RNA–Protein interactions for RNA: ENST00000613073.4

CNOT3-208, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-208ENST00000613073 KIF14Q15058 1648 aa23.48■■□□□ 1.35
CNOT3-208ENST00000613073 DAPK1P53355 1430 aa23.47■■□□□ 1.35
CNOT3-208ENST00000613073 PLEKHD1A6NEE1 506 aa23.47■■□□□ 1.35
CNOT3-208ENST00000613073 BCANQ96GW7 911 aa23.46■■□□□ 1.35
CNOT3-208ENST00000613073 ABCA8O94911 1581 aa23.45■■□□□ 1.35
CNOT3-208ENST00000613073 ABCC5O15440 1437 aa23.45■■□□□ 1.34
CNOT3-208ENST00000613073 PTPRGP23470 1445 aa23.45■■□□□ 1.34
CNOT3-208ENST00000613073 TIMELESSQ9UNS1 1208 aa23.44■■□□□ 1.34
CNOT3-208ENST00000613073 ATP10BO94823 1461 aa23.44■■□□□ 1.34
CNOT3-208ENST00000613073 GCC2Q8IWJ2 1684 aa23.44■■□□□ 1.34
CNOT3-208ENST00000613073 PPP1R15AO75807 674 aaPredicted RBP23.43■■□□□ 1.34
CNOT3-208ENST00000613073 TONSLQ96HA7 1378 aa23.43■■□□□ 1.34
CNOT3-208ENST00000613073 GPATCH8Q9UKJ3 1502 aaKnown RBP23.42■■□□□ 1.34
CNOT3-208ENST00000613073 AKNAQ7Z591 1439 aa23.41■■□□□ 1.34
CNOT3-208ENST00000613073 DNMT1P26358 1616 aaKnown RBP23.4■■□□□ 1.34
CNOT3-208ENST00000613073 CAMSAP2Q08AD1 1489 aa23.39■■□□□ 1.34
CNOT3-208ENST00000613073 HIRIP3Q9BW71 556 aaPredicted RBP23.38■■□□□ 1.33
CNOT3-208ENST00000613073 FOXD1Q16676 465 aa23.37■■□□□ 1.33
CNOT3-208ENST00000613073 MPHOSPH9Q99550 1183 aa23.37■■□□□ 1.33
CNOT3-208ENST00000613073 ADCY10Q96PN6 1610 aa23.36■■□□□ 1.33
CNOT3-208ENST00000613073 ITSN2Q9NZM3 1697 aa23.35■■□□□ 1.33
CNOT3-208ENST00000613073 DENND4BO75064 1496 aaPredicted RBP23.35■■□□□ 1.33
CNOT3-208ENST00000613073 ROCK1Q13464 1354 aa23.35■■□□□ 1.33
CNOT3-208ENST00000613073 ERCC6L2Q5T890 1561 aa23.31■■□□□ 1.32
CNOT3-208ENST00000613073 ABCC10Q5T3U5 1492 aa23.28■■□□□ 1.32
CNOT3-208ENST00000613073 CDC42BPAQ5VT25 1732 aa23.27■■□□□ 1.32
CNOT3-208ENST00000613073 SHROOM2Q13796 1616 aa23.27■■□□□ 1.32
CNOT3-208ENST00000613073 NCOA1Q15788 1441 aa23.25■■□□□ 1.31
CNOT3-208ENST00000613073 SLC4A1APQ9BWU0 796 aaKnown RBP23.25■■□□□ 1.31
CNOT3-208ENST00000613073 DDX10Q13206 875 aaKnown RBP23.24■■□□□ 1.31
CNOT3-208ENST00000613073 KCNH8Q96L42 1107 aa23.23■■□□□ 1.31
CNOT3-208ENST00000613073 HNRNPMP52272 730 aaKnown RBP eCLIP23.22■■□□□ 1.31
CNOT3-208ENST00000613073 ANKRD30AQ9BXX3 1397 aa23.19■■□□□ 1.3
CNOT3-208ENST00000613073 KDM5BQ9UGL1 1544 aa23.18■■□□□ 1.3
CNOT3-208ENST00000613073 FKBP8Q14318 412 aa23.18■■□□□ 1.3
CNOT3-208ENST00000613073 CROCC2H7BZ55 1655 aa23.17■■□□□ 1.3
CNOT3-208ENST00000613073 ADGBQ8N7X0 1667 aa23.17■■□□□ 1.3
CNOT3-208ENST00000613073 TSPY4P0CV99 314 aa23.16■■□□□ 1.3
CNOT3-208ENST00000613073 TSPY10P0CW01 314 aa23.16■■□□□ 1.3
CNOT3-208ENST00000613073 L3MBTL2Q969R5 705 aa23.15■■□□□ 1.3
CNOT3-208ENST00000613073 ANKRD30BQ9BXX2 1392 aa23.15■■□□□ 1.3
CNOT3-208ENST00000613073 ADGRL2O95490 1459 aa23.15■■□□□ 1.3
CNOT3-208ENST00000613073 C9orf84Q5VXU9 1444 aa23.14■■□□□ 1.29
CNOT3-208ENST00000613073 CLASP1Q7Z460 1538 aa23.13■■□□□ 1.29
CNOT3-208ENST00000613073 ABCC2Q92887 1545 aa23.13■■□□□ 1.29
CNOT3-208ENST00000613073 ANKRD50Q9ULJ7 1429 aa23.12■■□□□ 1.29
CNOT3-208ENST00000613073 RBM19Q9Y4C8 960 aaKnown RBP23.12■■□□□ 1.29
CNOT3-208ENST00000613073 PZPP20742 1482 aa23.11■■□□□ 1.29
CNOT3-208ENST00000613073 CDC42BPBQ9Y5S2 1711 aa23.09■■□□□ 1.29
CNOT3-208ENST00000613073 TTC37Q6PGP7 1564 aa23.08■■□□□ 1.28
CNOT3-208ENST00000613073 PKD2Q13563 968 aa23.07■■□□□ 1.28
CNOT3-208ENST00000613073 SAMD9LQ8IVG5 1584 aa23.07■■□□□ 1.28
CNOT3-208ENST00000613073 MBD5Q9P267 1494 aa23.07■■□□□ 1.28
CNOT3-208ENST00000613073 RPRD2Q5VT52 1461 aaKnown RBP23.06■■□□□ 1.28
CNOT3-208ENST00000613073 PREX2Q70Z35 1606 aa23.06■■□□□ 1.28
CNOT3-208ENST00000613073 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.06■■□□□ 1.283e-6■■■■□ 22.7
CNOT3-208ENST00000613073 SHANK2Q9UPX8 1470 aa23.05■■□□□ 1.28
CNOT3-208ENST00000613073 PRKCSHP14314 528 aaPredicted RBP23.05■■□□□ 1.28
CNOT3-208ENST00000613073 KIF15Q9NS87 1388 aa23.04■■□□□ 1.28
CNOT3-208ENST00000613073 ARHGAP5Q13017 1502 aa23.04■■□□□ 1.28
CNOT3-208ENST00000613073 NUP155O75694 1391 aa23.04■■□□□ 1.28
CNOT3-208ENST00000613073 HSPA5P11021 654 aaKnown RBP23.01■■□□□ 1.27
CNOT3-208ENST00000613073 CCDC141Q6ZP82 1450 aa23.01■■□□□ 1.27
CNOT3-208ENST00000613073 ARHGEF5Q12774 1597 aa23■■□□□ 1.27
CNOT3-208ENST00000613073 NBPF8Q3BBV2 869 aa23■■□□□ 1.27
CNOT3-208ENST00000613073 SYCP2Q9BX26 1530 aa23■■□□□ 1.27
CNOT3-208ENST00000613073 KIAA1107Q9UPP5 1409 aa23■■□□□ 1.27
CNOT3-208ENST00000613073 ZCCHC11Q5TAX3 1644 aaKnown RBP22.99■■□□□ 1.27
CNOT3-208ENST00000613073 TEX14Q8IWB6 1497 aa22.97■■□□□ 1.27
CNOT3-208ENST00000613073 EIF4G2P78344 907 aaKnown RBP eCLIP22.96■■□□□ 1.27
CNOT3-208ENST00000613073 RSPH4AQ5TD94 716 aa22.96■■□□□ 1.27
CNOT3-208ENST00000613073 MSH5O43196 834 aa22.95■■□□□ 1.26
CNOT3-208ENST00000613073 MYO5CQ9NQX4 1742 aa22.94■■□□□ 1.26
CNOT3-208ENST00000613073 UHRF1BP1LA0JNW5 1464 aa22.94■■□□□ 1.26
CNOT3-208ENST00000613073 ZNF326Q5BKZ1 582 aaKnown RBP22.92■■□□□ 1.26
CNOT3-208ENST00000613073 ANP32CO43423 234 aa22.91■■□□□ 1.26
CNOT3-208ENST00000613073 NEFLP07196 543 aa22.91■■□□□ 1.26
CNOT3-208ENST00000613073 WASHC2AQ641Q2 1341 aa22.9■■□□□ 1.26
CNOT3-208ENST00000613073 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.89■■□□□ 1.253e-9■■■□□ 16.4
CNOT3-208ENST00000613073 PLCH2O75038 1416 aa22.88■■□□□ 1.25
CNOT3-208ENST00000613073 EFCAB2Q5VUJ9 269 aa22.88■■□□□ 1.25
CNOT3-208ENST00000613073 ARHGEF12Q9NZN5 1544 aa22.88■■□□□ 1.25
CNOT3-208ENST00000613073 C11orf95C9JLR9 678 aaPredicted RBP22.84■■□□□ 1.25
CNOT3-208ENST00000613073 PLEKHH2Q8IVE3 1493 aa22.84■■□□□ 1.25
CNOT3-208ENST00000613073 KDM5DQ9BY66 1539 aa22.83■■□□□ 1.25
CNOT3-208ENST00000613073 ERICH6Q7L0X2 663 aa22.81■■□□□ 1.24
CNOT3-208ENST00000613073 FAM135AQ9P2D6 1515 aa22.8■■□□□ 1.24
CNOT3-208ENST00000613073 OSCARQ8IYS5 282 aa22.8■■□□□ 1.24
CNOT3-208ENST00000613073 KDM2AQ9Y2K7 1162 aa22.8■■□□□ 1.24
CNOT3-208ENST00000613073 MAST1Q9Y2H9 1570 aa22.79■■□□□ 1.24
CNOT3-208ENST00000613073 TRAPPC8Q9Y2L5 1435 aa22.79■■□□□ 1.24
CNOT3-208ENST00000613073 AFAP1Q8N556 730 aa22.78■■□□□ 1.24
CNOT3-208ENST00000613073 WDR7Q9Y4E6 1490 aa22.76■■□□□ 1.23
CNOT3-208ENST00000613073 CCER2I3L3R5 266 aa22.76■■□□□ 1.23
CNOT3-208ENST00000613073 ABCC1P33527 1531 aa22.75■■□□□ 1.23
CNOT3-208ENST00000613073 DCAF11Q8TEB1 546 aa22.74■■□□□ 1.23
CNOT3-208ENST00000613073 CCDC7Q96M83 1385 aa22.73■■□□□ 1.23
CNOT3-208ENST00000613073 SPATA31E1Q6ZUB1 1445 aa22.73■■□□□ 1.23
CNOT3-208ENST00000613073 PLXNC1O60486 1568 aa22.73■■□□□ 1.23
CNOT3-208ENST00000613073 SPAG9O60271 1321 aaKnown RBP22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms