RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 DENND4BO75064 1496 aaPredicted RBP8.24□□□□□ -1.09
SHMT1-211ENST00000618902 GPATCH8Q9UKJ3 1502 aaKnown RBP8.24□□□□□ -1.09
SHMT1-211ENST00000618902 PLPPR3Q6T4P5 718 aa8.23□□□□□ -1.09
SHMT1-211ENST00000618902 NCOA2Q15596 1464 aa8.23□□□□□ -1.09
SHMT1-211ENST00000618902 CDC42BPAQ5VT25 1732 aa8.21□□□□□ -1.09
SHMT1-211ENST00000618902 CDC42BPBQ9Y5S2 1711 aa8.21□□□□□ -1.09
SHMT1-211ENST00000618902 RSPH4AQ5TD94 716 aa8.21□□□□□ -1.1
SHMT1-211ENST00000618902 PPARGC1BQ86YN6 1023 aaKnown RBP8.21□□□□□ -1.1
SHMT1-211ENST00000618902 ZNF518AQ6AHZ1 1483 aa8.2□□□□□ -1.1
SHMT1-211ENST00000618902 PLEKHH2Q8IVE3 1493 aa8.2□□□□□ -1.1
SHMT1-211ENST00000618902 ZMYM4Q5VZL5 1548 aa8.2□□□□□ -1.1
SHMT1-211ENST00000618902 ARHGEF12Q9NZN5 1544 aa8.2□□□□□ -1.1
SHMT1-211ENST00000618902 RAPGEF3O95398 923 aa8.2□□□□□ -1.1
SHMT1-211ENST00000618902 PREX2Q70Z35 1606 aa8.2□□□□□ -1.1
SHMT1-211ENST00000618902 ZNF644Q9H582 1327 aaPredicted RBP8.2□□□□□ -1.1
SHMT1-211ENST00000618902 MYO5CQ9NQX4 1742 aa8.2□□□□□ -1.1
SHMT1-211ENST00000618902 POGZQ7Z3K3 1410 aa8.2□□□□□ -1.1
SHMT1-211ENST00000618902 KIAA1107Q9UPP5 1409 aa8.2□□□□□ -1.1
SHMT1-211ENST00000618902 ADGRL1O94910 1474 aa8.19□□□□□ -1.1
SHMT1-211ENST00000618902 CCNB3Q8WWL7 1395 aa8.19□□□□□ -1.1
SHMT1-211ENST00000618902 ARHGAP5Q13017 1502 aa8.19□□□□□ -1.1
SHMT1-211ENST00000618902 FRMPD1Q5SYB0 1578 aa8.18□□□□□ -1.1
SHMT1-211ENST00000618902 SUPT6HQ7KZ85 1726 aaKnown RBP8.18□□□□□ -1.1
SHMT1-211ENST00000618902 SCAPERQ9BY12 1400 aa8.18□□□□□ -1.1
SHMT1-211ENST00000618902 SAMD9LQ8IVG5 1584 aa8.18□□□□□ -1.1
SHMT1-211ENST00000618902 APLP2Q06481 763 aa8.17□□□□□ -1.1
SHMT1-211ENST00000618902 SENP3Q9H4L4 574 aaPredicted RBP8.17□□□□□ -1.1
SHMT1-211ENST00000618902 TRAPPC8Q9Y2L5 1435 aa8.17□□□□□ -1.1
SHMT1-211ENST00000618902 MLH3Q9UHC1 1453 aa8.17□□□□□ -1.1
SHMT1-211ENST00000618902 KDM4FA0A1W2PPD8 638 aa8.16□□□□□ -1.1
SHMT1-211ENST00000618902 ABCC1P33527 1531 aa8.16□□□□□ -1.1
SHMT1-211ENST00000618902 RICTORQ6R327 1708 aa8.16□□□□□ -1.1
SHMT1-211ENST00000618902 CFDP1Q9UEE9 299 aaPredicted RBP8.16□□□□□ -1.1
SHMT1-211ENST00000618902 ZNF777Q9ULD5 760 aaPredicted RBP8.16□□□□□ -1.1
SHMT1-211ENST00000618902 MYOM3Q5VTT5 1437 aa8.15□□□□□ -1.1
SHMT1-211ENST00000618902 HNRNPMP52272 730 aaKnown RBP eCLIP8.15□□□□□ -1.1
SHMT1-211ENST00000618902 AFAP1Q8N556 730 aa8.15□□□□□ -1.1
SHMT1-211ENST00000618902 KDM5CP41229 1560 aa8.14□□□□□ -1.11
SHMT1-211ENST00000618902 REREQ9P2R6 1566 aa8.14□□□□□ -1.11
SHMT1-211ENST00000618902 ARHGEF40Q8TER5 1519 aa8.14□□□□□ -1.11
SHMT1-211ENST00000618902 MBD5Q9P267 1494 aa8.14□□□□□ -1.11
SHMT1-211ENST00000618902 PPP6R1Q9UPN7 881 aa8.14□□□□□ -1.11
SHMT1-211ENST00000618902 SYCP2Q9BX26 1530 aa8.13□□□□□ -1.11
SHMT1-211ENST00000618902 ATP10AO60312 1499 aa8.13□□□□□ -1.11
SHMT1-211ENST00000618902 YEATS2Q9ULM3 1422 aa8.13□□□□□ -1.11
SHMT1-211ENST00000618902 ITSN2Q9NZM3 1697 aa8.13□□□□□ -1.11
SHMT1-211ENST00000618902 ZFYVE16Q7Z3T8 1539 aa8.13□□□□□ -1.11
SHMT1-211ENST00000618902 CAMSAP2Q08AD1 1489 aa8.13□□□□□ -1.11
SHMT1-211ENST00000618902 C9orf84Q5VXU9 1444 aa8.12□□□□□ -1.11
SHMT1-211ENST00000618902 FGD6Q6ZV73 1430 aa8.12□□□□□ -1.11
SHMT1-211ENST00000618902 RTEL1-TNFRSF6BF6WH68 1400 aa8.12□□□□□ -1.11
SHMT1-211ENST00000618902 MIA2Q96PC5 1412 aa8.12□□□□□ -1.11
SHMT1-211ENST00000618902 ARID4BQ4LE39 1312 aaPredicted RBP8.1□□□□□ -1.11
SHMT1-211ENST00000618902 AGLP35573 1532 aa8.1□□□□□ -1.11
SHMT1-211ENST00000618902 TCOF1Q13428 1488 aaKnown RBP8.1□□□□□ -1.11
SHMT1-211ENST00000618902 HECW2Q9P2P5 1572 aa8.1□□□□□ -1.11
SHMT1-211ENST00000618902 SIGLEC1Q9BZZ2 1709 aa8.09□□□□□ -1.11
SHMT1-211ENST00000618902 SPAG9O60271 1321 aaKnown RBP8.09□□□□□ -1.11
SHMT1-211ENST00000618902 PTPN23Q9H3S7 1636 aa8.09□□□□□ -1.11
SHMT1-211ENST00000618902 ABCC5O15440 1437 aa8.09□□□□□ -1.11
SHMT1-211ENST00000618902 CNTLNQ9NXG0 1405 aa8.09□□□□□ -1.11
SHMT1-211ENST00000618902 KIDINS220Q9ULH0 1771 aa8.09□□□□□ -1.11
SHMT1-211ENST00000618902 ADAMTSL3P82987 1691 aa8.08□□□□□ -1.12
SHMT1-211ENST00000618902 SETD1BQ9UPS6 1966 aaKnown RBP8.08□□□□□ -1.12
SHMT1-211ENST00000618902 TSPY4P0CV99 314 aa8.08□□□□□ -1.12
SHMT1-211ENST00000618902 TSPY10P0CW01 314 aa8.08□□□□□ -1.12
SHMT1-211ENST00000618902 PTPRKQ15262 1439 aa8.08□□□□□ -1.12
SHMT1-211ENST00000618902 ARHGEF5Q12774 1597 aa8.08□□□□□ -1.12
SHMT1-211ENST00000618902 BCORL1Q5H9F3 1711 aa8.08□□□□□ -1.12
SHMT1-211ENST00000618902 FAM135AQ9P2D6 1515 aa8.08□□□□□ -1.12
SHMT1-211ENST00000618902 ABCA6Q8N139 1617 aa8.07□□□□□ -1.12
SHMT1-211ENST00000618902 CCDC141Q6ZP82 1450 aa8.07□□□□□ -1.12
SHMT1-211ENST00000618902 INO80Q9ULG1 1556 aaPredicted RBP8.07□□□□□ -1.12
SHMT1-211ENST00000618902 DIP2CQ9Y2E4 1556 aa8.07□□□□□ -1.12
SHMT1-211ENST00000618902 PTPRMP28827 1452 aa8.06□□□□□ -1.12
SHMT1-211ENST00000618902 RRBP1Q9P2E9 1410 aaKnown RBP8.06□□□□□ -1.12
SHMT1-211ENST00000618902 FAM50AQ14320 339 aaKnown RBP8.06□□□□□ -1.12
SHMT1-211ENST00000618902 ESF1Q9H501 851 aaKnown RBP8.06□□□□□ -1.12
SHMT1-211ENST00000618902 MYT1LQ9UL68 1186 aa8.06□□□□□ -1.12
SHMT1-211ENST00000618902 DAPK1P53355 1430 aa8.05□□□□□ -1.12
SHMT1-211ENST00000618902 ATP7AQ04656 1500 aa8.05□□□□□ -1.12
SHMT1-211ENST00000618902 DNMT1P26358 1616 aaKnown RBP8.04□□□□□ -1.12
SHMT1-211ENST00000618902 MAST1Q9Y2H9 1570 aa8.04□□□□□ -1.12
SHMT1-211ENST00000618902 DHX29Q7Z478 1369 aaKnown RBP8.03□□□□□ -1.12
SHMT1-211ENST00000618902 CHIC2Q9UKJ5 165 aa8.03□□□□□ -1.12
SHMT1-211ENST00000618902 CROCC2H7BZ55 1655 aa8.02□□□□□ -1.13
SHMT1-211ENST00000618902 A2MP01023 1474 aa8.02□□□□□ -1.13
SHMT1-211ENST00000618902 SHANK2Q9UPX8 1470 aa8.02□□□□□ -1.13
SHMT1-211ENST00000618902 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.02□□□□□ -1.13
SHMT1-211ENST00000618902 ADGBQ8N7X0 1667 aa8.02□□□□□ -1.13
SHMT1-211ENST00000618902 PLXNC1O60486 1568 aa8.01□□□□□ -1.13
SHMT1-211ENST00000618902 ITGAEP38570 1179 aa8.01□□□□□ -1.13
SHMT1-211ENST00000618902 NPATQ14207 1427 aa8.01□□□□□ -1.13
SHMT1-211ENST00000618902 NCOA1Q15788 1441 aa8.01□□□□□ -1.13
SHMT1-211ENST00000618902 ADGRL2O95490 1459 aa8□□□□□ -1.13
SHMT1-211ENST00000618902 MLECQ14165 292 aa8□□□□□ -1.13
SHMT1-211ENST00000618902 RRP7BPQ9NSQ0 103 aa8□□□□□ -1.13
SHMT1-211ENST00000618902 DMRT2Q9Y5R5 561 aa8□□□□□ -1.13
SHMT1-211ENST00000618902 MADDQ8WXG6 1647 aa8□□□□□ -1.13
SHMT1-211ENST00000618902 KIF15Q9NS87 1388 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms