RNA–Protein interactions for RNA: ENST00000610726.4

CSDE1-218, Transcript of cold shock domain containing E1, humanhuman

TSL 5 BASIC

Gene CSDE1, Length 4,312 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-218ENST00000610726 TOP2BQ02880 1626 aa9.7□□□□□ -0.86
CSDE1-218ENST00000610726 GRIN2BQ13224 1484 aa9.7□□□□□ -0.86
CSDE1-218ENST00000610726 TMF1P82094 1093 aa9.69□□□□□ -0.86
CSDE1-218ENST00000610726 NEUROD2Q15784 382 aa9.69□□□□□ -0.86
CSDE1-218ENST00000610726 STK26Q9P289 416 aa9.68□□□□□ -0.86
CSDE1-218ENST00000610726 SUPT16HQ9Y5B9 1047 aaKnown RBP9.68□□□□□ -0.86
CSDE1-218ENST00000610726 MRC2Q9UBG0 1479 aa9.67□□□□□ -0.86
CSDE1-218ENST00000610726 NUTM2DQ5VT03 806 aaPredicted RBP9.66□□□□□ -0.86
CSDE1-218ENST00000610726 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.66□□□□□ -0.86
CSDE1-218ENST00000610726 ERICH3Q5RHP9 1530 aa9.66□□□□□ -0.86
CSDE1-218ENST00000610726 CFAP53Q96M91 514 aa9.65□□□□□ -0.86
CSDE1-218ENST00000610726 LRRC9Q6ZRR7 1453 aa9.65□□□□□ -0.86
CSDE1-218ENST00000610726 FGD6Q6ZV73 1430 aa9.65□□□□□ -0.86
CSDE1-218ENST00000610726 WASHC2CQ9Y4E1 1318 aa9.65□□□□□ -0.86
CSDE1-218ENST00000610726 SRPK2P78362 688 aaKnown RBP9.65□□□□□ -0.86
CSDE1-218ENST00000610726 ROCK2O75116 1388 aaKnown RBP9.65□□□□□ -0.87
CSDE1-218ENST00000610726 UNC13AQ9UPW8 1703 aa9.64□□□□□ -0.87
CSDE1-218ENST00000610726 CASKIN1Q8WXD9 1431 aa9.64□□□□□ -0.87
CSDE1-218ENST00000610726 ANP32AP39687 249 aaKnown RBP9.63□□□□□ -0.87
CSDE1-218ENST00000610726 MYOM3Q5VTT5 1437 aa9.63□□□□□ -0.87
CSDE1-218ENST00000610726 LMOD2Q6P5Q4 547 aa9.63□□□□□ -0.87
CSDE1-218ENST00000610726 IFT140Q96RY7 1462 aa9.62□□□□□ -0.87
CSDE1-218ENST00000610726 SOX12O15370 315 aa9.61□□□□□ -0.87
CSDE1-218ENST00000610726 DNMBPQ6XZF7 1577 aa9.61□□□□□ -0.87
CSDE1-218ENST00000610726 U2SURPO15042 1029 aaKnown RBP9.61□□□□□ -0.87
CSDE1-218ENST00000610726 NCOA2Q15596 1464 aa9.61□□□□□ -0.87
CSDE1-218ENST00000610726 PRG4Q92954 1404 aaPredicted RBP9.61□□□□□ -0.87
CSDE1-218ENST00000610726 PEG3Q9GZU2 1588 aa9.6□□□□□ -0.87
CSDE1-218ENST00000610726 SNAPC4Q5SXM2 1469 aa9.6□□□□□ -0.87
CSDE1-218ENST00000610726 ST20-MTHFSA0A0A6YYL1 179 aa9.6□□□□□ -0.87
CSDE1-218ENST00000610726 A0A0G2JS52 829 aa9.59□□□□□ -0.87
CSDE1-218ENST00000610726 CCER2I3L3R5 266 aa9.59□□□□□ -0.87
CSDE1-218ENST00000610726 HDGFP51858 240 aaKnown RBP9.59□□□□□ -0.87
CSDE1-218ENST00000610726 MYT1Q01538 1121 aa9.59□□□□□ -0.87
CSDE1-218ENST00000610726 PRDM2Q13029 1718 aa9.59□□□□□ -0.87
CSDE1-218ENST00000610726 AFAP1Q8N556 730 aa9.59□□□□□ -0.87
CSDE1-218ENST00000610726 NUDCQ9Y266 331 aa9.58□□□□□ -0.88
CSDE1-218ENST00000610726 MORC1Q86VD1 984 aa9.58□□□□□ -0.88
CSDE1-218ENST00000610726 LAS1LQ9Y4W2 734 aaKnown RBP9.58□□□□□ -0.88
CSDE1-218ENST00000610726 ABCA10Q8WWZ4 1543 aa9.58□□□□□ -0.88
CSDE1-218ENST00000610726 CCDC144AA2RUR9 1427 aa9.57□□□□□ -0.88
CSDE1-218ENST00000610726 MAPK8IP3Q9UPT6 1336 aa9.57□□□□□ -0.88
CSDE1-218ENST00000610726 TRAK1Q9UPV9 953 aa9.57□□□□□ -0.88
CSDE1-218ENST00000610726 KIF15Q9NS87 1388 aa9.57□□□□□ -0.88
CSDE1-218ENST00000610726 FAM69CQ0P6D2 419 aa9.57□□□□□ -0.88
CSDE1-218ENST00000610726 FYCO1Q9BQS8 1478 aa9.56□□□□□ -0.88
CSDE1-218ENST00000610726 HAP1P54257 671 aaPredicted RBP9.56□□□□□ -0.88
CSDE1-218ENST00000610726 LAMC3Q9Y6N6 1575 aa9.56□□□□□ -0.88
CSDE1-218ENST00000610726 KTN1Q86UP2 1357 aaKnown RBP9.54□□□□□ -0.88
CSDE1-218ENST00000610726 FRAT1Q92837 279 aaPredicted RBP9.54□□□□□ -0.88
CSDE1-218ENST00000610726 RRBP1Q9P2E9 1410 aaKnown RBP9.54□□□□□ -0.88
CSDE1-218ENST00000610726 URB2Q14146 1524 aaKnown RBP9.54□□□□□ -0.88
CSDE1-218ENST00000610726 ANKRD50Q9ULJ7 1429 aa9.54□□□□□ -0.88
CSDE1-218ENST00000610726 UPF2Q9HAU5 1272 aaKnown RBP9.53□□□□□ -0.88
CSDE1-218ENST00000610726 UACAQ9BZF9 1416 aa9.53□□□□□ -0.88
CSDE1-218ENST00000610726 NUTM2FA1L443 756 aa9.52□□□□□ -0.89
CSDE1-218ENST00000610726 EFCAB5A4FU69 1503 aa9.52□□□□□ -0.89
CSDE1-218ENST00000610726 SYNJ2O15056 1496 aa9.52□□□□□ -0.89
CSDE1-218ENST00000610726 B4GALNT3Q6L9W6 998 aa9.52□□□□□ -0.89
CSDE1-218ENST00000610726 HDGFL2Q7Z4V5 671 aaPredicted RBP9.51□□□□□ -0.89
CSDE1-218ENST00000610726 KIAA0586Q9BVV6 1533 aa9.51□□□□□ -0.89
CSDE1-218ENST00000610726 ZNF608Q9ULD9 1512 aaPredicted RBP9.51□□□□□ -0.89
CSDE1-218ENST00000610726 RALBP1Q15311 655 aa9.5□□□□□ -0.89
CSDE1-218ENST00000610726 HSP90AA1P07900 732 aaKnown RBP9.5□□□□□ -0.89
CSDE1-218ENST00000610726 FTSJ3Q8IY81 847 aaKnown RBP9.5□□□□□ -0.89
CSDE1-218ENST00000610726 USP47Q96K76 1375 aa9.5□□□□□ -0.89
CSDE1-218ENST00000610726 U2AF1L5P0DN76 240 aaPredicted RBP9.5□□□□□ -0.89
CSDE1-218ENST00000610726 U2AF1Q01081 240 aaKnown RBP eCLIP9.5□□□□□ -0.89
CSDE1-218ENST00000610726 PANK3Q9H999 370 aa9.5□□□□□ -0.89
CSDE1-218ENST00000610726 MYH16Q9H6N6 1097 aa9.49□□□□□ -0.89
CSDE1-218ENST00000610726 TROQ12816 1431 aaPredicted RBP9.49□□□□□ -0.89
CSDE1-218ENST00000610726 EIF3AQ14152 1382 aaKnown RBP9.49□□□□□ -0.89
CSDE1-218ENST00000610726 CDK13Q14004 1512 aaKnown RBP9.48□□□□□ -0.89
CSDE1-218ENST00000610726 TIAM1Q13009 1591 aa9.48□□□□□ -0.89
CSDE1-218ENST00000610726 PAK3O75914 559 aaPredicted RBP9.48□□□□□ -0.89
CSDE1-218ENST00000610726 PPP4R2Q9NY27 417 aa9.48□□□□□ -0.89
CSDE1-218ENST00000610726 VGFO15240 615 aaPredicted RBP9.48□□□□□ -0.89
CSDE1-218ENST00000610726 ARHGAP5Q13017 1502 aa9.48□□□□□ -0.89
CSDE1-218ENST00000610726 NLRP13Q86W25 1043 aa9.47□□□□□ -0.89
CSDE1-218ENST00000610726 PRKRIP1Q9H875 184 aaPredicted RBP9.47□□□□□ -0.89
CSDE1-218ENST00000610726 EID1Q9Y6B2 187 aa9.47□□□□□ -0.89
CSDE1-218ENST00000610726 ARXQ96QS3 562 aa9.46□□□□□ -0.89
CSDE1-218ENST00000610726 RGS3P49796 1198 aa9.46□□□□□ -0.9
CSDE1-218ENST00000610726 EPRSP07814 1512 aaKnown RBP9.46□□□□□ -0.9
CSDE1-218ENST00000610726 PLB1Q6P1J6 1458 aa9.46□□□□□ -0.9
CSDE1-218ENST00000610726 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.45□□□□□ -0.9
CSDE1-218ENST00000610726 CCDC146Q8IYE0 955 aa9.45□□□□□ -0.9
CSDE1-218ENST00000610726 TERF2IPQ9NYB0 399 aa9.45□□□□□ -0.9
CSDE1-218ENST00000610726 IQGAP2Q13576 1575 aa9.45□□□□□ -0.9
CSDE1-218ENST00000610726 MIA2Q96PC5 1412 aa9.45□□□□□ -0.9
CSDE1-218ENST00000610726 RAPGEF3O95398 923 aa9.45□□□□□ -0.9
CSDE1-218ENST00000610726 EHBP1L1Q8N3D4 1523 aa9.44□□□□□ -0.9
CSDE1-218ENST00000610726 MINK1Q8N4C8 1332 aaPredicted RBP9.44□□□□□ -0.9
CSDE1-218ENST00000610726 GRIN2AQ12879 1464 aa9.44□□□□□ -0.9
CSDE1-218ENST00000610726 PNNQ9H307 717 aaKnown RBP9.44□□□□□ -0.9
CSDE1-218ENST00000610726 SCAPERQ9BY12 1400 aa9.44□□□□□ -0.9
CSDE1-218ENST00000610726 C9orf84Q5VXU9 1444 aa9.43□□□□□ -0.9
CSDE1-218ENST00000610726 NBR1Q14596 966 aa9.43□□□□□ -0.9
CSDE1-218ENST00000610726 TMEM132EQ6IEE7 984 aa9.43□□□□□ -0.9
CSDE1-218ENST00000610726 HFM1A2PYH4 1435 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms