RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 RAB3GAP2Q9H2M9 1393 aa26.26■■□□□ 1.79
SHKBP1-224ENST00000600718 TTC37Q6PGP7 1564 aa26.25■■□□□ 1.79
SHKBP1-224ENST00000600718 DAPK1P53355 1430 aa26.25■■□□□ 1.79
SHKBP1-224ENST00000600718 DNMT1P26358 1616 aaKnown RBP26.24■■□□□ 1.79
SHKBP1-224ENST00000600718 PREX2Q70Z35 1606 aa26.24■■□□□ 1.79
SHKBP1-224ENST00000600718 ASXL2Q76L83 1435 aa26.24■■□□□ 1.79
SHKBP1-224ENST00000600718 ABCC5O15440 1437 aa26.23■■□□□ 1.79
SHKBP1-224ENST00000600718 HFM1A2PYH4 1435 aa26.22■■□□□ 1.79
SHKBP1-224ENST00000600718 CYB5RLQ6IPT4 315 aa26.21■■□□□ 1.79
SHKBP1-224ENST00000600718 CDC42BPBQ9Y5S2 1711 aa26.2■■□□□ 1.78
SHKBP1-224ENST00000600718 AKNAQ7Z591 1439 aa26.19■■□□□ 1.78
SHKBP1-224ENST00000600718 PLCH2O75038 1416 aa26.19■■□□□ 1.78
SHKBP1-224ENST00000600718 CHIC2Q9UKJ5 165 aa26.18■■□□□ 1.78
SHKBP1-224ENST00000600718 MYO5CQ9NQX4 1742 aa26.18■■□□□ 1.78
SHKBP1-224ENST00000600718 ROCK1Q13464 1354 aa26.17■■□□□ 1.78
SHKBP1-224ENST00000600718 ARHGAP5Q13017 1502 aa26.17■■□□□ 1.78
SHKBP1-224ENST00000600718 NAIPQ13075 1403 aa26.17■■□□□ 1.78
SHKBP1-224ENST00000600718 DHX57Q6P158 1386 aaKnown RBP26.15■■□□□ 1.78
SHKBP1-224ENST00000600718 RSPH4AQ5TD94 716 aa26.13■■□□□ 1.77
SHKBP1-224ENST00000600718 SAMD9LQ8IVG5 1584 aa26.13■■□□□ 1.77
SHKBP1-224ENST00000600718 EFCAB2Q5VUJ9 269 aa26.13■■□□□ 1.77
SHKBP1-224ENST00000600718 RRP7BPQ9NSQ0 103 aa26.13■■□□□ 1.77
SHKBP1-224ENST00000600718 ARAP3Q8WWN8 1544 aa26.11■■□□□ 1.77
SHKBP1-224ENST00000600718 ABCA9Q8IUA7 1624 aa26.11■■□□□ 1.77
SHKBP1-224ENST00000600718 PLEKHH2Q8IVE3 1493 aa26.11■■□□□ 1.77
SHKBP1-224ENST00000600718 CLSPNQ9HAW4 1339 aa26.11■■□□□ 1.77
SHKBP1-224ENST00000600718 ARHGEF5Q12774 1597 aa26.1■■□□□ 1.77
SHKBP1-224ENST00000600718 HNRNPMP52272 730 aaKnown RBP eCLIP26.09■■□□□ 1.77
SHKBP1-224ENST00000600718 MBD5Q9P267 1494 aa26.09■■□□□ 1.77
SHKBP1-224ENST00000600718 KIAA1107Q9UPP5 1409 aa26.09■■□□□ 1.77
SHKBP1-224ENST00000600718 SHANK2Q9UPX8 1470 aa26.07■■□□□ 1.76
SHKBP1-224ENST00000600718 CROCC2H7BZ55 1655 aa26.07■■□□□ 1.76
SHKBP1-224ENST00000600718 GCC2Q8IWJ2 1684 aa26.07■■□□□ 1.76
SHKBP1-224ENST00000600718 TSPY4P0CV99 314 aa26.07■■□□□ 1.76
SHKBP1-224ENST00000600718 TSPY10P0CW01 314 aa26.07■■□□□ 1.76
SHKBP1-224ENST00000600718 ADGRL2O95490 1459 aa26.06■■□□□ 1.76
SHKBP1-224ENST00000600718 MAPKBP1O60336 1514 aa26.05■■□□□ 1.76
SHKBP1-224ENST00000600718 NCOA1Q15788 1441 aa26.04■■□□□ 1.76
SHKBP1-224ENST00000600718 ACIN1Q9UKV3 1341 aaKnown RBP26.03■■□□□ 1.76
SHKBP1-224ENST00000600718 CCDC141Q6ZP82 1450 aa26.03■■□□□ 1.76
SHKBP1-224ENST00000600718 ANKRD30AQ9BXX3 1397 aa26.03■■□□□ 1.76
SHKBP1-224ENST00000600718 ADGBQ8N7X0 1667 aa26.02■■□□□ 1.76
SHKBP1-224ENST00000600718 C9orf84Q5VXU9 1444 aa26.01■■□□□ 1.75
SHKBP1-224ENST00000600718 SYCP2Q9BX26 1530 aa26.01■■□□□ 1.75
SHKBP1-224ENST00000600718 ABCC1P33527 1531 aa25.96■■□□□ 1.75
SHKBP1-224ENST00000600718 FANCAO15360 1455 aa25.96■■□□□ 1.75
SHKBP1-224ENST00000600718 ARHGEF12Q9NZN5 1544 aa25.95■■□□□ 1.74
SHKBP1-224ENST00000600718 CD109Q6YHK3 1445 aa25.95■■□□□ 1.74
SHKBP1-224ENST00000600718 MAST1Q9Y2H9 1570 aa25.93■■□□□ 1.74
SHKBP1-224ENST00000600718 KDM6BO15054 1643 aa25.92■■□□□ 1.74
SHKBP1-224ENST00000600718 TRIM52Q96A61 297 aa25.88■■□□□ 1.73
SHKBP1-224ENST00000600718 TRAPPC8Q9Y2L5 1435 aa25.87■■□□□ 1.73
SHKBP1-224ENST00000600718 GLI2P10070 1586 aa25.87■■□□□ 1.73
SHKBP1-224ENST00000600718 ANKRD50Q9ULJ7 1429 aa25.87■■□□□ 1.73
SHKBP1-224ENST00000600718 KIF15Q9NS87 1388 aa25.86■■□□□ 1.73
SHKBP1-224ENST00000600718 CFAP74Q9C0B2 1584 aa25.85■■□□□ 1.73
SHKBP1-224ENST00000600718 ADGRL1O94910 1474 aa25.84■■□□□ 1.73
SHKBP1-224ENST00000600718 SCAPERQ9BY12 1400 aa25.84■■□□□ 1.73
SHKBP1-224ENST00000600718 RTEL1-TNFRSF6BF6WH68 1400 aa25.81■■□□□ 1.72
SHKBP1-224ENST00000600718 PLXNC1O60486 1568 aa25.81■■□□□ 1.72
SHKBP1-224ENST00000600718 AFAP1Q8N556 730 aa25.8■■□□□ 1.72
SHKBP1-224ENST00000600718 SPAG9O60271 1321 aaKnown RBP25.8■■□□□ 1.72
SHKBP1-224ENST00000600718 MAP3K4Q9Y6R4 1608 aa25.79■■□□□ 1.72
SHKBP1-224ENST00000600718 MPHOSPH9Q99550 1183 aa25.78■■□□□ 1.72
SHKBP1-224ENST00000600718 NEO1Q92859 1461 aa25.78■■□□□ 1.72
SHKBP1-224ENST00000600718 FAM69CQ0P6D2 419 aa25.78■■□□□ 1.72
SHKBP1-224ENST00000600718 DIP2BQ9P265 1576 aa25.76■■□□□ 1.71
SHKBP1-224ENST00000600718 DUOX2Q9NRD8 1548 aa25.73■■□□□ 1.71
SHKBP1-224ENST00000600718 ZNF518AQ6AHZ1 1483 aa25.71■■□□□ 1.71
SHKBP1-224ENST00000600718 DENND4BO75064 1496 aaPredicted RBP25.7■■□□□ 1.71
SHKBP1-224ENST00000600718 ZFYVE16Q7Z3T8 1539 aa25.7■■□□□ 1.71
SHKBP1-224ENST00000600718 SLC4A1APQ9BWU0 796 aaKnown RBP25.7■■□□□ 1.7
SHKBP1-224ENST00000600718 SIN3AQ96ST3 1273 aa25.69■■□□□ 1.7
SHKBP1-224ENST00000600718 PZPP20742 1482 aa25.68■■□□□ 1.7
SHKBP1-224ENST00000600718 ERBINQ96RT1 1412 aa25.68■■□□□ 1.7
SHKBP1-224ENST00000600718 INO80Q9ULG1 1556 aaPredicted RBP25.68■■□□□ 1.7
SHKBP1-224ENST00000600718 ATP7AQ04656 1500 aa25.68■■□□□ 1.7
SHKBP1-224ENST00000600718 POGZQ7Z3K3 1410 aa25.68■■□□□ 1.7
SHKBP1-224ENST00000600718 TIMELESSQ9UNS1 1208 aa25.67■■□□□ 1.7
SHKBP1-224ENST00000600718 NUP155O75694 1391 aa25.66■■□□□ 1.7
SHKBP1-224ENST00000600718 NEUROD1Q13562 356 aa25.65■■□□□ 1.7
SHKBP1-224ENST00000600718 KDM5DQ9BY66 1539 aa25.65■■□□□ 1.7
SHKBP1-224ENST00000600718 MYT1LQ9UL68 1186 aa25.64■■□□□ 1.7
SHKBP1-224ENST00000600718 KDM5CP41229 1560 aa25.62■■□□□ 1.69
SHKBP1-224ENST00000600718 TEX14Q8IWB6 1497 aa25.6■■□□□ 1.69
SHKBP1-224ENST00000600718 MLH3Q9UHC1 1453 aa25.6■■□□□ 1.69
SHKBP1-224ENST00000600718 UNC13BO14795 1591 aa25.59■■□□□ 1.69
SHKBP1-224ENST00000600718 ANKRD30BQ9BXX2 1392 aa25.58■■□□□ 1.69
SHKBP1-224ENST00000600718 KIDINS220Q9ULH0 1771 aa25.57■■□□□ 1.68
SHKBP1-224ENST00000600718 DHX29Q7Z478 1369 aaKnown RBP25.57■■□□□ 1.68
SHKBP1-224ENST00000600718 FOXD1Q16676 465 aa25.57■■□□□ 1.68
SHKBP1-224ENST00000600718 PKD2Q13563 968 aa25.56■■□□□ 1.68
SHKBP1-224ENST00000600718 RAPGEF3O95398 923 aa25.56■■□□□ 1.68
SHKBP1-224ENST00000600718 PPRC1Q5VV67 1664 aaKnown RBP25.54■■□□□ 1.68
SHKBP1-224ENST00000600718 KIF13AQ9H1H9 1805 aa25.54■■□□□ 1.68
SHKBP1-224ENST00000600718 HECW2Q9P2P5 1572 aa25.53■■□□□ 1.68
SHKBP1-224ENST00000600718 MAGI2Q86UL8 1455 aa25.52■■□□□ 1.68
SHKBP1-224ENST00000600718 FAM135AQ9P2D6 1515 aa25.52■■□□□ 1.68
SHKBP1-224ENST00000600718 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.52■■□□□ 1.68
SHKBP1-224ENST00000600718 DNAJC5Q9H3Z4 198 aa25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms