RNA–Protein interactions for RNA: ENST00000590215.1

MBD1-223, Transcript of methyl-CpG binding domain protein 1, human

TSL 5

Gene MBD1, Length 749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-223	ENST00000590215	PREX2	Q70Z35	1606 aa		29.45	■■■□□ 2.31
MBD1-223	ENST00000590215	CDC42BPB	Q9Y5S2	1711 aa		29.45	■■■□□ 2.3
MBD1-223	ENST00000590215	CDC42BPA	Q5VT25	1732 aa		29.43	■■■□□ 2.3
MBD1-223	ENST00000590215	CCNB3	Q8WWL7	1395 aa		29.43	■■■□□ 2.3
MBD1-223	ENST00000590215	ARHGAP5	Q13017	1502 aa		29.43	■■■□□ 2.3
MBD1-223	ENST00000590215	NCOA2	Q15596	1464 aa		29.42	■■■□□ 2.3
MBD1-223	ENST00000590215	SUPT6H	Q7KZ85	1726 aa	Known RBP	29.42	■■■□□ 2.3
MBD1-223	ENST00000590215	DENND4B	O75064	1496 aa	Predicted RBP	29.38	■■■□□ 2.29
MBD1-223	ENST00000590215	ADGRL1	O94910	1474 aa		29.38	■■■□□ 2.29
MBD1-223	ENST00000590215	RAPGEF3	O95398	923 aa		29.36	■■■□□ 2.29
MBD1-223	ENST00000590215	SCAPER	Q9BY12	1400 aa		29.36	■■■□□ 2.29
MBD1-223	ENST00000590215	CFDP1	Q9UEE9	299 aa	Predicted RBP	29.34	■■■□□ 2.29
MBD1-223	ENST00000590215	FRMPD1	Q5SYB0	1578 aa		29.34	■■■□□ 2.29
MBD1-223	ENST00000590215	POGZ	Q7Z3K3	1410 aa		29.3	■■■□□ 2.28
MBD1-223	ENST00000590215	RICTOR	Q6R327	1708 aa		29.3	■■■□□ 2.28
MBD1-223	ENST00000590215	ITSN2	Q9NZM3	1697 aa		29.3	■■■□□ 2.28
MBD1-223	ENST00000590215	ABCC1	P33527	1531 aa		29.29	■■■□□ 2.28
MBD1-223	ENST00000590215	SAMD9L	Q8IVG5	1584 aa		29.27	■■■□□ 2.28
MBD1-223	ENST00000590215	ARHGEF12	Q9NZN5	1544 aa		29.26	■■■□□ 2.27
MBD1-223	ENST00000590215	KIAA1107	Q9UPP5	1409 aa		29.26	■■■□□ 2.27
MBD1-223	ENST00000590215	ZMYM4	Q5VZL5	1548 aa		29.25	■■■□□ 2.27
MBD1-223	ENST00000590215	PLEKHH2	Q8IVE3	1493 aa		29.24	■■■□□ 2.27
MBD1-223	ENST00000590215	ZNF777	Q9ULD5	760 aa	Predicted RBP	29.24	■■■□□ 2.27
MBD1-223	ENST00000590215	ZNF518A	Q6AHZ1	1483 aa		29.23	■■■□□ 2.27
MBD1-223	ENST00000590215	MYOM3	Q5VTT5	1437 aa		29.21	■■■□□ 2.27
MBD1-223	ENST00000590215	TRAPPC8	Q9Y2L5	1435 aa		29.2	■■■□□ 2.27
MBD1-223	ENST00000590215	MAGI2	Q86UL8	1455 aa		29.2	■■■□□ 2.26
MBD1-223	ENST00000590215	KDM5C	P41229	1560 aa		29.19	■■■□□ 2.26
MBD1-223	ENST00000590215	AFAP1	Q8N556	730 aa		29.19	■■■□□ 2.26
MBD1-223	ENST00000590215	MIA2	Q96PC5	1412 aa		29.19	■■■□□ 2.26
MBD1-223	ENST00000590215	ZNF644	Q9H582	1327 aa	Predicted RBP	29.19	■■■□□ 2.26
MBD1-223	ENST00000590215	SYCP2	Q9BX26	1530 aa		29.17	■■■□□ 2.26
MBD1-223	ENST00000590215	HNRNPM	P52272	730 aa	Known RBP eCLIP	29.16	■■■□□ 2.26
MBD1-223	ENST00000590215	MBD5	Q9P267	1494 aa		29.15	■■■□□ 2.26
MBD1-223	ENST00000590215	CAMSAP2	Q08AD1	1489 aa		29.12	■■■□□ 2.25
MBD1-223	ENST00000590215	MLH3	Q9UHC1	1453 aa		29.11	■■■□□ 2.25
MBD1-223	ENST00000590215	ARHGEF40	Q8TER5	1519 aa		29.11	■■■□□ 2.25
MBD1-223	ENST00000590215	YEATS2	Q9ULM3	1422 aa		29.1	■■■□□ 2.25
MBD1-223	ENST00000590215	ZFYVE16	Q7Z3T8	1539 aa		29.1	■■■□□ 2.25
MBD1-223	ENST00000590215	RSPH4A	Q5TD94	716 aa		29.07	■■■□□ 2.24
MBD1-223	ENST00000590215	HECW2	Q9P2P5	1572 aa		29.06	■■■□□ 2.24
MBD1-223	ENST00000590215	FGD6	Q6ZV73	1430 aa		29.06	■■■□□ 2.24
MBD1-223	ENST00000590215	SPAG9	O60271	1321 aa	Known RBP	29.02	■■■□□ 2.24
MBD1-223	ENST00000590215	ARHGEF5	Q12774	1597 aa		29.02	■■■□□ 2.24
MBD1-223	ENST00000590215	CCDC141	Q6ZP82	1450 aa		29.02	■■■□□ 2.24
MBD1-223	ENST00000590215	ATP10A	O60312	1499 aa		29.01	■■■□□ 2.23
MBD1-223	ENST00000590215	TCOF1	Q13428	1488 aa	Known RBP	29.01	■■■□□ 2.23
MBD1-223	ENST00000590215	PTPN23	Q9H3S7	1636 aa		29	■■■□□ 2.23
MBD1-223	ENST00000590215	KIDINS220	Q9ULH0	1771 aa		29	■■■□□ 2.23
MBD1-223	ENST00000590215	PPARGC1B	Q86YN6	1023 aa	Known RBP	28.98	■■■□□ 2.23
MBD1-223	ENST00000590215	DIP2C	Q9Y2E4	1556 aa		28.97	■■■□□ 2.23
MBD1-223	ENST00000590215	RTEL1-TNFRSF6B	F6WH68	1400 aa		28.97	■■■□□ 2.23
MBD1-223	ENST00000590215	INO80	Q9ULG1	1556 aa	Predicted RBP	28.96	■■■□□ 2.23
MBD1-223	ENST00000590215	C9orf84	Q5VXU9	1444 aa		28.95	■■■□□ 2.23
MBD1-223	ENST00000590215	ATP7A	Q04656	1500 aa		28.95	■■■□□ 2.23
MBD1-223	ENST00000590215	MYT1L	Q9UL68	1186 aa		28.95	■■■□□ 2.22
MBD1-223	ENST00000590215	ABCA6	Q8N139	1617 aa		28.94	■■■□□ 2.22
MBD1-223	ENST00000590215	RERE	Q9P2R6	1566 aa		28.93	■■■□□ 2.22
MBD1-223	ENST00000590215	KDM4F	A0A1W2PPD8	638 aa		28.91	■■■□□ 2.22
MBD1-223	ENST00000590215	TSPY4	P0CV99	314 aa		28.9	■■■□□ 2.22
MBD1-223	ENST00000590215	TSPY10	P0CW01	314 aa		28.9	■■■□□ 2.22
MBD1-223	ENST00000590215	SIGLEC1	Q9BZZ2	1709 aa		28.89	■■■□□ 2.21
MBD1-223	ENST00000590215	ABCC5	O15440	1437 aa		28.87	■■■□□ 2.21
MBD1-223	ENST00000590215	MAST1	Q9Y2H9	1570 aa		28.87	■■■□□ 2.21
MBD1-223	ENST00000590215	ARID4B	Q4LE39	1312 aa	Predicted RBP	28.86	■■■□□ 2.21
MBD1-223	ENST00000590215	AGL	P35573	1532 aa		28.84	■■■□□ 2.21
MBD1-223	ENST00000590215	DAPK1	P53355	1430 aa		28.84	■■■□□ 2.21
MBD1-223	ENST00000590215	SHANK2	Q9UPX8	1470 aa		28.84	■■■□□ 2.21
MBD1-223	ENST00000590215	DNMT1	P26358	1616 aa	Known RBP	28.83	■■■□□ 2.21
MBD1-223	ENST00000590215	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	28.83	■■■□□ 2.21
MBD1-223	ENST00000590215	BCORL1	Q5H9F3	1711 aa		28.82	■■■□□ 2.2
MBD1-223	ENST00000590215	A2M	P01023	1474 aa		28.81	■■■□□ 2.2
MBD1-223	ENST00000590215	FAM50A	Q14320	339 aa	Known RBP	28.81	■■■□□ 2.2
MBD1-223	ENST00000590215	PLXNC1	O60486	1568 aa		28.8	■■■□□ 2.2
MBD1-223	ENST00000590215	ADAMTSL3	P82987	1691 aa		28.79	■■■□□ 2.2
MBD1-223	ENST00000590215	ADGB	Q8N7X0	1667 aa		28.79	■■■□□ 2.2
MBD1-223	ENST00000590215	RRBP1	Q9P2E9	1410 aa	Known RBP	28.78	■■■□□ 2.2
MBD1-223	ENST00000590215	CROCC2	H7BZ55	1655 aa		28.78	■■■□□ 2.2
MBD1-223	ENST00000590215	DHX29	Q7Z478	1369 aa	Known RBP	28.77	■■■□□ 2.2
MBD1-223	ENST00000590215	MLEC	Q14165	292 aa		28.69	■■■□□ 2.18
MBD1-223	ENST00000590215	ADGRL2	O95490	1459 aa		28.68	■■■□□ 2.18
MBD1-223	ENST00000590215	PTPRK	Q15262	1439 aa		28.68	■■■□□ 2.18
MBD1-223	ENST00000590215	NCOA1	Q15788	1441 aa		28.67	■■■□□ 2.18
MBD1-223	ENST00000590215	MADD	Q8WXG6	1647 aa		28.66	■■■□□ 2.18
MBD1-223	ENST00000590215	ANKRD30A	Q9BXX3	1397 aa		28.66	■■■□□ 2.18
MBD1-223	ENST00000590215	KIF15	Q9NS87	1388 aa		28.65	■■■□□ 2.18
MBD1-223	ENST00000590215	CHIC2	Q9UKJ5	165 aa		28.65	■■■□□ 2.18
MBD1-223	ENST00000590215	DUOX2	Q9NRD8	1548 aa		28.64	■■■□□ 2.18
MBD1-223	ENST00000590215	RRP7BP	Q9NSQ0	103 aa		28.62	■■■□□ 2.17
MBD1-223	ENST00000590215	AEBP2	Q6ZN18	517 aa	Predicted RBP	28.61	■■■□□ 2.17
MBD1-223	ENST00000590215	PTPRM	P28827	1452 aa		28.6	■■■□□ 2.17
MBD1-223	ENST00000590215	PPP6R1	Q9UPN7	881 aa		28.6	■■■□□ 2.17
MBD1-223	ENST00000590215	ROCK1	Q13464	1354 aa		28.6	■■■□□ 2.17
MBD1-223	ENST00000590215	KIF3B	O15066	747 aa		28.59	■■■□□ 2.17
MBD1-223	ENST00000590215	FER1L4	A9Z1Z3	1794 aa		28.58	■■■□□ 2.17
MBD1-223	ENST00000590215	ERBIN	Q96RT1	1412 aa		28.58	■■■□□ 2.17
MBD1-223	ENST00000590215	EIF2AK4	Q9P2K8	1649 aa	Known RBP	28.57	■■■□□ 2.16
MBD1-223	ENST00000590215	GGT6	Q6P531	493 aa		28.56	■■■□□ 2.16
MBD1-223	ENST00000590215	RIMS1	Q86UR5	1692 aa	Known RBP	28.56	■■■□□ 2.16
MBD1-223	ENST00000590215	CNTLN	Q9NXG0	1405 aa		28.54	■■■□□ 2.16

Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms