RNA–Protein interactions for RNA: ENST00000593641.3

SSBP4-203, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-203ENST00000593641 KIF14Q15058 1648 aa37.25■■■■□ 3.55
SSBP4-203ENST00000593641 SCAPERQ9BY12 1400 aa37.24■■■■□ 3.55
SSBP4-203ENST00000593641 YEATS2Q9ULM3 1422 aa37.22■■■■□ 3.55
SSBP4-203ENST00000593641 EFCAB2Q5VUJ9 269 aa37.19■■■■□ 3.54
SSBP4-203ENST00000593641 CLIP1P30622 1438 aa37.19■■■■□ 3.54
SSBP4-203ENST00000593641 TROQ12816 1431 aaPredicted RBP37.19■■■■□ 3.54
SSBP4-203ENST00000593641 LRRIQ1Q96JM4 1722 aa37.18■■■■□ 3.54
SSBP4-203ENST00000593641 PCF11O94913 1555 aaKnown RBP37.16■■■■□ 3.54
SSBP4-203ENST00000593641 SIGLEC1Q9BZZ2 1709 aa37.16■■■■□ 3.54
SSBP4-203ENST00000593641 ARHGAP5Q13017 1502 aa37.11■■■■□ 3.53
SSBP4-203ENST00000593641 LMTK3Q96Q04 1460 aa37.08■■■■□ 3.53
SSBP4-203ENST00000593641 FER1L4A9Z1Z3 1794 aa37.08■■■■□ 3.53
SSBP4-203ENST00000593641 CCDC18Q5T9S5 1454 aa37.05■■■■□ 3.52
SSBP4-203ENST00000593641 ZNF518AQ6AHZ1 1483 aa37.05■■■■□ 3.52
SSBP4-203ENST00000593641 MLECQ14165 292 aa37.04■■■■□ 3.52
SSBP4-203ENST00000593641 ATP10AO60312 1499 aa37.04■■■■□ 3.52
SSBP4-203ENST00000593641 C9orf84Q5VXU9 1444 aa37.03■■■■□ 3.52
SSBP4-203ENST00000593641 CASKIN1Q8WXD9 1431 aa37.03■■■■□ 3.52
SSBP4-203ENST00000593641 PLPPR3Q6T4P5 718 aa37.02■■■■□ 3.52
SSBP4-203ENST00000593641 CDC42BPBQ9Y5S2 1711 aa36.99■■■■□ 3.51
SSBP4-203ENST00000593641 KDM5CP41229 1560 aa36.98■■■■□ 3.51
SSBP4-203ENST00000593641 PREX2Q70Z35 1606 aa36.96■■■■□ 3.51
SSBP4-203ENST00000593641 ARHGEF12Q9NZN5 1544 aa36.94■■■■□ 3.5
SSBP4-203ENST00000593641 MYT1LQ9UL68 1186 aa36.93■■■■□ 3.5
SSBP4-203ENST00000593641 AFAP1Q8N556 730 aa36.92■■■■□ 3.5
SSBP4-203ENST00000593641 FYCO1Q9BQS8 1478 aa36.91■■■■□ 3.5
SSBP4-203ENST00000593641 ABCC1P33527 1531 aa36.86■■■■□ 3.49
SSBP4-203ENST00000593641 DIP2CQ9Y2E4 1556 aa36.86■■■■□ 3.49
SSBP4-203ENST00000593641 HSPA2P54652 639 aa36.85■■■■□ 3.49
SSBP4-203ENST00000593641 CDC42BPAQ5VT25 1732 aa36.84■■■■□ 3.49
SSBP4-203ENST00000593641 ITSN2Q9NZM3 1697 aa36.83■■■■□ 3.49
SSBP4-203ENST00000593641 FBXO41Q8TF61 875 aa36.82■■■■□ 3.48
SSBP4-203ENST00000593641 MLH3Q9UHC1 1453 aa36.82■■■■□ 3.48
SSBP4-203ENST00000593641 REREQ9P2R6 1566 aa36.81■■■■□ 3.48
SSBP4-203ENST00000593641 ABCA6Q8N139 1617 aa36.81■■■■□ 3.48
SSBP4-203ENST00000593641 TRAPPC8Q9Y2L5 1435 aa36.77■■■■□ 3.48
SSBP4-203ENST00000593641 PREX1Q8TCU6 1659 aa36.77■■■■□ 3.48
SSBP4-203ENST00000593641 CEBPAP49715 358 aaPredicted RBP36.69■■■■□ 3.46
SSBP4-203ENST00000593641 SETD1BQ9UPS6 1966 aaKnown RBP36.69■■■■□ 3.46
SSBP4-203ENST00000593641 KIDINS220Q9ULH0 1771 aa36.68■■■■□ 3.46
SSBP4-203ENST00000593641 AGLP35573 1532 aa36.68■■■■□ 3.46
SSBP4-203ENST00000593641 ZNF777Q9ULD5 760 aaPredicted RBP36.65■■■■□ 3.46
SSBP4-203ENST00000593641 SAMD9LQ8IVG5 1584 aa36.65■■■■□ 3.46
SSBP4-203ENST00000593641 GPATCH8Q9UKJ3 1502 aaKnown RBP36.63■■■■□ 3.45
SSBP4-203ENST00000593641 ESF1Q9H501 851 aaKnown RBP36.62■■■■□ 3.45
SSBP4-203ENST00000593641 SYCP2Q9BX26 1530 aa36.62■■■■□ 3.45
SSBP4-203ENST00000593641 C3P01024 1663 aa36.6■■■■□ 3.45
SSBP4-203ENST00000593641 UHRF1BP1Q6BDS2 1440 aa36.59■■■■□ 3.45
SSBP4-203ENST00000593641 MTUS2Q5JR59 1369 aa36.56■■■■□ 3.44
SSBP4-203ENST00000593641 CCNB3Q8WWL7 1395 aa36.54■■■■□ 3.44
SSBP4-203ENST00000593641 PLEKHH2Q8IVE3 1493 aa36.54■■■■□ 3.44
SSBP4-203ENST00000593641 CFDP1Q9UEE9 299 aaPredicted RBP36.53■■■■□ 3.44
SSBP4-203ENST00000593641 SPAG9O60271 1321 aaKnown RBP36.53■■■■□ 3.44
SSBP4-203ENST00000593641 CNTLNQ9NXG0 1405 aa36.51■■■■□ 3.43
SSBP4-203ENST00000593641 HNRNPMP52272 730 aaKnown RBP eCLIP36.5■■■■□ 3.43
SSBP4-203ENST00000593641 KIAA1107Q9UPP5 1409 aa36.5■■■■□ 3.43
SSBP4-203ENST00000593641 ATP7AQ04656 1500 aa36.48■■■■□ 3.43
SSBP4-203ENST00000593641 STRCQ7RTU9 1775 aa36.47■■■■□ 3.43
SSBP4-203ENST00000593641 SUPT6HQ7KZ85 1726 aaKnown RBP36.46■■■■□ 3.43
SSBP4-203ENST00000593641 INO80Q9ULG1 1556 aaPredicted RBP36.44■■■■□ 3.42
SSBP4-203ENST00000593641 EHBP1L1Q8N3D4 1523 aa36.44■■■■□ 3.42
SSBP4-203ENST00000593641 DMRT2Q9Y5R5 561 aa36.44■■■■□ 3.42
SSBP4-203ENST00000593641 CERKQ8TCT0 537 aa36.43■■■■□ 3.42
SSBP4-203ENST00000593641 MROH2AA6NES4 1674 aa36.42■■■■□ 3.42
SSBP4-203ENST00000593641 TIAM1Q13009 1591 aa36.4■■■■□ 3.42
SSBP4-203ENST00000593641 CEP162Q5TB80 1403 aa36.4■■■■□ 3.42
SSBP4-203ENST00000593641 PLXNC1O60486 1568 aa36.37■■■■□ 3.41
SSBP4-203ENST00000593641 A2MP01023 1474 aa36.36■■■■□ 3.41
SSBP4-203ENST00000593641 ADGBQ8N7X0 1667 aa36.32■■■■□ 3.41
SSBP4-203ENST00000593641 NPATQ14207 1427 aa36.31■■■■□ 3.4
SSBP4-203ENST00000593641 CLTCQ00610 1675 aaKnown RBP36.3■■■■□ 3.4
SSBP4-203ENST00000593641 ZMYM3Q14202 1370 aa36.28■■■■□ 3.4
SSBP4-203ENST00000593641 ZNF644Q9H582 1327 aaPredicted RBP36.27■■■■□ 3.4
SSBP4-203ENST00000593641 PTPRTO14522 1441 aa36.26■■■■□ 3.4
SSBP4-203ENST00000593641 MBD5Q9P267 1494 aa36.24■■■■□ 3.39
SSBP4-203ENST00000593641 GGT6Q6P531 493 aa36.22■■■■□ 3.39
SSBP4-203ENST00000593641 NCOA1Q15788 1441 aa36.21■■■■□ 3.39
SSBP4-203ENST00000593641 RTEL1-TNFRSF6BF6WH68 1400 aa36.18■■■■□ 3.38
SSBP4-203ENST00000593641 NCOA2Q15596 1464 aa36.18■■■■□ 3.38
SSBP4-203ENST00000593641 CAMSAP1Q5T5Y3 1602 aa36.17■■■■□ 3.38
SSBP4-203ENST00000593641 MYO3AQ8NEV4 1616 aa36.16■■■■□ 3.38
SSBP4-203ENST00000593641 PPP6R1Q9UPN7 881 aa36.15■■■■□ 3.38
SSBP4-203ENST00000593641 CCDC141Q6ZP82 1450 aa36.14■■■■□ 3.38
SSBP4-203ENST00000593641 ZNF142P52746 1687 aaPredicted RBP36.13■■■■□ 3.37
SSBP4-203ENST00000593641 CAMSAP2Q08AD1 1489 aa36.12■■■■□ 3.37
SSBP4-203ENST00000593641 PTPRKQ15262 1439 aa36.11■■■■□ 3.37
SSBP4-203ENST00000593641 DHX29Q7Z478 1369 aaKnown RBP36.09■■■■□ 3.37
SSBP4-203ENST00000593641 CEP170BQ9Y4F5 1589 aaPredicted RBP36.08■■■■□ 3.37
SSBP4-203ENST00000593641 RSPH4AQ5TD94 716 aa36.06■■■■□ 3.36
SSBP4-203ENST00000593641 VPS8Q8N3P4 1428 aa36.04■■■■□ 3.36
SSBP4-203ENST00000593641 LTBP4Q8N2S1 1624 aa36.03■■■■□ 3.36
SSBP4-203ENST00000593641 PLA2R1Q13018 1463 aa36.01■■■■□ 3.36
SSBP4-203ENST00000593641 ARHGEF5Q12774 1597 aa35.99■■■■□ 3.35
SSBP4-203ENST00000593641 KIF3BO15066 747 aa35.99■■■■□ 3.35
SSBP4-203ENST00000593641 NCKAP5LQ9HCH0 1330 aa35.98■■■■□ 3.35
SSBP4-203ENST00000593641 LRRC9Q6ZRR7 1453 aa35.98■■■■□ 3.35
SSBP4-203ENST00000593641 FAM135AQ9P2D6 1515 aa35.97■■■■□ 3.35
SSBP4-203ENST00000593641 PKD2Q13563 968 aa35.96■■■■□ 3.35
SSBP4-203ENST00000593641 IQSEC2Q5JU85 1478 aa35.96■■■■□ 3.35
SSBP4-203ENST00000593641 KDM5DQ9BY66 1539 aa35.96■■■■□ 3.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms