RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C RBS1Q05672 457 aaKnown RBP1.94□□□□□ -2.1
RTR1YER139C VID22Q05934 901 aa1.94□□□□□ -2.1
RTR1YER139C RFM1Q12192 310 aa1.94□□□□□ -2.1
RTR1YER139C RKM5Q12367 367 aa1.94□□□□□ -2.1
RTR1YER139C RPS8AP0CX39 200 aaKnown RBP1.93□□□□□ -2.1
RTR1YER139C RPS8BP0CX40 200 aaKnown RBP1.93□□□□□ -2.1
RTR1YER139C KAP123P40069 1113 aaKnown RBP1.93□□□□□ -2.1
RTR1YER139C NCA3P46955 337 aa1.93□□□□□ -2.1
RTR1YER139C YPR091CQ06833 770 aa1.93□□□□□ -2.1
RTR1YER139C HSH49Q99181 213 aaPredicted RBP1.93□□□□□ -2.1
RTR1YER139C PEP4P07267 405 aaKnown RBP1.92□□□□□ -2.1
RTR1YER139C PRB1P09232 635 aa1.92□□□□□ -2.1
RTR1YER139C KKQ8P36004 724 aa1.92□□□□□ -2.1
RTR1YER139C RRN3P36070 627 aa1.92□□□□□ -2.1
RTR1YER139C STB6P36085 766 aa1.92□□□□□ -2.1
RTR1YER139C MIX23P38162 196 aa1.92□□□□□ -2.1
RTR1YER139C AXL2P38928 823 aa1.92□□□□□ -2.1
RTR1YER139C YER010CP40011 234 aa1.92□□□□□ -2.1
RTR1YER139C OST1P41543 476 aaKnown RBP1.92□□□□□ -2.1
RTR1YER139C FAR3P46671 204 aa1.92□□□□□ -2.1
RTR1YER139C APT1P49435 187 aaKnown RBP1.92□□□□□ -2.1
RTR1YER139C POP6P53218 158 aa1.92□□□□□ -2.1
RTR1YER139C CBK1P53894 756 aa1.92□□□□□ -2.1
RTR1YER139C YML131WQ03102 365 aa1.92□□□□□ -2.1
RTR1YER139C SNO4Q04902 237 aa1.92□□□□□ -2.1
RTR1YER139C HSP33Q08914 237 aaKnown RBP1.92□□□□□ -2.1
RTR1YER139C HSP32Q08992 237 aa1.92□□□□□ -2.1
RTR1YER139C GLK1P17709 500 aaKnown RBP1.91□□□□□ -2.1
RTR1YER139C CRM1P30822 1084 aaKnown RBP1.91□□□□□ -2.1
RTR1YER139C MRPL10P36520 322 aa1.91□□□□□ -2.1
RTR1YER139C CIN4P39110 191 aa1.91□□□□□ -2.1
RTR1YER139C HER2Q03557 464 aa1.91□□□□□ -2.1
RTR1YER139C RIX7Q07844 837 aaKnown RBP1.91□□□□□ -2.1
RTR1YER139C KEL3Q08979 651 aaPredicted RBP1.91□□□□□ -2.1
RTR1YER139C NBP2Q12163 236 aa1.91□□□□□ -2.1
RTR1YER139C YOL087CQ99247 1116 aa1.91□□□□□ -2.1
RTR1YER139C DPB3P27344 201 aa1.9□□□□□ -2.11
RTR1YER139C NUP2P32499 720 aa1.9□□□□□ -2.11
RTR1YER139C RSM22P36056 628 aa1.9□□□□□ -2.11
RTR1YER139C CHS6P40955 746 aa1.9□□□□□ -2.11
RTR1YER139C YJR085CP47131 105 aaKnown RBP1.9□□□□□ -2.11
RTR1YER139C AAD10P47182 288 aa1.9□□□□□ -2.11
RTR1YER139C BRO1P48582 844 aa1.9□□□□□ -2.11
RTR1YER139C LYS4P49367 693 aaPredicted RBP1.9□□□□□ -2.11
RTR1YER139C YMR018WQ04364 514 aa1.9□□□□□ -2.11
RTR1YER139C SSP2Q08646 371 aa1.9□□□□□ -2.11
RTR1YER139C FUM1P08417 488 aaKnown RBP1.89□□□□□ -2.11
RTR1YER139C PRE8P23639 250 aa1.89□□□□□ -2.11
RTR1YER139C MNS1P32906 549 aa1.89□□□□□ -2.11
RTR1YER139C DUG2P38149 878 aa1.89□□□□□ -2.11
RTR1YER139C YHR131CP38835 850 aa1.89□□□□□ -2.11
RTR1YER139C VIP1Q06685 1146 aaKnown RBP1.89□□□□□ -2.11
RTR1YER139C THP1Q08231 455 aa1.89□□□□□ -2.11
RTR1YER139C YPL199CQ08954 240 aa1.89□□□□□ -2.11
RTR1YER139C PRM7Q12459 698 aa1.89□□□□□ -2.11
RTR1YER139C SKM1Q12469 655 aa1.89□□□□□ -2.11
RTR1YER139C SSH4P32343 579 aa1.88□□□□□ -2.11
RTR1YER139C BNA4P38169 460 aa1.88□□□□□ -2.11
RTR1YER139C TCM62P38228 572 aaKnown RBP1.88□□□□□ -2.11
RTR1YER139C DPH1P40487 425 aaKnown RBP1.88□□□□□ -2.11
RTR1YER139C GAB1P41733 394 aa1.88□□□□□ -2.11
RTR1YER139C RAD30Q04049 632 aa1.88□□□□□ -2.11
RTR1YER139C CUE5Q08412 411 aaKnown RBP1.88□□□□□ -2.11
RTR1YER139C TCO89Q08921 799 aa1.88□□□□□ -2.11
RTR1YER139C YPQ1Q12010 308 aa1.88□□□□□ -2.11
RTR1YER139C MES1P00958 751 aaKnown RBP1.87□□□□□ -2.11
RTR1YER139C CDC24P11433 854 aaPredicted RBP1.87□□□□□ -2.11
RTR1YER139C BUB3P26449 341 aa1.87□□□□□ -2.11
RTR1YER139C CHK1P38147 527 aa1.87□□□□□ -2.11
RTR1YER139C MAL33P38157 468 aa1.87□□□□□ -2.11
RTR1YER139C LYS14P40971 790 aa1.87□□□□□ -2.11
RTR1YER139C SIP4P46954 829 aa1.87□□□□□ -2.11
RTR1YER139C MEP3P53390 489 aa1.87□□□□□ -2.11
RTR1YER139C OGG1P53397 376 aaPredicted RBP1.87□□□□□ -2.11
RTR1YER139C VHS1Q03785 461 aa1.87□□□□□ -2.11
RTR1YER139C ARD1P07347 238 aaPredicted RBP1.86□□□□□ -2.11
RTR1YER139C SAM1P10659 382 aaKnown RBP1.86□□□□□ -2.11
RTR1YER139C SAM2P19358 384 aaKnown RBP1.86□□□□□ -2.11
RTR1YER139C MCM10P32354 571 aa1.86□□□□□ -2.11
RTR1YER139C MFT1P33441 392 aaKnown RBP1.86□□□□□ -2.11
RTR1YER139C SHP1P34223 423 aa1.86□□□□□ -2.11
RTR1YER139C YBL029WP38201 376 aa1.86□□□□□ -2.11
RTR1YER139C SEO1P39709 593 aa1.86□□□□□ -2.11
RTR1YER139C AFG3P39925 761 aa1.86□□□□□ -2.11
RTR1YER139C VID27P40157 782 aa1.86□□□□□ -2.11
RTR1YER139C ARC1P46672 376 aaKnown RBP1.86□□□□□ -2.11
RTR1YER139C ECM11Q04110 302 aa1.86□□□□□ -2.11
RTR1YER139C YKU80Q04437 629 aa1.86□□□□□ -2.11
RTR1YER139C OPY2Q06810 360 aa1.86□□□□□ -2.11
RTR1YER139C NFT1P0CE68 1218 aa1.85□□□□□ -2.11
RTR1YER139C YCK1P23291 538 aa1.85□□□□□ -2.11
RTR1YER139C SPS22P25380 463 aa1.85□□□□□ -2.11
RTR1YER139C YBR144CP34215 104 aa1.85□□□□□ -2.11
RTR1YER139C MUD2P36084 527 aaKnown RBP1.85□□□□□ -2.11
RTR1YER139C AUR1P36107 401 aaPredicted RBP1.85□□□□□ -2.11
RTR1YER139C UTP18P40362 594 aaPredicted RBP1.85□□□□□ -2.11
RTR1YER139C LCL3P53153 274 aa1.85□□□□□ -2.11
RTR1YER139C CWC25P53854 179 aaKnown RBP1.85□□□□□ -2.11
RTR1YER139C YSA1Q01976 231 aa1.85□□□□□ -2.11
RTR1YER139C HUA2Q12134 243 aa1.85□□□□□ -2.11
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms