RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSL1	YLR005W	HOP1	P20050	605 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	CLB1	P24868	471 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	SRB4	P32569	687 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	HIS7	P33734	552 aa	Known RBP	3.75	□□□□□ -1.81
SSL1	YLR005W	TIP20	P33891	701 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	TOM20	P35180	183 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	SMF2	P38778	549 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	SCC4	P40090	624 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	YMR134W	P40207	237 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	MEP1	P40260	492 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	SHR5	P41912	237 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	TY4A-J	P47023	414 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	ALF1	P53904	254 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	LGE1	Q02796	332 aa	Known RBP	3.75	□□□□□ -1.81
SSL1	YLR005W	TRM12	Q04235	462 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	FMP45	Q07651	309 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	IMA2	Q08295	589 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	TMS1	Q12116	473 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	FAS1	P07149	2051 aa	Known RBP	3.74	□□□□□ -1.81
SSL1	YLR005W	ILS1	P09436	1072 aa	Known RBP	3.74	□□□□□ -1.81
SSL1	YLR005W	CDC26	P14724	124 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	URA4	P20051	364 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	PRP2	P20095	876 aa	Predicted RBP	3.74	□□□□□ -1.81
SSL1	YLR005W	CKI1	P20485	582 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	RAD57	P25301	460 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	BUB3	P26449	341 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	MRPL9	P31334	269 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	SIN4	P32259	974 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	NIP1	P32497	812 aa	Known RBP	3.74	□□□□□ -1.81
SSL1	YLR005W	SRB5	P32585	307 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	SFC1	P33303	322 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	MPE1	P35728	441 aa	Known RBP	3.74	□□□□□ -1.81
SSL1	YLR005W	UBA4	P38820	440 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	YIL086C	P40503	102 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	RPC17	P47076	161 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	TAH11	P47112	604 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	MTR3	P48240	250 aa	Predicted RBP	3.74	□□□□□ -1.81
SSL1	YLR005W	PAN2	P53010	1115 aa	Predicted RBP	3.74	□□□□□ -1.81
SSL1	YLR005W	COS12	P53053	380 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	TFB2	Q02939	513 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	MTG1	Q03151	367 aa	Predicted RBP	3.74	□□□□□ -1.81
SSL1	YLR005W	MTQ2	Q03920	221 aa	Predicted RBP	3.74	□□□□□ -1.81
SSL1	YLR005W	NHX1	Q04121	633 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	YDR278C	Q05612	105 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	REH1	Q06709	432 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	YOL107W	Q12239	342 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	YBR182C-A	Q8TGU6	64 aa		3.74	□□□□□ -1.81
SSL1	YLR005W	BRR1	Q99177	341 aa	Predicted RBP	3.74	□□□□□ -1.81
SSL1	YLR005W	PNO1	Q99216	274 aa	Known RBP	3.74	□□□□□ -1.81
SSL1	YLR005W	GAL7	P08431	366 aa		3.73	□□□□□ -1.81
SSL1	YLR005W	RSR1	P13856	272 aa		3.73	□□□□□ -1.81
SSL1	YLR005W	TYR1	P20049	452 aa		3.73	□□□□□ -1.81
SSL1	YLR005W	YCL068C	P25593	260 aa		3.73	□□□□□ -1.81
SSL1	YLR005W	EBP2	P36049	427 aa	Known RBP	3.73	□□□□□ -1.81
SSL1	YLR005W	FMP46	P36141	133 aa	Known RBP	3.73	□□□□□ -1.81
SSL1	YLR005W	MMS21	P38632	267 aa		3.73	□□□□□ -1.81
SSL1	YLR005W	SEO1	P39709	593 aa		3.73	□□□□□ -1.81
SSL1	YLR005W	MGS1	P40151	587 aa		3.73	□□□□□ -1.81
SSL1	YLR005W	SEC24	P40482	926 aa	Known RBP	3.73	□□□□□ -1.81
SSL1	YLR005W	EFM4	P40516	257 aa		3.73	□□□□□ -1.81
SSL1	YLR005W	RLP7	P40693	322 aa	Known RBP	3.73	□□□□□ -1.81
SSL1	YLR005W	ALY2	P47029	1046 aa		3.73	□□□□□ -1.81
SSL1	YLR005W	IKS1	P47042	667 aa		3.73	□□□□□ -1.81
SSL1	YLR005W	HSV2	P50079	448 aa	Predicted RBP	3.73	□□□□□ -1.81
SSL1	YLR005W	YGL260W	P53056	76 aa		3.73	□□□□□ -1.81
SSL1	YLR005W	DIG1	Q03063	452 aa	Known RBP	3.73	□□□□□ -1.81
SSL1	YLR005W	NTG2	Q08214	380 aa		3.73	□□□□□ -1.81
SSL1	YLR005W	YBR056W-A	I2HB52	66 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	DIF1	O13577	133 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	YPT1	P01123	206 aa	Known RBP	3.72	□□□□□ -1.81
SSL1	YLR005W	RPL7A	P05737	244 aa	Known RBP	3.72	□□□□□ -1.81
SSL1	YLR005W	YAR066W	P0CX18	203 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	YHR214W	P0CX19	203 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	CDC24	P11433	854 aa	Predicted RBP	3.72	□□□□□ -1.81
SSL1	YLR005W	ARG1	P22768	420 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	GID7	P25569	745 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	TPS2	P31688	896 aa	Known RBP	3.72	□□□□□ -1.81
SSL1	YLR005W	MGM101	P32787	269 aa	Known RBP	3.72	□□□□□ -1.81
SSL1	YLR005W	SPC29	P33419	253 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	CTP1	P38152	299 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	FTH1	P38310	465 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	POP4	P38336	279 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	YHR112C	P38716	378 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	UTP18	P40362	594 aa	Predicted RBP	3.72	□□□□□ -1.81
SSL1	YLR005W	TRM9	P49957	279 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	ZIP2	P53061	704 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	RPL22B	P56628	122 aa	Known RBP	3.72	□□□□□ -1.81
SSL1	YLR005W	ECM9	Q02202	377 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	SPP2	Q02521	185 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	CTK1	Q03957	528 aa	Known RBP	3.72	□□□□□ -1.81
SSL1	YLR005W	TEN1	Q07921	160 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	APL4	Q12028	832 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	ATG29	Q12092	213 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	RPL7B	Q12213	244 aa	Known RBP	3.72	□□□□□ -1.81
SSL1	YLR005W	ZRT2	Q12436	422 aa		3.72	□□□□□ -1.81
SSL1	YLR005W	ERG20	P08524	352 aa	Known RBP	3.71	□□□□□ -1.82
SSL1	YLR005W	KAR1	P11927	433 aa		3.71	□□□□□ -1.82
SSL1	YLR005W	AMD1	P15274	810 aa	Known RBP	3.71	□□□□□ -1.82
SSL1	YLR005W	MET8	P15807	274 aa		3.71	□□□□□ -1.82
SSL1	YLR005W	ATP12	P22135	325 aa		3.71	□□□□□ -1.82

Retrieved 100 of 5,963 RNA–protein pairs in 27.4 ms