RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 PCF11O94913 1555 aaKnown RBP28.84■■■□□ 2.21
SHKBP1-203ENST00000594298 EFCAB2Q5VUJ9 269 aa28.84■■■□□ 2.21
SHKBP1-203ENST00000594298 TROQ12816 1431 aaPredicted RBP28.83■■■□□ 2.21
SHKBP1-203ENST00000594298 LMTK3Q96Q04 1460 aa28.83■■■□□ 2.21
SHKBP1-203ENST00000594298 RIMS1Q86UR5 1692 aaKnown RBP28.81■■■□□ 2.2
SHKBP1-203ENST00000594298 KIF14Q15058 1648 aa28.8■■■□□ 2.2
SHKBP1-203ENST00000594298 SIGLEC1Q9BZZ2 1709 aa28.79■■■□□ 2.2
SHKBP1-203ENST00000594298 MYO5CQ9NQX4 1742 aa28.79■■■□□ 2.2
SHKBP1-203ENST00000594298 CLIP1P30622 1438 aa28.77■■■□□ 2.2
SHKBP1-203ENST00000594298 ATP10AO60312 1499 aa28.75■■■□□ 2.19
SHKBP1-203ENST00000594298 C9orf84Q5VXU9 1444 aa28.73■■■□□ 2.19
SHKBP1-203ENST00000594298 ZNF518AQ6AHZ1 1483 aa28.72■■■□□ 2.19
SHKBP1-203ENST00000594298 ARHGAP5Q13017 1502 aa28.71■■■□□ 2.19
SHKBP1-203ENST00000594298 CASKIN1Q8WXD9 1431 aa28.69■■■□□ 2.18
SHKBP1-203ENST00000594298 MLECQ14165 292 aa28.69■■■□□ 2.18
SHKBP1-203ENST00000594298 LRRIQ1Q96JM4 1722 aa28.69■■■□□ 2.18
SHKBP1-203ENST00000594298 KDM5CP41229 1560 aa28.68■■■□□ 2.18
SHKBP1-203ENST00000594298 ARHGEF12Q9NZN5 1544 aa28.68■■■□□ 2.18
SHKBP1-203ENST00000594298 CCDC18Q5T9S5 1454 aa28.67■■■□□ 2.18
SHKBP1-203ENST00000594298 FBXO41Q8TF61 875 aa28.67■■■□□ 2.18
SHKBP1-203ENST00000594298 AFAP1Q8N556 730 aa28.65■■■□□ 2.18
SHKBP1-203ENST00000594298 FER1L4A9Z1Z3 1794 aa28.63■■■□□ 2.17
SHKBP1-203ENST00000594298 PLPPR3Q6T4P5 718 aa28.62■■■□□ 2.17
SHKBP1-203ENST00000594298 HSPA2P54652 639 aa28.61■■■□□ 2.17
SHKBP1-203ENST00000594298 MLH3Q9UHC1 1453 aa28.59■■■□□ 2.17
SHKBP1-203ENST00000594298 CDC42BPBQ9Y5S2 1711 aa28.58■■■□□ 2.17
SHKBP1-203ENST00000594298 FYCO1Q9BQS8 1478 aa28.57■■■□□ 2.16
SHKBP1-203ENST00000594298 REREQ9P2R6 1566 aa28.57■■■□□ 2.16
SHKBP1-203ENST00000594298 PREX2Q70Z35 1606 aa28.57■■■□□ 2.16
SHKBP1-203ENST00000594298 DIP2CQ9Y2E4 1556 aa28.55■■■□□ 2.16
SHKBP1-203ENST00000594298 ABCC1P33527 1531 aa28.55■■■□□ 2.16
SHKBP1-203ENST00000594298 MYT1LQ9UL68 1186 aa28.53■■■□□ 2.16
SHKBP1-203ENST00000594298 TRAPPC8Q9Y2L5 1435 aa28.52■■■□□ 2.16
SHKBP1-203ENST00000594298 ABCA6Q8N139 1617 aa28.49■■■□□ 2.15
SHKBP1-203ENST00000594298 AGLP35573 1532 aa28.48■■■□□ 2.15
SHKBP1-203ENST00000594298 CEBPAP49715 358 aaPredicted RBP28.48■■■□□ 2.15
SHKBP1-203ENST00000594298 ITSN2Q9NZM3 1697 aa28.46■■■□□ 2.15
SHKBP1-203ENST00000594298 PREX1Q8TCU6 1659 aa28.45■■■□□ 2.14
SHKBP1-203ENST00000594298 CDC42BPAQ5VT25 1732 aa28.43■■■□□ 2.14
SHKBP1-203ENST00000594298 GPATCH8Q9UKJ3 1502 aaKnown RBP28.41■■■□□ 2.14
SHKBP1-203ENST00000594298 KIDINS220Q9ULH0 1771 aa28.39■■■□□ 2.13
SHKBP1-203ENST00000594298 UHRF1BP1Q6BDS2 1440 aa28.38■■■□□ 2.13
SHKBP1-203ENST00000594298 SAMD9LQ8IVG5 1584 aa28.37■■■□□ 2.13
SHKBP1-203ENST00000594298 ZNF777Q9ULD5 760 aaPredicted RBP28.35■■■□□ 2.13
SHKBP1-203ENST00000594298 CERKQ8TCT0 537 aa28.34■■■□□ 2.13
SHKBP1-203ENST00000594298 ESF1Q9H501 851 aaKnown RBP28.34■■■□□ 2.13
SHKBP1-203ENST00000594298 KIAA1107Q9UPP5 1409 aa28.34■■■□□ 2.13
SHKBP1-203ENST00000594298 SYCP2Q9BX26 1530 aa28.33■■■□□ 2.13
SHKBP1-203ENST00000594298 CNTLNQ9NXG0 1405 aa28.33■■■□□ 2.13
SHKBP1-203ENST00000594298 DMRT2Q9Y5R5 561 aa28.31■■■□□ 2.12
SHKBP1-203ENST00000594298 SPAG9O60271 1321 aaKnown RBP28.31■■■□□ 2.12
SHKBP1-203ENST00000594298 PLEKHH2Q8IVE3 1493 aa28.31■■■□□ 2.12
SHKBP1-203ENST00000594298 C3P01024 1663 aa28.31■■■□□ 2.12
SHKBP1-203ENST00000594298 CFDP1Q9UEE9 299 aaPredicted RBP28.3■■■□□ 2.12
SHKBP1-203ENST00000594298 SETD1BQ9UPS6 1966 aaKnown RBP28.3■■■□□ 2.12
SHKBP1-203ENST00000594298 CCNB3Q8WWL7 1395 aa28.29■■■□□ 2.12
SHKBP1-203ENST00000594298 HNRNPMP52272 730 aaKnown RBP eCLIP28.29■■■□□ 2.12
SHKBP1-203ENST00000594298 MTUS2Q5JR59 1369 aa28.27■■■□□ 2.12
SHKBP1-203ENST00000594298 STRCQ7RTU9 1775 aa28.26■■■□□ 2.11
SHKBP1-203ENST00000594298 ATP7AQ04656 1500 aa28.24■■■□□ 2.11
SHKBP1-203ENST00000594298 INO80Q9ULG1 1556 aaPredicted RBP28.22■■■□□ 2.11
SHKBP1-203ENST00000594298 PLXNC1O60486 1568 aa28.2■■■□□ 2.11
SHKBP1-203ENST00000594298 PTPRTO14522 1441 aa28.2■■■□□ 2.11
SHKBP1-203ENST00000594298 NPATQ14207 1427 aa28.2■■■□□ 2.11
SHKBP1-203ENST00000594298 A2MP01023 1474 aa28.19■■■□□ 2.1
SHKBP1-203ENST00000594298 MROH2AA6NES4 1674 aa28.19■■■□□ 2.1
SHKBP1-203ENST00000594298 ZMYM3Q14202 1370 aa28.18■■■□□ 2.1
SHKBP1-203ENST00000594298 EHBP1L1Q8N3D4 1523 aa28.18■■■□□ 2.1
SHKBP1-203ENST00000594298 TIAM1Q13009 1591 aa28.16■■■□□ 2.1
SHKBP1-203ENST00000594298 CEP162Q5TB80 1403 aa28.15■■■□□ 2.1
SHKBP1-203ENST00000594298 MBD5Q9P267 1494 aa28.14■■■□□ 2.09
SHKBP1-203ENST00000594298 SUPT6HQ7KZ85 1726 aaKnown RBP28.13■■■□□ 2.09
SHKBP1-203ENST00000594298 NCOA1Q15788 1441 aa28.13■■■□□ 2.09
SHKBP1-203ENST00000594298 ZNF644Q9H582 1327 aaPredicted RBP28.12■■■□□ 2.09
SHKBP1-203ENST00000594298 PPP6R1Q9UPN7 881 aa28.1■■■□□ 2.09
SHKBP1-203ENST00000594298 RTEL1-TNFRSF6BF6WH68 1400 aa28.09■■■□□ 2.09
SHKBP1-203ENST00000594298 GGT6Q6P531 493 aa28.06■■■□□ 2.08
SHKBP1-203ENST00000594298 ADGBQ8N7X0 1667 aa28.06■■■□□ 2.08
SHKBP1-203ENST00000594298 CLTCQ00610 1675 aaKnown RBP28.05■■■□□ 2.08
SHKBP1-203ENST00000594298 PTPRKQ15262 1439 aa28.04■■■□□ 2.08
SHKBP1-203ENST00000594298 CAMSAP1Q5T5Y3 1602 aa28.03■■■□□ 2.08
SHKBP1-203ENST00000594298 DHX29Q7Z478 1369 aaKnown RBP28.01■■■□□ 2.07
SHKBP1-203ENST00000594298 LTBP4Q8N2S1 1624 aa28.01■■■□□ 2.07
SHKBP1-203ENST00000594298 NCOA2Q15596 1464 aa28.01■■■□□ 2.07
SHKBP1-203ENST00000594298 RSPH4AQ5TD94 716 aa27.99■■■□□ 2.07
SHKBP1-203ENST00000594298 MYO3AQ8NEV4 1616 aa27.98■■■□□ 2.07
SHKBP1-203ENST00000594298 ZNF142P52746 1687 aaPredicted RBP27.97■■■□□ 2.07
SHKBP1-203ENST00000594298 PLA2R1Q13018 1463 aa27.97■■■□□ 2.07
SHKBP1-203ENST00000594298 CCDC141Q6ZP82 1450 aa27.97■■■□□ 2.07
SHKBP1-203ENST00000594298 IQSEC2Q5JU85 1478 aa27.96■■■□□ 2.07
SHKBP1-203ENST00000594298 CAMSAP2Q08AD1 1489 aa27.95■■■□□ 2.07
SHKBP1-203ENST00000594298 CEP170BQ9Y4F5 1589 aaPredicted RBP27.94■■■□□ 2.06
SHKBP1-203ENST00000594298 PKD2Q13563 968 aa27.94■■■□□ 2.06
SHKBP1-203ENST00000594298 NCKAP5LQ9HCH0 1330 aa27.93■■■□□ 2.06
SHKBP1-203ENST00000594298 TCOF1Q13428 1488 aaKnown RBP27.92■■■□□ 2.06
SHKBP1-203ENST00000594298 FAM135AQ9P2D6 1515 aa27.9■■■□□ 2.06
SHKBP1-203ENST00000594298 KIF3BO15066 747 aa27.89■■■□□ 2.06
SHKBP1-203ENST00000594298 VPS8Q8N3P4 1428 aa27.88■■■□□ 2.05
SHKBP1-203ENST00000594298 ARHGEF5Q12774 1597 aa27.87■■■□□ 2.05
SHKBP1-203ENST00000594298 A2ML1A8K2U0 1454 aa27.87■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms