RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C YMR074CQ04773 145 aa6.78□□□□□ -1.32
NUP116YMR047C AVT3P36062 692 aa6.77□□□□□ -1.33
NUP116YMR047C SNF2P22082 1703 aa6.77□□□□□ -1.33
NUP116YMR047C YRF1-3P0CX14 1859 aa6.76□□□□□ -1.33
NUP116YMR047C YRF1-7P0CX15 1859 aa6.76□□□□□ -1.33
NUP116YMR047C YRF1-6P53819 1859 aa6.76□□□□□ -1.33
NUP116YMR047C PRP43P53131 767 aaKnown RBP6.76□□□□□ -1.33
NUP116YMR047C NOP7P53261 605 aaKnown RBP6.76□□□□□ -1.33
NUP116YMR047C CPS1P27614 576 aa6.75□□□□□ -1.33
NUP116YMR047C EBP2P36049 427 aaKnown RBP6.75□□□□□ -1.33
NUP116YMR047C APC1P53886 1748 aa6.74□□□□□ -1.33
NUP116YMR047C REB1P21538 810 aa6.73□□□□□ -1.33
NUP116YMR047C SIS2P36024 562 aa6.73□□□□□ -1.33
NUP116YMR047C ROM2P51862 1356 aaKnown RBP6.73□□□□□ -1.33
NUP116YMR047C CAB1Q04430 367 aa6.73□□□□□ -1.33
NUP116YMR047C YIL177CP40434 1758 aa6.71□□□□□ -1.33
NUP116YMR047C YJL225CP40889 1758 aa6.71□□□□□ -1.33
NUP116YMR047C GTT3P39996 337 aa6.71□□□□□ -1.34
NUP116YMR047C NOP2P40991 618 aaKnown RBP6.7□□□□□ -1.34
NUP116YMR047C IMH1Q06704 911 aaKnown RBP6.7□□□□□ -1.34
NUP116YMR047C RSF2P46974 1380 aa6.69□□□□□ -1.34
NUP116YMR047C CAB3P36076 571 aa6.69□□□□□ -1.34
NUP116YMR047C ENV9Q08651 330 aa6.69□□□□□ -1.34
NUP116YMR047C ENT1Q12518 454 aa6.69□□□□□ -1.34
NUP116YMR047C YLR419WQ06698 1435 aaKnown RBP6.68□□□□□ -1.34
NUP116YMR047C MLP1Q02455 1875 aaKnown RBP6.67□□□□□ -1.34
NUP116YMR047C PRI1P10363 409 aa6.67□□□□□ -1.34
NUP116YMR047C YEF3P16521 1044 aaKnown RBP6.67□□□□□ -1.34
NUP116YMR047C APP1P53933 587 aa6.65□□□□□ -1.35
NUP116YMR047C RIM15P43565 1770 aa6.65□□□□□ -1.35
NUP116YMR047C MTR4P47047 1073 aaKnown RBP6.63□□□□□ -1.35
NUP116YMR047C TAF8Q03750 510 aa6.63□□□□□ -1.35
NUP116YMR047C YFR016CP43597 1233 aaKnown RBP6.62□□□□□ -1.35
NUP116YMR047C SIR4P11978 1358 aa6.62□□□□□ -1.35
NUP116YMR047C PRP5P21372 849 aaPredicted RBP6.61□□□□□ -1.35
NUP116YMR047C UBP1P25037 809 aa6.6□□□□□ -1.35
NUP116YMR047C YML133CQ03099 1374 aa6.6□□□□□ -1.35
NUP116YMR047C YLL067CQ07888 1374 aa6.6□□□□□ -1.35
NUP116YMR047C YLL066CQ99208 1374 aa6.6□□□□□ -1.35
NUP116YMR047C PPH3P32345 308 aa6.6□□□□□ -1.35
NUP116YMR047C BUD31P25337 157 aaPredicted RBP6.59□□□□□ -1.35
NUP116YMR047C SPE2P21182 396 aa6.58□□□□□ -1.36
NUP116YMR047C RCM1P53972 490 aa6.58□□□□□ -1.36
NUP116YMR047C SLM3Q12093 417 aa6.58□□□□□ -1.36
NUP116YMR047C TAF5P38129 798 aa6.57□□□□□ -1.36
NUP116YMR047C LEU2P04173 364 aaPredicted RBP6.56□□□□□ -1.36
NUP116YMR047C TCB1Q12466 1186 aa6.56□□□□□ -1.36
NUP116YMR047C SPT7P35177 1332 aa6.56□□□□□ -1.36
NUP116YMR047C PRP45P28004 379 aaPredicted RBP6.56□□□□□ -1.36
NUP116YMR047C IES2P40154 320 aa6.56□□□□□ -1.36
NUP116YMR047C UTP10P42945 1769 aaKnown RBP6.53□□□□□ -1.36
NUP116YMR047C TAP42Q04372 366 aa6.52□□□□□ -1.37
NUP116YMR047C IOC4Q04213 475 aa6.52□□□□□ -1.37
NUP116YMR047C FKH1P40466 484 aa6.51□□□□□ -1.37
NUP116YMR047C MSB3P48566 633 aaPredicted RBP6.51□□□□□ -1.37
NUP116YMR047C DOT5P40553 215 aa6.5□□□□□ -1.37
NUP116YMR047C FOX2Q02207 900 aaKnown RBP6.5□□□□□ -1.37
NUP116YMR047C SEC3P33332 1336 aaKnown RBP6.5□□□□□ -1.37
NUP116YMR047C KIP3P53086 805 aaKnown RBP6.5□□□□□ -1.37
NUP116YMR047C GRX4P32642 244 aa6.49□□□□□ -1.37
NUP116YMR047C MEC3Q02574 474 aa6.48□□□□□ -1.37
NUP116YMR047C MHP1P43638 1398 aa6.48□□□□□ -1.37
NUP116YMR047C ALD2P47771 506 aa6.48□□□□□ -1.37
NUP116YMR047C TFA1P36100 482 aa6.48□□□□□ -1.37
NUP116YMR047C UGA2P38067 497 aa6.47□□□□□ -1.37
NUP116YMR047C YPR148CQ06523 435 aa6.47□□□□□ -1.37
NUP116YMR047C YKR075CP36155 307 aa6.47□□□□□ -1.37
NUP116YMR047C NPR2P39923 615 aa6.47□□□□□ -1.37
NUP116YMR047C PRP40P33203 583 aaKnown RBP6.47□□□□□ -1.37
NUP116YMR047C CTF4Q01454 927 aa6.46□□□□□ -1.38
NUP116YMR047C RTF1P53064 558 aa6.46□□□□□ -1.38
NUP116YMR047C LAM6Q08001 693 aa6.46□□□□□ -1.38
NUP116YMR047C AUS1Q08409 1394 aa6.46□□□□□ -1.38
NUP116YMR047C CHZ1P40019 153 aaPredicted RBP6.45□□□□□ -1.38
NUP116YMR047C RPO41P13433 1351 aaKnown RBP6.45□□□□□ -1.38
NUP116YMR047C PDI1P17967 522 aaKnown RBP6.45□□□□□ -1.38
NUP116YMR047C BDF1P35817 686 aa6.45□□□□□ -1.38
NUP116YMR047C CSE4P36012 229 aa6.45□□□□□ -1.38
NUP116YMR047C YBL086CP38177 466 aa6.45□□□□□ -1.38
NUP116YMR047C XKS1P42826 600 aa6.44□□□□□ -1.38
NUP116YMR047C RPN11P43588 306 aaKnown RBP6.43□□□□□ -1.38
NUP116YMR047C SSA2P10592 639 aaKnown RBP6.43□□□□□ -1.38
NUP116YMR047C NSR1P27476 414 aaKnown RBP RIP-Chip data6.43□□□□□ -1.38not detected
NUP116YMR047C LEU3P08638 886 aa6.43□□□□□ -1.38
NUP116YMR047C YKL133CP36066 463 aa6.42□□□□□ -1.38
NUP116YMR047C CTH1P47976 325 aa6.42□□□□□ -1.38
NUP116YMR047C CWC22P53333 577 aaKnown RBP6.42□□□□□ -1.38
NUP116YMR047C YRF1-4O13559 1382 aa6.42□□□□□ -1.38
NUP116YMR047C RPS24AP0CX31 135 aaKnown RBP6.42□□□□□ -1.38
NUP116YMR047C RPS24BP0CX32 135 aaKnown RBP6.42□□□□□ -1.38
NUP116YMR047C RAD4P14736 754 aa6.41□□□□□ -1.38
NUP116YMR047C SSA1P10591 642 aaKnown RBP6.41□□□□□ -1.38
NUP116YMR047C UTP22P53254 1237 aaPredicted RBP6.41□□□□□ -1.38
NUP116YMR047C KRI1P42846 591 aaKnown RBP6.4□□□□□ -1.38
NUP116YMR047C RPS9BP05755 195 aaKnown RBP6.39□□□□□ -1.39
NUP116YMR047C YJL181WP46987 611 aa6.39□□□□□ -1.39
NUP116YMR047C DIP2Q12220 943 aaPredicted RBP6.39□□□□□ -1.39
NUP116YMR047C LYS2P07702 1392 aa6.39□□□□□ -1.39
NUP116YMR047C GRX1P25373 110 aaKnown RBP6.39□□□□□ -1.39
NUP116YMR047C ENP1P38333 483 aaKnown RBP6.38□□□□□ -1.39
Retrieved 100 of 5,963 RNA–protein pairs in 40.4 ms