RNA–Protein interactions for RNA: YDR007W

TRP1, Transcript of Phosphoribosylanthranilate isomerase, yeast

Gene TRP1, Length 675 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRP1	YDR007W	YDR341C	Q05506	607 aa	Known RBP	5.8	□□□□□ -1.48
TRP1	YDR007W	DON1	Q05610	365 aa		5.8	□□□□□ -1.48
TRP1	YDR007W	NKP2	Q06162	153 aa		5.8	□□□□□ -1.48
TRP1	YDR007W	FRE3	Q08905	711 aa		5.8	□□□□□ -1.48
TRP1	YDR007W	SEC7	P11075	2009 aa	Known RBP	5.8	□□□□□ -1.48
TRP1	YDR007W	PDR18	P53756	1333 aa		5.79	□□□□□ -1.48
TRP1	YDR007W	GCD2	P12754	651 aa	Predicted RBP	5.79	□□□□□ -1.48
TRP1	YDR007W	NUP1	P20676	1076 aa		5.79	□□□□□ -1.48
TRP1	YDR007W	HIR2	P32480	875 aa		5.79	□□□□□ -1.48
TRP1	YDR007W	TUL1	P36096	758 aa		5.79	□□□□□ -1.48
TRP1	YDR007W	CAJ1	P39101	391 aa		5.79	□□□□□ -1.48
TRP1	YDR007W	YIL001W	P40560	513 aa		5.79	□□□□□ -1.48
TRP1	YDR007W	YGR016W	P53209	190 aa		5.79	□□□□□ -1.48
TRP1	YDR007W	ATP23	P53722	227 aa		5.79	□□□□□ -1.48
TRP1	YDR007W	NCS2	P53923	493 aa	Predicted RBP	5.79	□□□□□ -1.48
TRP1	YDR007W	HOT1	Q03213	719 aa		5.79	□□□□□ -1.48
TRP1	YDR007W	ADE13	Q05911	482 aa	Known RBP	5.79	□□□□□ -1.48
TRP1	YDR007W	RRP9	Q06506	573 aa	Known RBP	5.79	□□□□□ -1.48
TRP1	YDR007W	GPM3	Q12326	303 aa		5.79	□□□□□ -1.48
TRP1	YDR007W	IES3	Q12345	250 aa		5.79	□□□□□ -1.48
TRP1	YDR007W	TYR1	P20049	452 aa		5.78	□□□□□ -1.48
TRP1	YDR007W	FAR1	P21268	830 aa		5.78	□□□□□ -1.48
TRP1	YDR007W	PPZ2	P33329	710 aa		5.78	□□□□□ -1.48
TRP1	YDR007W	SRL3	P36167	246 aa		5.78	□□□□□ -1.48
TRP1	YDR007W	HSM3	P38348	480 aa		5.78	□□□□□ -1.48
TRP1	YDR007W	SEC28	P40509	296 aa	Known RBP	5.78	□□□□□ -1.48
TRP1	YDR007W	ALK1	P43633	760 aa	Known RBP	5.78	□□□□□ -1.48
TRP1	YDR007W	NET1	P47035	1189 aa		5.78	□□□□□ -1.48
TRP1	YDR007W	LSC1	P53598	329 aa	Known RBP	5.78	□□□□□ -1.48
TRP1	YDR007W	TIM11	P81449	96 aa	Predicted RBP	5.78	□□□□□ -1.48
TRP1	YDR007W	SEC5	P89102	971 aa		5.78	□□□□□ -1.48
TRP1	YDR007W	PEX25	Q02969	394 aa		5.78	□□□□□ -1.48
TRP1	YDR007W	TAP42	Q04372	366 aa		5.78	□□□□□ -1.48
TRP1	YDR007W	YDL057W	Q07379	328 aa		5.78	□□□□□ -1.48
TRP1	YDR007W	CTF3	Q12748	733 aa		5.78	□□□□□ -1.48
TRP1	YDR007W	YOR093C	Q12275	1648 aa		5.77	□□□□□ -1.48
TRP1	YDR007W	SNF3	P10870	884 aa		5.77	□□□□□ -1.49
TRP1	YDR007W	PRP2	P20095	876 aa	Predicted RBP	5.77	□□□□□ -1.49
TRP1	YDR007W	URE2	P23202	354 aa	Known RBP	5.77	□□□□□ -1.49
TRP1	YDR007W	IDH2	P28241	369 aa	Known RBP	5.77	□□□□□ -1.49
TRP1	YDR007W	KDX1	P36005	433 aa		5.77	□□□□□ -1.49
TRP1	YDR007W	NTC20	P38302	140 aa	Predicted RBP	5.77	□□□□□ -1.49
TRP1	YDR007W	ARP1	P38696	384 aa		5.77	□□□□□ -1.49
TRP1	YDR007W	UBA4	P38820	440 aa		5.77	□□□□□ -1.49
TRP1	YDR007W	VMA13	P41807	478 aa	Known RBP	5.77	□□□□□ -1.49
TRP1	YDR007W	TRS85	P46944	698 aa		5.77	□□□□□ -1.49
TRP1	YDR007W	AIM22	P47051	409 aa		5.77	□□□□□ -1.49
TRP1	YDR007W	ORM1	P53224	222 aa		5.77	□□□□□ -1.49
TRP1	YDR007W	DUG3	P53871	357 aa		5.77	□□□□□ -1.49
TRP1	YDR007W	YVH1	Q02256	364 aa	Known RBP	5.77	□□□□□ -1.49
TRP1	YDR007W	VTC3	Q02725	835 aa		5.77	□□□□□ -1.49
TRP1	YDR007W	YML108W	Q03759	105 aa		5.77	□□□□□ -1.49
TRP1	YDR007W	YMR160W	Q03823	816 aa		5.77	□□□□□ -1.49
TRP1	YDR007W	YMR111C	Q04461	462 aa	Predicted RBP	5.77	□□□□□ -1.49
TRP1	YDR007W	RRP45	Q05636	305 aa	Known RBP	5.77	□□□□□ -1.49
TRP1	YDR007W	MMR1	Q06324	491 aa		5.77	□□□□□ -1.49
TRP1	YDR007W	IRC3	Q06683	689 aa		5.77	□□□□□ -1.49
TRP1	YDR007W	PFA4	Q12006	378 aa		5.77	□□□□□ -1.49
TRP1	YDR007W	SPE3	Q12074	293 aa	Known RBP	5.77	□□□□□ -1.49
TRP1	YDR007W	CHC1	P22137	1653 aa	Known RBP	5.77	□□□□□ -1.49
TRP1	YDR007W	SRV2	P17555	526 aa	Known RBP	5.76	□□□□□ -1.49
TRP1	YDR007W	SNT1	P25357	1226 aa		5.76	□□□□□ -1.49
TRP1	YDR007W	ILV6	P25605	309 aa	Known RBP	5.76	□□□□□ -1.49
TRP1	YDR007W	RAD14	P28519	371 aa		5.76	□□□□□ -1.49
TRP1	YDR007W	MGM1	P32266	881 aa		5.76	□□□□□ -1.49
TRP1	YDR007W	ANP1	P32629	500 aa		5.76	□□□□□ -1.49
TRP1	YDR007W	NIP100	P33420	868 aa		5.76	□□□□□ -1.49
TRP1	YDR007W	SHP1	P34223	423 aa		5.76	□□□□□ -1.49
TRP1	YDR007W	ECM4	P36156	370 aa		5.76	□□□□□ -1.49
TRP1	YDR007W	STV1	P37296	890 aa		5.76	□□□□□ -1.49
TRP1	YDR007W	ROT2	P38138	954 aa		5.76	□□□□□ -1.49
TRP1	YDR007W	RRT2	P38332	387 aa		5.76	□□□□□ -1.49
TRP1	YDR007W	YIL060W	P40519	144 aa		5.76	□□□□□ -1.49
TRP1	YDR007W	ATG27	P46989	271 aa		5.76	□□□□□ -1.49
TRP1	YDR007W	FMS1	P50264	508 aa		5.76	□□□□□ -1.49
TRP1	YDR007W	ATP22	P50273	684 aa	Predicted RBP	5.76	□□□□□ -1.49
TRP1	YDR007W	SHE10	P53075	577 aa		5.76	□□□□□ -1.49
TRP1	YDR007W	YGL138C	P53122	345 aa		5.76	□□□□□ -1.49
TRP1	YDR007W	SPS4	P09937	338 aa		5.75	□□□□□ -1.49
TRP1	YDR007W	RPB8	P20436	146 aa		5.75	□□□□□ -1.49
TRP1	YDR007W	RRP7	P25368	297 aa	Predicted RBP	5.75	□□□□□ -1.49
TRP1	YDR007W	SPB1	P25582	841 aa	Predicted RBP	5.75	□□□□□ -1.49
TRP1	YDR007W	RPC19	P28000	142 aa	Known RBP	5.75	□□□□□ -1.49
TRP1	YDR007W	MBB1	P39534	108 aa		5.75	□□□□□ -1.49
TRP1	YDR007W	SYG1	P40528	902 aa		5.75	□□□□□ -1.49
TRP1	YDR007W	SNG1	P46950	547 aa		5.75	□□□□□ -1.49
TRP1	YDR007W	URB2	P47108	1174 aa		5.75	□□□□□ -1.49
TRP1	YDR007W	YGR149W	P48236	432 aa		5.75	□□□□□ -1.49
TRP1	YDR007W	PYK2	P52489	506 aa	Known RBP	5.75	□□□□□ -1.49
TRP1	YDR007W	CUL3	P53202	744 aa		5.75	□□□□□ -1.49
TRP1	YDR007W	YGR111W	P53265	400 aa		5.75	□□□□□ -1.49
TRP1	YDR007W	YNL144C	P53907	740 aa		5.75	□□□□□ -1.49
TRP1	YDR007W	BET4	Q00618	327 aa		5.75	□□□□□ -1.49
TRP1	YDR007W	ARP10	Q04549	284 aa		5.75	□□□□□ -1.49
TRP1	YDR007W	SIL1	Q08199	421 aa		5.75	□□□□□ -1.49
TRP1	YDR007W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	5.75	□□□□□ -1.49	not detected
TRP1	YDR007W	APC2	Q12440	853 aa		5.75	□□□□□ -1.49
TRP1	YDR007W	RRP5	Q05022	1729 aa	Known RBP	5.74	□□□□□ -1.49
TRP1	YDR007W	JIP3	O13555	125 aa		5.74	□□□□□ -1.49
TRP1	YDR007W	CBP1	P07252	654 aa		5.74	□□□□□ -1.49

Retrieved 100 of 5,963 RNA–protein pairs in 19.6 ms