RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W YNR029CP53729 429 aaKnown RBP6.34□□□□□ -1.39
SSH4YKL124W RIA1P53893 1110 aa6.34□□□□□ -1.39
SSH4YKL124W YAH1Q12184 172 aaKnown RBP6.33□□□□□ -1.4
SSH4YKL124W HOP09932 586 aa6.32□□□□□ -1.4
SSH4YKL124W PTP3P40048 928 aa6.32□□□□□ -1.4
SSH4YKL124W ALD4P46367 519 aaKnown RBP6.3□□□□□ -1.4
SSH4YKL124W DCD1P06773 312 aa6.3□□□□□ -1.4
SSH4YKL124W RAD9P14737 1309 aa6.29□□□□□ -1.4
SSH4YKL124W NOP7P53261 605 aaKnown RBP6.28□□□□□ -1.4
SSH4YKL124W CAB1Q04430 367 aa6.28□□□□□ -1.4
SSH4YKL124W TFC8Q12308 588 aa6.27□□□□□ -1.41
SSH4YKL124W TY3B-IQ7LHG5 1498 aaKnown RBP6.26□□□□□ -1.41
SSH4YKL124W DMA1P38823 416 aa6.26□□□□□ -1.41
SSH4YKL124W YRF1-2P40105 1681 aa6.24□□□□□ -1.41
SSH4YKL124W NAP1P25293 417 aaKnown RBP6.24□□□□□ -1.41
SSH4YKL124W RIM101P33400 625 aa6.24□□□□□ -1.41
SSH4YKL124W LEO1P38439 464 aa6.24□□□□□ -1.41
SSH4YKL124W RRP5Q05022 1729 aaKnown RBP6.23□□□□□ -1.41
SSH4YKL124W MAP2P38174 421 aaKnown RBP6.23□□□□□ -1.41
SSH4YKL124W SIS1P25294 352 aaKnown RBP6.22□□□□□ -1.41
SSH4YKL124W ESL2P36168 1195 aa6.22□□□□□ -1.41
SSH4YKL124W YIL055CP40523 627 aaKnown RBP6.22□□□□□ -1.41
SSH4YKL124W GLN1P32288 370 aaKnown RBP6.22□□□□□ -1.41
SSH4YKL124W APP1P53933 587 aa6.22□□□□□ -1.41
SSH4YKL124W UBP10P53874 792 aaPredicted RBP6.2□□□□□ -1.42
SSH4YKL124W CPS1P27614 576 aa6.18□□□□□ -1.42
SSH4YKL124W TAF8Q03750 510 aa6.18□□□□□ -1.42
SSH4YKL124W TY4B-HP0C2J7 1802 aa6.18□□□□□ -1.42
SSH4YKL124W TY4B-JP47024 1803 aa6.18□□□□□ -1.42
SSH4YKL124W ENT1Q12518 454 aa6.17□□□□□ -1.42
SSH4YKL124W PSK1P31374 1356 aa6.16□□□□□ -1.42
SSH4YKL124W ADE6P38972 1358 aaKnown RBP6.16□□□□□ -1.42
SSH4YKL124W TAF5P38129 798 aa6.16□□□□□ -1.42
SSH4YKL124W YMR074CQ04773 145 aa6.16□□□□□ -1.42
SSH4YKL124W ENV9Q08651 330 aa6.16□□□□□ -1.42
SSH4YKL124W RCM1P53972 490 aa6.15□□□□□ -1.42
SSH4YKL124W IMH1Q06704 911 aaKnown RBP6.14□□□□□ -1.43
SSH4YKL124W SCY1P53009 804 aa6.13□□□□□ -1.43
SSH4YKL124W SPE2P21182 396 aa6.12□□□□□ -1.43
SSH4YKL124W PRP45P28004 379 aaPredicted RBP6.12□□□□□ -1.43
SSH4YKL124W PPH3P32345 308 aa6.12□□□□□ -1.43
SSH4YKL124W EDE1P34216 1381 aa6.11□□□□□ -1.43
SSH4YKL124W YLR419WQ06698 1435 aaKnown RBP6.1□□□□□ -1.43
SSH4YKL124W PRP5P21372 849 aaPredicted RBP6.1□□□□□ -1.43
SSH4YKL124W SCT1P32784 759 aa6.1□□□□□ -1.43
SSH4YKL124W KIP3P53086 805 aaKnown RBP6.09□□□□□ -1.43
SSH4YKL124W URB1P34241 1764 aaKnown RBP6.09□□□□□ -1.43
SSH4YKL124W BCH2P36122 765 aa6.08□□□□□ -1.44
SSH4YKL124W PRP43P53131 767 aaKnown RBP6.08□□□□□ -1.44
SSH4YKL124W RSF2P46974 1380 aa6.07□□□□□ -1.44
SSH4YKL124W MTR4P47047 1073 aaKnown RBP6.07□□□□□ -1.44
SSH4YKL124W ROM2P51862 1356 aaKnown RBP6.06□□□□□ -1.44
SSH4YKL124W MSB3P48566 633 aaPredicted RBP6.05□□□□□ -1.44
SSH4YKL124W FKS3Q04952 1785 aa6.05□□□□□ -1.44
SSH4YKL124W LEU2P04173 364 aaPredicted RBP6.05□□□□□ -1.44
SSH4YKL124W OXP1P28273 1286 aa6.04□□□□□ -1.44
SSH4YKL124W SLX5P32828 619 aaKnown RBP6.04□□□□□ -1.44
SSH4YKL124W YML133CQ03099 1374 aa6.04□□□□□ -1.44
SSH4YKL124W YLL067CQ07888 1374 aa6.04□□□□□ -1.44
SSH4YKL124W YLL066CQ99208 1374 aa6.04□□□□□ -1.44
SSH4YKL124W IES2P40154 320 aa6.03□□□□□ -1.44
SSH4YKL124W TCB1Q12466 1186 aa6.03□□□□□ -1.44
SSH4YKL124W APC1P53886 1748 aa6.03□□□□□ -1.44
SSH4YKL124W UBP1P25037 809 aa6.02□□□□□ -1.45
SSH4YKL124W CHZ1P40019 153 aaPredicted RBP6.02□□□□□ -1.45
SSH4YKL124W SLM3Q12093 417 aa6.02□□□□□ -1.45
SSH4YKL124W YRF1-3P0CX14 1859 aa6.02□□□□□ -1.45
SSH4YKL124W YRF1-7P0CX15 1859 aa6.02□□□□□ -1.45
SSH4YKL124W YRF1-6P53819 1859 aa6.02□□□□□ -1.45
SSH4YKL124W YIL177CP40434 1758 aa6.02□□□□□ -1.45
SSH4YKL124W YJL225CP40889 1758 aa6.02□□□□□ -1.45
SSH4YKL124W LEU3P08638 886 aa6.02□□□□□ -1.45
SSH4YKL124W IOC4Q04213 475 aa6.02□□□□□ -1.45
SSH4YKL124W YEF3P16521 1044 aaKnown RBP6.01□□□□□ -1.45
SSH4YKL124W CSE4P36012 229 aa6.01□□□□□ -1.45
SSH4YKL124W UBP9P39967 754 aa6.01□□□□□ -1.45
SSH4YKL124W TIF4632P39936 914 aaKnown RBP6□□□□□ -1.45
SSH4YKL124W DOT5P40553 215 aa6□□□□□ -1.45
SSH4YKL124W RPS24AP0CX31 135 aaKnown RBP5.99□□□□□ -1.45
SSH4YKL124W RPS24BP0CX32 135 aaKnown RBP5.99□□□□□ -1.45
SSH4YKL124W GTT3P39996 337 aa5.99□□□□□ -1.45
SSH4YKL124W RPN11P43588 306 aaKnown RBP5.99□□□□□ -1.45
SSH4YKL124W FOX2Q02207 900 aaKnown RBP5.99□□□□□ -1.45
SSH4YKL124W MLP1Q02455 1875 aaKnown RBP5.98□□□□□ -1.45
SSH4YKL124W FKH1P40466 484 aa5.97□□□□□ -1.45
SSH4YKL124W SNF2P22082 1703 aa5.97□□□□□ -1.45
SSH4YKL124W XKS1P42826 600 aa5.96□□□□□ -1.45
SSH4YKL124W SIR4P11978 1358 aa5.96□□□□□ -1.45
SSH4YKL124W ENP1P38333 483 aaKnown RBP5.96□□□□□ -1.46
SSH4YKL124W PDI1P17967 522 aaKnown RBP5.95□□□□□ -1.46
SSH4YKL124W PRP40P33203 583 aaKnown RBP5.95□□□□□ -1.46
SSH4YKL124W YKL133CP36066 463 aa5.95□□□□□ -1.46
SSH4YKL124W LAM6Q08001 693 aa5.95□□□□□ -1.46
SSH4YKL124W YBL086CP38177 466 aa5.94□□□□□ -1.46
SSH4YKL124W NPR2P39923 615 aa5.94□□□□□ -1.46
SSH4YKL124W YJL181WP46987 611 aa5.94□□□□□ -1.46
SSH4YKL124W RTF1P53064 558 aa5.94□□□□□ -1.46
SSH4YKL124W MHP1P43638 1398 aa5.94□□□□□ -1.46
SSH4YKL124W EPS1P40557 701 aa5.94□□□□□ -1.46
SSH4YKL124W ORC1P54784 914 aaPredicted RBP5.94□□□□□ -1.46
Retrieved 100 of 5,963 RNA–protein pairs in 42.4 ms