OCA1P50946 238 aaPredicted RBP2.43□□□□□ -2.02
CTK3YML112W YDL007C-AQ2V2Q0 85 aa2.43□□□□□ -2.02
CTK3YML112W GCN4P03069 281 aa2.42□□□□□ -2.02
CTK3YML112W GFD2P25370 566 aaKnown RBP2.42□□□□□ -2.02
CTK3YML112W SPR1P32603 445 aa2.42□□□□□ -2.02
CTK3YML112W OST1P41543 476 aaKnown RBP2.42□□□□□ -2.02
CTK3YML112W TRS85P46944 698 aa2.42□□□□□ -2.02
CTK3YML112W SSN8P47821 323 aa2.42□□□□□ -2.02
CTK3YML112W VPS75P53853 264 aa2.42□□□□□ -2.02
CTK3YML112W RPT6Q01939 405 aaKnown RBP2.42□□□□□ -2.02
CTK3YML112W YDR239CQ03780 787 aa2.42□□□□□ -2.02
CTK3YML112W PDS5Q04264 1277 aa2.42□□□□□ -2.02
CTK3YML112W SOV1Q04748 898 aa2.42□□□□□ -2.02
CTK3YML112W MUM3Q08750 479 aa2.42□□□□□ -2.02
CTK3YML112W SEC39Q12745 709 aa2.42□□□□□ -2.02
CTK3YML112W YML133CQ03099 1374 aa2.41□□□□□ -2.02
CTK3YML112W YLL067CQ07888 1374 aa2.41□□□□□ -2.02
CTK3YML112W YLL066CQ99208 1374 aa2.41□□□□□ -2.02
CTK3YML112W OCA4P25366 362 aa2.41□□□□□ -2.02
CTK3YML112W CDC60P26637 1090 aaKnown RBP2.41□□□□□ -2.02
CTK3YML112W STB6P36085 766 aa2.41□□□□□ -2.02
CTK3YML112W MET28P40573 187 aa2.41□□□□□ -2.02
CTK3YML112W YGL108CP53139 140 aa2.41□□□□□ -2.02
CTK3YML112W HRI1Q05905 244 aaKnown RBP2.41□□□□□ -2.02
CTK3YML112W RBD2Q12270 262 aa2.41□□□□□ -2.02
CTK3YML112W SOD1P00445 154 aaKnown RBP2.4□□□□□ -2.03
CTK3YML112W PET123P17558 318 aa2.4□□□□□ -2.03
CTK3YML112W RVS161P25343 265 aaKnown RBP2.4□□□□□ -2.03
CTK3YML112W SPS22P25380 463 aa2.4□□□□□ -2.03
CTK3YML112W PRS1P32895 427 aaKnown RBP2.4□□□□□ -2.03
CTK3YML112W THI2P38141 450 aa2.4□□□□□ -2.03
CTK3YML112W RIB5P38145 238 aa2.4□□□□□ -2.03
CTK3YML112W CST26P38226 397 aa2.4□□□□□ -2.03
CTK3YML112W TWF1P53250 332 aa2.4□□□□□ -2.03
CTK3YML112W RRD2Q12461 358 aa2.4□□□□□ -2.03
CTK3YML112W ATP10P18496 279 aa2.39□□□□□ -2.03
CTK3YML112W DAL2P25335 343 aa2.39□□□□□ -2.03
CTK3YML112W GYP6P32806 458 aa2.39□□□□□ -2.03
CTK3YML112W YCR041WP37265 110 aa2.39□□□□□ -2.03
CTK3YML112W MST28P39552 234 aa2.39□□□□□ -2.03
CTK3YML112W YEL057CP39983 233 aa2.39□□□□□ -2.03
CTK3YML112W PAN6P40459 309 aa2.39□□□□□ -2.03
CTK3YML112W PRM5P40476 318 aa2.39□□□□□ -2.03
CTK3YML112W NCA3P46955 337 aa2.39□□□□□ -2.03
CTK3YML112W ARE2P53629 642 aaKnown RBP2.39□□□□□ -2.03
CTK3YML112W NCS2P53923 493 aaPredicted RBP2.39□□□□□ -2.03
CTK3YML112W MRP51Q02950 344 aa2.39□□□□□ -2.03
CTK3YML112W TAP42Q04372 366 aa2.39□□□□□ -2.03
CTK3YML112W RAD61Q99359 647 aa2.39□□□□□ -2.03
CTK3YML112W RHO2P06781 192 aa2.38□□□□□ -2.03
CTK3YML112W NAT1P12945 854 aaKnown RBP2.38□□□□□ -2.03
CTK3YML112W AFG1P32317 509 aa2.38□□□□□ -2.03
CTK3YML112W MNS1P32906 549 aa2.38□□□□□ -2.03
CTK3YML112W YBR225WP38321 900 aa2.38□□□□□ -2.03
CTK3YML112W LAM5P43560 674 aa2.38□□□□□ -2.03
CTK3YML112W YIP1P53039 248 aa2.38□□□□□ -2.03
CTK3YML112W RMD9P53140 646 aaKnown RBP2.38□□□□□ -2.03
CTK3YML112W PCP1P53259 346 aa2.38□□□□□ -2.03
CTK3YML112W SHY1P53266 389 aa2.38□□□□□ -2.03
CTK3YML112W DSL1P53847 754 aa2.38□□□□□ -2.03
CTK3YML112W HXT11P54862 567 aa2.38□□□□□ -2.03
CTK3YML112W HER2Q03557 464 aa2.38□□□□□ -2.03
CTK3YML112W YMR027WQ04371 470 aa2.38□□□□□ -2.03
CTK3YML112W WTM1Q12363 437 aaKnown RBP2.38□□□□□ -2.03
CTK3YML112W TIP1P27654 210 aaPredicted RBP2.37□□□□□ -2.03
CTK3YML112W RAD14P28519 371 aa2.37□□□□□ -2.03
CTK3YML112W PMT1P33775 817 aa2.37□□□□□ -2.03
CTK3YML112W CMC1P36064 111 aa2.37□□□□□ -2.03
CTK3YML112W YGR149WP48236 432 aa2.37□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 18.2 ms