RNA–Protein interactions for RNA: YLR399C

BDF1, Transcript of Protein involved in transcription initiation, yeast

Gene BDF1, Length 2,061 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BDF1	YLR399C	YDR131C	Q03899	556 aa		12.01	□□□□□ -0.49
BDF1	YLR399C	EMI2	Q04409	500 aa	Known RBP	12.01	□□□□□ -0.49
BDF1	YLR399C	UAF30	Q08747	228 aa		12.01	□□□□□ -0.49
BDF1	YLR399C	HAL9	Q12180	1030 aa		12.01	□□□□□ -0.49
BDF1	YLR399C	JLP1	Q12358	412 aa		12.01	□□□□□ -0.49
BDF1	YLR399C	SNU23	Q12368	194 aa	Predicted RBP	12.01	□□□□□ -0.49
BDF1	YLR399C	SEC53	P07283	254 aa	Known RBP	12.01	□□□□□ -0.49
BDF1	YLR399C	DUN1	P39009	513 aa		12.01	□□□□□ -0.49
BDF1	YLR399C	MNN1	P39106	762 aa		12.01	□□□□□ -0.49
BDF1	YLR399C	MTR3	P48240	250 aa	Predicted RBP	12.01	□□□□□ -0.49
BDF1	YLR399C	SCW11	P53189	542 aa		12.01	□□□□□ -0.49
BDF1	YLR399C	EFM5	P53200	248 aa	Known RBP	12.01	□□□□□ -0.49
BDF1	YLR399C	YML131W	Q03102	365 aa		12.01	□□□□□ -0.49
BDF1	YLR399C	SCS7	Q03529	384 aa		12.01	□□□□□ -0.49
BDF1	YLR399C	EFR3	Q03653	782 aa	Known RBP	12.01	□□□□□ -0.49
BDF1	YLR399C	ECM7	Q06200	448 aa		12.01	□□□□□ -0.49
BDF1	YLR399C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	12.01	□□□□□ -0.49	not detected
BDF1	YLR399C	HEM2	P05373	342 aa		12	□□□□□ -0.49
BDF1	YLR399C	GRR1	P24814	1151 aa		12	□□□□□ -0.49
BDF1	YLR399C	COX13	P32799	129 aa		12	□□□□□ -0.49
BDF1	YLR399C	SEC61	P32915	480 aa		12	□□□□□ -0.49
BDF1	YLR399C	MRPL7	P36519	292 aa		12	□□□□□ -0.49
BDF1	YLR399C	AGP2	P38090	596 aa		12	□□□□□ -0.49
BDF1	YLR399C	NUP85	P46673	744 aa		12	□□□□□ -0.49
BDF1	YLR399C	FMP48	P53233	369 aa		12	□□□□□ -0.49
BDF1	YLR399C	IBD2	P53892	351 aa		12	□□□□□ -0.49
BDF1	YLR399C	TRS31	Q03337	283 aa		12	□□□□□ -0.49
BDF1	YLR399C	YMR010W	Q03687	405 aa		12	□□□□□ -0.49
BDF1	YLR399C	MFB1	Q04922	465 aa		12	□□□□□ -0.49
BDF1	YLR399C	MCD1	Q12158	566 aa		12	□□□□□ -0.49
BDF1	YLR399C	RPS9A	O13516	197 aa	Known RBP	11.99	□□□□□ -0.49
BDF1	YLR399C	ALG7	P07286	448 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	MRP2	P10663	115 aa	Predicted RBP	11.99	□□□□□ -0.49
BDF1	YLR399C	APE1	P14904	514 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	MUP3	P38734	546 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	ERV46	P39727	415 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	EXO1	P39875	702 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	ISM1	P48526	1002 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	RSC58	Q07979	502 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	GPB1	Q08886	897 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	MDM12	Q92328	271 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	DSF1	P0CX08	502 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	YNR073C	P0CX09	502 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	HIS7	P33734	552 aa	Known RBP	11.99	□□□□□ -0.49
BDF1	YLR399C	LST4	P34239	828 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	TEF4	P36008	412 aa	Known RBP	11.99	□□□□□ -0.49
BDF1	YLR399C	CAF4	P36130	643 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	RIB1	P38066	345 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	RRP4	P38792	359 aa	Known RBP	11.99	□□□□□ -0.49
BDF1	YLR399C	PLB1	P39105	664 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	ACA1	P39970	489 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	PFD1	P46988	109 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	ACF4	P47129	309 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	YPT32	P51996	222 aa	Known RBP	11.99	□□□□□ -0.49
BDF1	YLR399C	RPL6A	Q02326	176 aa	Known RBP	11.99	□□□□□ -0.49
BDF1	YLR399C	CDD1	Q06549	142 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	YDL073W	Q07454	984 aa		11.99	□□□□□ -0.49
BDF1	YLR399C	DPH2	P32461	534 aa		11.98	□□□□□ -0.49
BDF1	YLR399C	UTR4	P32626	227 aa		11.98	□□□□□ -0.49
BDF1	YLR399C	KAP122	P32767	1081 aa		11.98	□□□□□ -0.49
BDF1	YLR399C	SKT5	P34226	696 aa		11.98	□□□□□ -0.49
BDF1	YLR399C	YAP1801	P38856	637 aa		11.98	□□□□□ -0.49
BDF1	YLR399C	HMF1	P40037	129 aa	Known RBP	11.98	□□□□□ -0.49
BDF1	YLR399C	SLG1	P54867	378 aa		11.98	□□□□□ -0.49
BDF1	YLR399C	ENV7	Q12003	364 aa		11.98	□□□□□ -0.49
BDF1	YLR399C	PNS1	Q12412	539 aa		11.98	□□□□□ -0.49
BDF1	YLR399C	RPB4	P20433	221 aa	Predicted RBP	11.98	□□□□□ -0.49
BDF1	YLR399C	KIN3	P22209	435 aa		11.98	□□□□□ -0.49
BDF1	YLR399C	LRE1	P25579	583 aa	Known RBP	11.98	□□□□□ -0.49
BDF1	YLR399C	ERG9	P29704	444 aa		11.98	□□□□□ -0.49
BDF1	YLR399C	MSS1	P32559	526 aa	Predicted RBP	11.98	□□□□□ -0.49
BDF1	YLR399C	APT2	P36973	181 aa		11.98	□□□□□ -0.49
BDF1	YLR399C	RPS10B	P46784	105 aa	Known RBP	11.98	□□□□□ -0.49
BDF1	YLR399C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	11.98	□□□□□ -0.49	not detected
BDF1	YLR399C	RPS10A	Q08745	105 aa	Predicted RBP	11.98	□□□□□ -0.49
BDF1	YLR399C	HPR1	P17629	752 aa	Known RBP	11.97	□□□□□ -0.49
BDF1	YLR399C	SLX5	P32828	619 aa	Known RBP	11.97	□□□□□ -0.49
BDF1	YLR399C	SFB3	P38810	929 aa		11.97	□□□□□ -0.49
BDF1	YLR399C	PRM8	P53174	237 aa		11.97	□□□□□ -0.49
BDF1	YLR399C	RLI1	Q03195	608 aa	Known RBP	11.97	□□□□□ -0.49
BDF1	YLR399C	YDR249C	Q03787	373 aa		11.97	□□□□□ -0.49
BDF1	YLR399C	HEL2	Q05580	639 aa	Known RBP	11.97	□□□□□ -0.49
BDF1	YLR399C	YDL121C	Q07541	149 aa		11.97	□□□□□ -0.49
BDF1	YLR399C	MAM3	Q12296	706 aa		11.97	□□□□□ -0.49
BDF1	YLR399C	DBP3	P20447	523 aa	Known RBP	11.96	□□□□□ -0.49
BDF1	YLR399C	RAM1	P22007	431 aa		11.96	□□□□□ -0.49
BDF1	YLR399C	YBR056W	P38081	501 aa		11.96	□□□□□ -0.49
BDF1	YLR399C	MRP21	P38175	177 aa		11.96	□□□□□ -0.49
BDF1	YLR399C	REG2	P38232	338 aa		11.96	□□□□□ -0.49
BDF1	YLR399C	DOT6	P40059	670 aa	Known RBP	11.96	□□□□□ -0.49
BDF1	YLR399C	APS3	P47064	194 aa		11.96	□□□□□ -0.49
BDF1	YLR399C	GND2	P53319	492 aa		11.96	□□□□□ -0.49
BDF1	YLR399C	KTR6	P54070	446 aa		11.96	□□□□□ -0.49
BDF1	YLR399C	SKY1	Q03656	742 aa		11.96	□□□□□ -0.49
BDF1	YLR399C	THP1	Q08231	455 aa		11.96	□□□□□ -0.49
BDF1	YLR399C	SYC1	Q08553	188 aa	Predicted RBP	11.96	□□□□□ -0.49
BDF1	YLR399C	YPL199C	Q08954	240 aa		11.96	□□□□□ -0.49
BDF1	YLR399C	GPM2	Q12008	311 aa		11.96	□□□□□ -0.49
BDF1	YLR399C	YHR213W-A	Q8TGT4	77 aa		11.96	□□□□□ -0.49
BDF1	YLR399C	RPS17A	P02407	136 aa	Known RBP	11.96	□□□□□ -0.5

Retrieved 100 of 5,963 RNA–protein pairs in 32.1 ms