RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 NISCHQ9Y2I1 1504 aa40.2■■■■■ 4.03
SHKBP1-224ENST00000600718 CCDC180Q9P1Z9 1646 aa35.09■■■■□ 3.21
SHKBP1-224ENST00000600718 ZCCHC6Q5VYS8 1495 aaKnown RBP33.73■■■□□ 2.99
SHKBP1-224ENST00000600718 DCAF1Q9Y4B6 1507 aa33.27■■■□□ 2.92
SHKBP1-224ENST00000600718 ABCC9O60706 1549 aa33.27■■■□□ 2.92
SHKBP1-224ENST00000600718 DCAF8L2P0C7V8 631 aa33.24■■■□□ 2.91
SHKBP1-224ENST00000600718 MYO15BQ96JP2 1530 aa32.94■■■□□ 2.86
SHKBP1-224ENST00000600718 NACADO15069 1562 aa32.75■■■□□ 2.83
SHKBP1-224ENST00000600718 SHROOM4Q9ULL8 1493 aa32.65■■■□□ 2.82
SHKBP1-224ENST00000600718 RB1CC1Q8TDY2 1594 aa32.48■■■□□ 2.79
SHKBP1-224ENST00000600718 SCRIBQ14160 1630 aa32.21■■■□□ 2.75
SHKBP1-224ENST00000600718 UNC13AQ9UPW8 1703 aa31.72■■■□□ 2.67
SHKBP1-224ENST00000600718 BICRAQ9NZM4 1560 aa31.46■■■□□ 2.63
SHKBP1-224ENST00000600718 SUPT5HO00267 1087 aaKnown RBP31.41■■■□□ 2.62
SHKBP1-224ENST00000600718 PABPN1Q86U42 306 aaKnown RBP eCLIP31.37■■■□□ 2.61
SHKBP1-224ENST00000600718 CECR2Q9BXF3 1484 aa31.22■■■□□ 2.59
SHKBP1-224ENST00000600718 RSF1Q96T23 1441 aaPredicted RBP31.15■■■□□ 2.58
SHKBP1-224ENST00000600718 BAZ1AQ9NRL2 1556 aaPredicted RBP31.05■■■□□ 2.56
SHKBP1-224ENST00000600718 MROH2BQ7Z745 1585 aa31.03■■■□□ 2.56
SHKBP1-224ENST00000600718 SMARCA4P51532 1647 aa30.9■■■□□ 2.54
SHKBP1-224ENST00000600718 WIZO95785 1651 aa30.74■■■□□ 2.51
SHKBP1-224ENST00000600718 PEG3Q9GZU2 1588 aa30.56■■■□□ 2.48
SHKBP1-224ENST00000600718 EIF4G1Q04637 1599 aaKnown RBP30.53■■■□□ 2.48
SHKBP1-224ENST00000600718 TOP2AP11388 1531 aaKnown RBP30.46■■■□□ 2.47
SHKBP1-224ENST00000600718 ATAD2BQ9ULI0 1458 aa30.45■■■□□ 2.47
SHKBP1-224ENST00000600718 SMARCA2P51531 1590 aa30.44■■■□□ 2.46
SHKBP1-224ENST00000600718 BAZ1BQ9UIG0 1483 aaKnown RBP30.27■■■□□ 2.44
SHKBP1-224ENST00000600718 NCAPD3P42695 1498 aa30.24■■■□□ 2.43
SHKBP1-224ENST00000600718 CCDC88BA6NC98 1476 aa30.16■■■□□ 2.42
SHKBP1-224ENST00000600718 HMGXB3Q12766 1538 aa30.16■■■□□ 2.42
SHKBP1-224ENST00000600718 CC2D2AQ9P2K1 1620 aa30.1■■■□□ 2.41
SHKBP1-224ENST00000600718 CHIC1Q5VXU3 224 aa30.03■■■□□ 2.4
SHKBP1-224ENST00000600718 TRIM41Q8WV44 630 aa29.58■■■□□ 2.33
SHKBP1-224ENST00000600718 CFTRP13569 1480 aa29.52■■■□□ 2.32
SHKBP1-224ENST00000600718 CADPSQ9ULU8 1353 aa29.46■■■□□ 2.31
SHKBP1-224ENST00000600718 DNAJC5BQ9UF47 199 aa29.45■■■□□ 2.31
SHKBP1-224ENST00000600718 ABCC8Q09428 1581 aa29.42■■■□□ 2.3
SHKBP1-224ENST00000600718 WRNQ14191 1432 aaPredicted RBP eCLIP29.32■■■□□ 2.28
SHKBP1-224ENST00000600718 PRDM2Q13029 1718 aa29.28■■■□□ 2.28
SHKBP1-224ENST00000600718 LAMC3Q9Y6N6 1575 aa29.2■■■□□ 2.27
SHKBP1-224ENST00000600718 NESP48681 1621 aa29.16■■■□□ 2.26
SHKBP1-224ENST00000600718 SYNJ1O43426 1573 aa29.15■■■□□ 2.26
SHKBP1-224ENST00000600718 FANCD2Q9BXW9 1451 aa29.1■■■□□ 2.25
SHKBP1-224ENST00000600718 TOP2BQ02880 1626 aa29.07■■■□□ 2.24
SHKBP1-224ENST00000600718 BIVM-ERCC5R4GMW8 1640 aa29.04■■■□□ 2.24
SHKBP1-224ENST00000600718 PDS5BQ9NTI5 1447 aa29.02■■■□□ 2.24
SHKBP1-224ENST00000600718 CUX1P39880 1505 aa29.02■■■□□ 2.24
SHKBP1-224ENST00000600718 FAM9AQ8IZU1 332 aaPredicted RBP28.98■■■□□ 2.23
SHKBP1-224ENST00000600718 CEP164Q9UPV0 1460 aa28.93■■■□□ 2.22
SHKBP1-224ENST00000600718 SOGA1O94964 1423 aa28.89■■■□□ 2.22
SHKBP1-224ENST00000600718 EEA1Q15075 1411 aa28.89■■■□□ 2.22
SHKBP1-224ENST00000600718 LOC105371045A0A1W2PR82 267 aa28.85■■■□□ 2.21
SHKBP1-224ENST00000600718 DNMBPQ6XZF7 1577 aa28.81■■■□□ 2.2
SHKBP1-224ENST00000600718 KIF21AQ7Z4S6 1674 aa28.78■■■□□ 2.2
SHKBP1-224ENST00000600718 RUSC2Q8N2Y8 1516 aa28.77■■■□□ 2.2
SHKBP1-224ENST00000600718 TOPBP1Q92547 1522 aa28.76■■■□□ 2.19
SHKBP1-224ENST00000600718 CSRNP3Q8WYN3 585 aa28.74■■■□□ 2.19
SHKBP1-224ENST00000600718 FGD5Q6ZNL6 1462 aa28.73■■■□□ 2.19
SHKBP1-224ENST00000600718 URB2Q14146 1524 aaKnown RBP28.72■■■□□ 2.19
SHKBP1-224ENST00000600718 MRC2Q9UBG0 1479 aa28.62■■■□□ 2.17
SHKBP1-224ENST00000600718 POLA1P09884 1462 aaPredicted RBP28.61■■■□□ 2.17
SHKBP1-224ENST00000600718 KIF27Q86VH2 1401 aa28.61■■■□□ 2.17
SHKBP1-224ENST00000600718 ERCC6Q03468 1493 aa28.56■■■□□ 2.16
SHKBP1-224ENST00000600718 CUX2O14529 1486 aa28.53■■■□□ 2.16
SHKBP1-224ENST00000600718 EHMT2Q96KQ7 1210 aa28.53■■■□□ 2.16
SHKBP1-224ENST00000600718 RAD54L2Q9Y4B4 1467 aa28.5■■■□□ 2.15
SHKBP1-224ENST00000600718 ABCA10Q8WWZ4 1543 aa28.5■■■□□ 2.15
SHKBP1-224ENST00000600718 WDR62O43379 1518 aa28.46■■■□□ 2.15
SHKBP1-224ENST00000600718 KIF21BO75037 1637 aa28.45■■■□□ 2.15
SHKBP1-224ENST00000600718 GOLGA3Q08378 1498 aa28.44■■■□□ 2.14
SHKBP1-224ENST00000600718 PRXQ9BXM0 1461 aa28.38■■■□□ 2.13
SHKBP1-224ENST00000600718 IGF1RP08069 1367 aa28.37■■■□□ 2.13
SHKBP1-224ENST00000600718 TNIKQ9UKE5 1360 aa28.36■■■□□ 2.13
SHKBP1-224ENST00000600718 THOC2Q8NI27 1593 aaKnown RBP28.36■■■□□ 2.13
SHKBP1-224ENST00000600718 WDR97A6NE52 1622 aa28.35■■■□□ 2.13
SHKBP1-224ENST00000600718 UBTFP17480 764 aaKnown RBP28.34■■■□□ 2.13
SHKBP1-224ENST00000600718 TARBP1Q13395 1621 aaKnown RBP28.33■■■□□ 2.13
SHKBP1-224ENST00000600718 ERICH3Q5RHP9 1530 aa28.3■■■□□ 2.12
SHKBP1-224ENST00000600718 RAPGEF2Q9Y4G8 1499 aa28.3■■■□□ 2.12
SHKBP1-224ENST00000600718 IFT140Q96RY7 1462 aa28.27■■■□□ 2.12
SHKBP1-224ENST00000600718 TDRD9Q8NDG6 1382 aaKnown RBP28.26■■■□□ 2.11
SHKBP1-224ENST00000600718 ABCA5Q8WWZ7 1642 aa28.23■■■□□ 2.11
SHKBP1-224ENST00000600718 CARMIL1Q5VZK9 1371 aa28.23■■■□□ 2.11
SHKBP1-224ENST00000600718 GAPVD1Q14C86 1478 aa28.23■■■□□ 2.11
SHKBP1-224ENST00000600718 CEP162Q5TB80 1403 aa28.15■■■□□ 2.1
SHKBP1-224ENST00000600718 CUL7Q14999 1698 aa28.13■■■□□ 2.09
SHKBP1-224ENST00000600718 AQRO60306 1485 aaKnown RBP eCLIP28.09■■■□□ 2.091e-9■■■■□ 22.4
SHKBP1-224ENST00000600718 ZNF608Q9ULD9 1512 aaPredicted RBP28.06■■■□□ 2.08
SHKBP1-224ENST00000600718 GRIN2BQ13224 1484 aa28.04■■■□□ 2.08
SHKBP1-224ENST00000600718 PBRM1Q86U86 1689 aa28.01■■■□□ 2.07
SHKBP1-224ENST00000600718 CLIP1P30622 1438 aa27.98■■■□□ 2.07
SHKBP1-224ENST00000600718 EIF4G3O43432 1585 aaKnown RBP27.94■■■□□ 2.06
SHKBP1-224ENST00000600718 FHAD1B1AJZ9 1412 aa27.94■■■□□ 2.06
SHKBP1-224ENST00000600718 ADAMTS12P58397 1594 aa27.87■■■□□ 2.05
SHKBP1-224ENST00000600718 RANGAP1P46060 587 aaPredicted RBP27.85■■■□□ 2.05
SHKBP1-224ENST00000600718 SNAPC4Q5SXM2 1469 aa27.82■■■□□ 2.04
SHKBP1-224ENST00000600718 MAGI1Q96QZ7 1491 aaPredicted RBP27.81■■■□□ 2.04
SHKBP1-224ENST00000600718 CTTNBP2Q8WZ74 1663 aa27.75■■■□□ 2.03
SHKBP1-224ENST00000600718 ARHGAP35Q9NRY4 1499 aa27.72■■■□□ 2.03
SHKBP1-224ENST00000600718 VPS8Q8N3P4 1428 aa27.71■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms