RNA–Protein interactions for RNA: YKL020C

SPT23, Transcript of ER membrane protein involved in regulation of OLE1 transcription, yeast

Gene SPT23, Length 3,249 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPT23	YKL020C	SEC20	P28791	383 aa		4.66	□□□□□ -1.66
SPT23	YKL020C	RPT2	P40327	437 aa	Known RBP	4.66	□□□□□ -1.66
SPT23	YKL020C	VID30	P53076	958 aa		4.66	□□□□□ -1.66
SPT23	YKL020C	PRP3	Q03338	469 aa	Predicted RBP	4.66	□□□□□ -1.66
SPT23	YKL020C	ATG2	P53855	1592 aa		4.66	□□□□□ -1.66
SPT23	YKL020C	SSP1	P38871	571 aa		4.65	□□□□□ -1.66
SPT23	YKL020C	ALD3	P54114	506 aa		4.65	□□□□□ -1.66
SPT23	YKL020C	RRP15	Q06511	250 aa	Predicted RBP	4.65	□□□□□ -1.66
SPT23	YKL020C	RAD51	P25454	400 aa		4.65	□□□□□ -1.67
SPT23	YKL020C	MHP1	P43638	1398 aa		4.65	□□□□□ -1.67
SPT23	YKL020C	KOG1	P38873	1557 aa		4.65	□□□□□ -1.67
SPT23	YKL020C	SUP35	P05453	685 aa	Known RBP	4.65	□□□□□ -1.67
SPT23	YKL020C	YPP1	P46951	817 aa		4.65	□□□□□ -1.67
SPT23	YKL020C	YJR008W	P47085	338 aa		4.65	□□□□□ -1.67
SPT23	YKL020C	GEA1	P47102	1408 aa	Predicted RBP	4.64	□□□□□ -1.67
SPT23	YKL020C	NUP159	P40477	1460 aa		4.64	□□□□□ -1.67
SPT23	YKL020C	PCT1	P13259	424 aa		4.64	□□□□□ -1.67
SPT23	YKL020C	AIM20	P40451	204 aa		4.64	□□□□□ -1.67
SPT23	YKL020C	DJP1	P40564	432 aa		4.64	□□□□□ -1.67
SPT23	YKL020C	RCF1	Q03713	159 aa		4.64	□□□□□ -1.67
SPT23	YKL020C	TRM3	Q07527	1436 aa		4.64	□□□□□ -1.67
SPT23	YKL020C	YDR341C	Q05506	607 aa	Known RBP	4.64	□□□□□ -1.67
SPT23	YKL020C	KNS1	P32350	737 aa	Predicted RBP	4.63	□□□□□ -1.67
SPT23	YKL020C	SRP54	P20424	541 aa	Known RBP	4.63	□□□□□ -1.67
SPT23	YKL020C	CHZ1	P40019	153 aa	Predicted RBP	4.63	□□□□□ -1.67
SPT23	YKL020C	MSP1	P28737	362 aa		4.63	□□□□□ -1.67
SPT23	YKL020C	TY4A-J	P47023	414 aa		4.63	□□□□□ -1.67
SPT23	YKL020C	ZDS1	P50111	915 aa	Known RBP	4.63	□□□□□ -1.67
SPT23	YKL020C	MED8	P38304	223 aa		4.62	□□□□□ -1.67
SPT23	YKL020C	YVC1	Q12324	675 aa		4.62	□□□□□ -1.67
SPT23	YKL020C	DEP1	P31385	405 aa		4.62	□□□□□ -1.67
SPT23	YKL020C	RPC82	P32349	654 aa		4.62	□□□□□ -1.67
SPT23	YKL020C	GEF1	P37020	779 aa		4.62	□□□□□ -1.67
SPT23	YKL020C	GGA1	Q06336	557 aa		4.62	□□□□□ -1.67
SPT23	YKL020C	TSC11	P40061	1430 aa		4.62	□□□□□ -1.67
SPT23	YKL020C	TY1B-DR3	Q99231	1755 aa		4.61	□□□□□ -1.67
SPT23	YKL020C	SNQ2	P32568	1501 aa	Known RBP	4.61	□□□□□ -1.67
SPT23	YKL020C	PIM1	P36775	1133 aa		4.61	□□□□□ -1.67
SPT23	YKL020C	NPR3	P38742	1146 aa		4.61	□□□□□ -1.67
SPT23	YKL020C	MEH1	Q02205	184 aa		4.61	□□□□□ -1.67
SPT23	YKL020C	ERV41	Q04651	352 aa		4.61	□□□□□ -1.67
SPT23	YKL020C	BMS1	Q08965	1183 aa	Known RBP	4.61	□□□□□ -1.67
SPT23	YKL020C	PDR1	P12383	1068 aa		4.61	□□□□□ -1.67
SPT23	YKL020C	YMR124W	P39523	943 aa	Known RBP	4.61	□□□□□ -1.67
SPT23	YKL020C	CLF1	Q12309	687 aa	Predicted RBP	4.61	□□□□□ -1.67
SPT23	YKL020C	CLN1	P20437	546 aa		4.61	□□□□□ -1.67
SPT23	YKL020C	ECM1	P39715	212 aa		4.61	□□□□□ -1.67
SPT23	YKL020C	NFI1	Q12216	726 aa		4.61	□□□□□ -1.67
SPT23	YKL020C	TY4B-P	A0A0B7P3V8	1104 aa		4.6	□□□□□ -1.67
SPT23	YKL020C	IMH1	Q06704	911 aa	Known RBP	4.6	□□□□□ -1.67
SPT23	YKL020C	PSK2	Q08217	1101 aa		4.6	□□□□□ -1.67
SPT23	YKL020C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
SPT23	YKL020C	PDR5	P33302	1511 aa	Known RBP	4.6	□□□□□ -1.67
SPT23	YKL020C	VPS24	P36095	224 aa	Known RBP	4.6	□□□□□ -1.67
SPT23	YKL020C	DSN1	P40568	576 aa		4.6	□□□□□ -1.67
SPT23	YKL020C	PKH1	Q03407	766 aa		4.6	□□□□□ -1.67
SPT23	YKL020C	BRE1	Q07457	700 aa	Known RBP	4.59	□□□□□ -1.67
SPT23	YKL020C	VPS5	Q92331	675 aa		4.59	□□□□□ -1.67
SPT23	YKL020C	TY2B-LR1	P0C2J3	1770 aa		4.59	□□□□□ -1.67
SPT23	YKL020C	TY2B-F	P0CX63	1770 aa		4.59	□□□□□ -1.67
SPT23	YKL020C	TY2B-GR2	P0CX64	1770 aa		4.59	□□□□□ -1.67
SPT23	YKL020C	TY2B-C	P25384	1770 aa		4.59	□□□□□ -1.67
SPT23	YKL020C	TY2B-DR2	Q03494	1770 aa		4.59	□□□□□ -1.67
SPT23	YKL020C	TY1B-DR1	Q03855	1755 aa		4.59	□□□□□ -1.67
SPT23	YKL020C	TY2B-DR3	Q07791	1770 aa	Known RBP	4.59	□□□□□ -1.67
SPT23	YKL020C	TY2B-OR1	Q12113	1770 aa		4.59	□□□□□ -1.67
SPT23	YKL020C	TY2B-DR1	Q12472	1770 aa		4.59	□□□□□ -1.67
SPT23	YKL020C	TY2B-OR2	Q12501	1770 aa		4.59	□□□□□ -1.67
SPT23	YKL020C	CLB5	P30283	435 aa		4.59	□□□□□ -1.67
SPT23	YKL020C	YOR1	P53049	1477 aa		4.59	□□□□□ -1.67
SPT23	YKL020C	HEL2	Q05580	639 aa	Known RBP	4.59	□□□□□ -1.68
SPT23	YKL020C	YOR389W	Q08912	624 aa		4.59	□□□□□ -1.68
SPT23	YKL020C	NUP157	P40064	1391 aa	Known RBP	4.58	□□□□□ -1.68
SPT23	YKL020C	RPL5	P26321	297 aa	Known RBP	4.58	□□□□□ -1.68
SPT23	YKL020C	ARL1	P38116	183 aa	Known RBP	4.58	□□□□□ -1.68
SPT23	YKL020C	CIN4	P39110	191 aa		4.58	□□□□□ -1.68
SPT23	YKL020C	TAF1	P46677	1066 aa		4.58	□□□□□ -1.68
SPT23	YKL020C	FAR11	P53917	953 aa		4.58	□□□□□ -1.68
SPT23	YKL020C	YML020W	Q03722	664 aa		4.58	□□□□□ -1.68
SPT23	YKL020C	RAD2	P07276	1031 aa		4.57	□□□□□ -1.68
SPT23	YKL020C	TPS3	P38426	1054 aa	Known RBP	4.57	□□□□□ -1.68
SPT23	YKL020C	SSF1	P38789	453 aa	Predicted RBP	4.57	□□□□□ -1.68
SPT23	YKL020C	SEC27	P41811	889 aa	Known RBP	4.57	□□□□□ -1.68
SPT23	YKL020C	SYH1	Q02875	849 aa	Known RBP	4.57	□□□□□ -1.68
SPT23	YKL020C	YPR172W	Q06608	200 aa		4.57	□□□□□ -1.68
SPT23	YKL020C	TY3B-G	Q99315	1547 aa		4.57	□□□□□ -1.68
SPT23	YKL020C	SSA4	P22202	642 aa	Known RBP	4.57	□□□□□ -1.68
SPT23	YKL020C	PSR1	Q07800	427 aa		4.57	□□□□□ -1.68
SPT23	YKL020C	LSP1	Q12230	341 aa	Known RBP	4.57	□□□□□ -1.68
SPT23	YKL020C	GAL11	P19659	1081 aa		4.57	□□□□□ -1.68
SPT23	YKL020C	NOP7	P53261	605 aa	Known RBP	4.57	□□□□□ -1.68
SPT23	YKL020C	GDE1	Q02979	1223 aa		4.57	□□□□□ -1.68
SPT23	YKL020C	PDR15	Q04182	1529 aa	Known RBP	4.56	□□□□□ -1.68
SPT23	YKL020C	TY2B-B	Q12491	1770 aa		4.56	□□□□□ -1.68
SPT23	YKL020C	SWI3	P32591	825 aa		4.56	□□□□□ -1.68
SPT23	YKL020C	ORM2	Q06144	216 aa		4.56	□□□□□ -1.68
SPT23	YKL020C	ARO1	P08566	1588 aa	Known RBP	4.56	□□□□□ -1.68
SPT23	YKL020C	DNF1	P32660	1571 aa		4.56	□□□□□ -1.68
SPT23	YKL020C	ULS1	Q08562	1619 aa		4.56	□□□□□ -1.68
SPT23	YKL020C	GIR2	Q03768	265 aa	Predicted RBP	4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 25.5 ms