RNA–Protein interactions for RNA: ENST00000632629.1

NPHP3-ACAD11-202, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

APPRIS P1 TSL 2

Gene NPHP3-ACAD11, Length 695 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-202ENST00000632629 LSM11P83369 360 aaKnown RBP eCLIP9.77□□□□□ -0.85
NPHP3-ACAD11-202ENST00000632629 KHSRPQ92945 711 aaKnown RBP eCLIP9.77□□□□□ -0.854e-6■■■■□ 22.3
NPHP3-ACAD11-202ENST00000632629 MS4A4AQ96JQ5 239 aa9.76□□□□□ -0.85
NPHP3-ACAD11-202ENST00000632629 SOX12O15370 315 aa9.75□□□□□ -0.85
NPHP3-ACAD11-202ENST00000632629 TRIM41Q8WV44 630 aa9.72□□□□□ -0.85
NPHP3-ACAD11-202ENST00000632629 PHF8Q9UPP1 1060 aa9.72□□□□□ -0.85
NPHP3-ACAD11-202ENST00000632629 PLA2G2EQ9NZK7 142 aa9.71□□□□□ -0.86
NPHP3-ACAD11-202ENST00000632629 PBX2P40425 430 aa9.67□□□□□ -0.86
NPHP3-ACAD11-202ENST00000632629 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.65□□□□□ -0.86
NPHP3-ACAD11-202ENST00000632629 POTEEQ6S8J3 1075 aa9.65□□□□□ -0.86
NPHP3-ACAD11-202ENST00000632629 ZFP91Q96JP5 570 aaPredicted RBP9.65□□□□□ -0.86
NPHP3-ACAD11-202ENST00000632629 HCSTQ9UBK5 93 aa9.65□□□□□ -0.86
NPHP3-ACAD11-202ENST00000632629 AXIN2Q9Y2T1 843 aa9.65□□□□□ -0.86
NPHP3-ACAD11-202ENST00000632629 RIOK3O14730 519 aaKnown RBP9.64□□□□□ -0.87
NPHP3-ACAD11-202ENST00000632629 NUDT7P0C024 238 aa9.64□□□□□ -0.87
NPHP3-ACAD11-202ENST00000632629 RNF25Q96BH1 459 aaPredicted RBP9.62□□□□□ -0.87
NPHP3-ACAD11-202ENST00000632629 LHX6Q9UPM6 363 aa9.61□□□□□ -0.87
NPHP3-ACAD11-202ENST00000632629 VGFO15240 615 aaPredicted RBP9.6□□□□□ -0.87
NPHP3-ACAD11-202ENST00000632629 NLRP6P59044 892 aa9.59□□□□□ -0.87
NPHP3-ACAD11-202ENST00000632629 KIF3CO14782 793 aa9.58□□□□□ -0.88
NPHP3-ACAD11-202ENST00000632629 FBXO22Q8NEZ5 403 aa9.58□□□□□ -0.88
NPHP3-ACAD11-202ENST00000632629 C2orf72A6NCS6 295 aa9.57□□□□□ -0.88
NPHP3-ACAD11-202ENST00000632629 ADGRD1Q6QNK2 874 aa9.56□□□□□ -0.88
NPHP3-ACAD11-202ENST00000632629 PCDHGA4Q9Y5G9 962 aa9.56□□□□□ -0.88
NPHP3-ACAD11-202ENST00000632629 ARHGAP33O14559 1287 aa9.53□□□□□ -0.88
NPHP3-ACAD11-202ENST00000632629 SLC34A2O95436 690 aa9.53□□□□□ -0.88
NPHP3-ACAD11-202ENST00000632629 MFRPQ9BY79 579 aa9.49□□□□□ -0.89
NPHP3-ACAD11-202ENST00000632629 BCL11BQ9C0K0 894 aaPredicted RBP9.49□□□□□ -0.89
NPHP3-ACAD11-202ENST00000632629 PSDA5PKW4 1024 aaPredicted RBP9.47□□□□□ -0.89
NPHP3-ACAD11-202ENST00000632629 TK2O00142 265 aa9.47□□□□□ -0.89
NPHP3-ACAD11-202ENST00000632629 HRO43593 1189 aa9.47□□□□□ -0.89
NPHP3-ACAD11-202ENST00000632629 DMRTA1Q5VZB9 504 aa9.46□□□□□ -0.9
NPHP3-ACAD11-202ENST00000632629 STK24Q9Y6E0 443 aa9.46□□□□□ -0.9
NPHP3-ACAD11-202ENST00000632629 TMC2Q8TDI7 906 aa9.45□□□□□ -0.9
NPHP3-ACAD11-202ENST00000632629 KCTD12Q96CX2 325 aaKnown RBP9.45□□□□□ -0.9
NPHP3-ACAD11-202ENST00000632629 PSEN2P49810 448 aa9.44□□□□□ -0.9
NPHP3-ACAD11-202ENST00000632629 KDM4FA0A1W2PPD8 638 aa9.42□□□□□ -0.9
NPHP3-ACAD11-202ENST00000632629 TAOK2Q9UL54 1235 aa9.42□□□□□ -0.9
NPHP3-ACAD11-202ENST00000632629 STAC3Q96MF2 364 aa9.4□□□□□ -0.9
NPHP3-ACAD11-202ENST00000632629 STK25O00506 426 aa9.37□□□□□ -0.91
NPHP3-ACAD11-202ENST00000632629 RGS20O76081 388 aa9.36□□□□□ -0.91
NPHP3-ACAD11-202ENST00000632629 PTCD2Q8WV60 388 aaKnown RBP9.36□□□□□ -0.91
NPHP3-ACAD11-202ENST00000632629 IRX2Q9BZI1 471 aaPredicted RBP9.36□□□□□ -0.91
NPHP3-ACAD11-202ENST00000632629 PTPN5P54829 565 aa9.35□□□□□ -0.91
NPHP3-ACAD11-202ENST00000632629 PPP4R3BQ5MIZ7 849 aa9.35□□□□□ -0.91
NPHP3-ACAD11-202ENST00000632629 IFFO2Q5TF58 517 aa9.32□□□□□ -0.92
NPHP3-ACAD11-202ENST00000632629 KCNK17Q96T54 332 aa9.31□□□□□ -0.92
NPHP3-ACAD11-202ENST00000632629 PPP1R37O75864 691 aa9.3□□□□□ -0.92
NPHP3-ACAD11-202ENST00000632629 VPS9D1Q9Y2B5 631 aa9.3□□□□□ -0.92
NPHP3-ACAD11-202ENST00000632629 KCNH8Q96L42 1107 aa9.29□□□□□ -0.92
NPHP3-ACAD11-202ENST00000632629 PLPP6Q8IY26 295 aa9.28□□□□□ -0.92
NPHP3-ACAD11-202ENST00000632629 A0A0G2JS52 829 aa9.27□□□□□ -0.93
NPHP3-ACAD11-202ENST00000632629 FOXK1P85037 733 aa9.27□□□□□ -0.93
NPHP3-ACAD11-202ENST00000632629 TBC1D12O60347 775 aa9.26□□□□□ -0.93
NPHP3-ACAD11-202ENST00000632629 THSD4Q6ZMP0 1018 aa9.25□□□□□ -0.93
NPHP3-ACAD11-202ENST00000632629 SLC4A5Q9BY07 1137 aa9.22□□□□□ -0.93
NPHP3-ACAD11-202ENST00000632629 GPHNQ9NQX3 736 aaPredicted RBP9.22□□□□□ -0.93
NPHP3-ACAD11-202ENST00000632629 BHMG1C9JSJ3 638 aaPredicted RBP9.21□□□□□ -0.94
NPHP3-ACAD11-202ENST00000632629 DSG2Q14126 1118 aa9.21□□□□□ -0.94
NPHP3-ACAD11-202ENST00000632629 WNT2BQ93097 391 aa9.2□□□□□ -0.94
NPHP3-ACAD11-202ENST00000632629 GOLGA8CPA6NN73 597 aa9.19□□□□□ -0.94
NPHP3-ACAD11-202ENST00000632629 ECM2O94769 699 aaPredicted RBP9.19□□□□□ -0.94
NPHP3-ACAD11-202ENST00000632629 BCL2L12Q9HB09 334 aa9.18□□□□□ -0.94
NPHP3-ACAD11-202ENST00000632629 ZNF454Q8N9F8 522 aa9.17□□□□□ -0.94
NPHP3-ACAD11-202ENST00000632629 MRPL50Q8N5N7 158 aaKnown RBP9.16□□□□□ -0.94
NPHP3-ACAD11-202ENST00000632629 RGL2O15211 777 aa9.15□□□□□ -0.94
NPHP3-ACAD11-202ENST00000632629 PTPREP23469 700 aa9.14□□□□□ -0.95
NPHP3-ACAD11-202ENST00000632629 Q6ZNB5 142 aa9.14□□□□□ -0.95
NPHP3-ACAD11-202ENST00000632629 OXER1Q8TDS5 423 aa9.14□□□□□ -0.95
NPHP3-ACAD11-202ENST00000632629 ZBED2Q9BTP6 218 aa9.14□□□□□ -0.95
NPHP3-ACAD11-202ENST00000632629 UPF1Q92900 1129 aaKnown RBP eCLIP9.12□□□□□ -0.95
NPHP3-ACAD11-202ENST00000632629 FOSBP53539 338 aa9.1□□□□□ -0.95
NPHP3-ACAD11-202ENST00000632629 NBPF3Q9H094 633 aa9.09□□□□□ -0.95
NPHP3-ACAD11-202ENST00000632629 ITGBL1O95965 494 aaPredicted RBP9.08□□□□□ -0.96
NPHP3-ACAD11-202ENST00000632629 PKD2Q13563 968 aa9.06□□□□□ -0.96
NPHP3-ACAD11-202ENST00000632629 ADAM33Q9BZ11 813 aa9.04□□□□□ -0.96
NPHP3-ACAD11-202ENST00000632629 ZDHHC16Q969W1 377 aa9.03□□□□□ -0.96
NPHP3-ACAD11-202ENST00000632629 JPH4Q96JJ6 628 aa9.03□□□□□ -0.96
NPHP3-ACAD11-202ENST00000632629 ANO8Q9HCE9 1232 aaPredicted RBP9.03□□□□□ -0.96
NPHP3-ACAD11-202ENST00000632629 ANKK1Q8NFD2 765 aa9.02□□□□□ -0.97
NPHP3-ACAD11-202ENST00000632629 BCAMP50895 628 aa9□□□□□ -0.97
NPHP3-ACAD11-202ENST00000632629 PPP1R15BQ5SWA1 713 aa9□□□□□ -0.97
NPHP3-ACAD11-202ENST00000632629 CRISPLD2Q9H0B8 497 aa8.99□□□□□ -0.97
NPHP3-ACAD11-202ENST00000632629 RABGEF1Q9UJ41 708 aa8.99□□□□□ -0.97
NPHP3-ACAD11-202ENST00000632629 LCE2BO14633 110 aa8.98□□□□□ -0.97
NPHP3-ACAD11-202ENST00000632629 EVI5O60447 810 aa8.98□□□□□ -0.97
NPHP3-ACAD11-202ENST00000632629 PPP1R3GB7ZBB8 358 aa8.97□□□□□ -0.97
NPHP3-ACAD11-202ENST00000632629 KCNC4Q03721 635 aa8.97□□□□□ -0.97
NPHP3-ACAD11-202ENST00000632629 LAPTM4AQ15012 233 aa8.97□□□□□ -0.97
NPHP3-ACAD11-202ENST00000632629 PROX2Q3B8N5 592 aa8.97□□□□□ -0.97
NPHP3-ACAD11-202ENST00000632629 SOWAHBA6NEL2 793 aa8.96□□□□□ -0.98
NPHP3-ACAD11-202ENST00000632629 TRAF7Q6Q0C0 670 aa8.96□□□□□ -0.98
NPHP3-ACAD11-202ENST00000632629 NYAP1Q6ZVC0 841 aa8.96□□□□□ -0.98
NPHP3-ACAD11-202ENST00000632629 HS6ST3Q8IZP7 471 aa8.95□□□□□ -0.98
NPHP3-ACAD11-202ENST00000632629 WBP1LQ9NX94 342 aa8.94□□□□□ -0.98
NPHP3-ACAD11-202ENST00000632629 GFRA3O60609 400 aa8.93□□□□□ -0.98
NPHP3-ACAD11-202ENST00000632629 COL9A1P20849 921 aa8.93□□□□□ -0.98
NPHP3-ACAD11-202ENST00000632629 LAPTM4BQ86VI4 370 aa8.93□□□□□ -0.98
NPHP3-ACAD11-202ENST00000632629 ZFRQ96KR1 1074 aaKnown RBP8.92□□□□□ -0.98
NPHP3-ACAD11-202ENST00000632629 NCKAP5LQ9HCH0 1330 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms