RNA–Protein interactions for RNA: ENST00000585448.1

SMAD4-203, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-203ENST00000585448 CADPS2Q86UW7 1296 aa11.36□□□□□ -0.59
SMAD4-203ENST00000585448 VSIG10Q8N0Z9 540 aa11.36□□□□□ -0.59
SMAD4-203ENST00000585448 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.36□□□□□ -0.59
SMAD4-203ENST00000585448 SCUBE2Q9NQ36 999 aa11.35□□□□□ -0.59
SMAD4-203ENST00000585448 GPHNQ9NQX3 736 aaPredicted RBP11.35□□□□□ -0.59
SMAD4-203ENST00000585448 PDE4AP27815 886 aa11.34□□□□□ -0.59
SMAD4-203ENST00000585448 NCKAP5LQ9HCH0 1330 aa11.34□□□□□ -0.59
SMAD4-203ENST00000585448 MFSD10Q14728 455 aa11.33□□□□□ -0.6
SMAD4-203ENST00000585448 TMEM92Q6UXU6 159 aa11.31□□□□□ -0.6
SMAD4-203ENST00000585448 FOXK1P85037 733 aa11.29□□□□□ -0.6
SMAD4-203ENST00000585448 TMC2Q8TDI7 906 aa11.29□□□□□ -0.6
SMAD4-203ENST00000585448 OTUD5Q96G74 571 aa11.28□□□□□ -0.6
SMAD4-203ENST00000585448 C2orf72A6NCS6 295 aa11.27□□□□□ -0.61
SMAD4-203ENST00000585448 DDX27Q96GQ7 796 aaKnown RBP11.25□□□□□ -0.61
SMAD4-203ENST00000585448 LARP6Q9BRS8 491 aaKnown RBP11.24□□□□□ -0.61
SMAD4-203ENST00000585448 KDM2AQ9Y2K7 1162 aa11.24□□□□□ -0.61
SMAD4-203ENST00000585448 PPP1R15BQ5SWA1 713 aa11.22□□□□□ -0.61
SMAD4-203ENST00000585448 SLAIN1Q8ND83 568 aa11.22□□□□□ -0.61
SMAD4-203ENST00000585448 CAMK2BQ13554 666 aa11.21□□□□□ -0.61
SMAD4-203ENST00000585448 DSG2Q14126 1118 aa11.21□□□□□ -0.61
SMAD4-203ENST00000585448 WDR70Q9NW82 654 aa11.2□□□□□ -0.62
SMAD4-203ENST00000585448 SLC34A2O95436 690 aa11.18□□□□□ -0.62
SMAD4-203ENST00000585448 PLPP6Q8IY26 295 aa11.17□□□□□ -0.62
SMAD4-203ENST00000585448 ARIH1Q9Y4X5 557 aaPredicted RBP11.16□□□□□ -0.62
SMAD4-203ENST00000585448 E2F4Q16254 413 aa11.15□□□□□ -0.62
SMAD4-203ENST00000585448 P3H3Q8IVL6 736 aa11.15□□□□□ -0.62
SMAD4-203ENST00000585448 SNPHO15079 494 aa11.14□□□□□ -0.63
SMAD4-203ENST00000585448 HOXB3P14651 431 aaPredicted RBP11.11□□□□□ -0.63
SMAD4-203ENST00000585448 PTCD2Q8WV60 388 aaKnown RBP11.11□□□□□ -0.63
SMAD4-203ENST00000585448 DOK7Q18PE1 504 aa11.1□□□□□ -0.63
SMAD4-203ENST00000585448 ZSWIM6Q9HCJ5 1215 aa11.1□□□□□ -0.63
SMAD4-203ENST00000585448 OXER1Q8TDS5 423 aa11.08□□□□□ -0.64
SMAD4-203ENST00000585448 KCNV2Q8TDN2 545 aa11.07□□□□□ -0.64
SMAD4-203ENST00000585448 ARHGEF1Q92888 912 aaKnown RBP11.07□□□□□ -0.64
SMAD4-203ENST00000585448 EMILIN3Q9NT22 766 aa11.06□□□□□ -0.64
SMAD4-203ENST00000585448 RIMBP2O15034 1052 aa11.05□□□□□ -0.64
SMAD4-203ENST00000585448 TBC1D12O60347 775 aa11.02□□□□□ -0.65
SMAD4-203ENST00000585448 GPR153Q6NV75 609 aa11□□□□□ -0.65
SMAD4-203ENST00000585448 PCDHGA4Q9Y5G9 962 aa11□□□□□ -0.65
SMAD4-203ENST00000585448 KDM4FA0A1W2PPD8 638 aa10.99□□□□□ -0.65
SMAD4-203ENST00000585448 SPDYE16A6NNV3 312 aaPredicted RBP10.99□□□□□ -0.65
SMAD4-203ENST00000585448 PDIA6Q15084 440 aa10.99□□□□□ -0.65
SMAD4-203ENST00000585448 ZNF710Q8N1W2 664 aa10.98□□□□□ -0.65
SMAD4-203ENST00000585448 HOXB1P14653 301 aaPredicted RBP10.97□□□□□ -0.65
SMAD4-203ENST00000585448 MAP3K9P80192 1104 aa10.96□□□□□ -0.65
SMAD4-203ENST00000585448 ANO8Q9HCE9 1232 aaPredicted RBP10.96□□□□□ -0.65
SMAD4-203ENST00000585448 DPYSL4O14531 572 aa10.95□□□□□ -0.66
SMAD4-203ENST00000585448 UPF1Q92900 1129 aaKnown RBP eCLIP10.95□□□□□ -0.66
SMAD4-203ENST00000585448 PTGER2P43116 358 aa10.93□□□□□ -0.66
SMAD4-203ENST00000585448 ST18O60284 1047 aa10.92□□□□□ -0.66
SMAD4-203ENST00000585448 ZNF316A6NFI3 1004 aaPredicted RBP10.91□□□□□ -0.66
SMAD4-203ENST00000585448 EVI5O60447 810 aa10.91□□□□□ -0.66
SMAD4-203ENST00000585448 MYT1Q01538 1121 aa10.91□□□□□ -0.66
SMAD4-203ENST00000585448 ARSIQ5FYB1 569 aa10.91□□□□□ -0.66
SMAD4-203ENST00000585448 LCE2DQ5TA82 110 aaPredicted RBP10.89□□□□□ -0.67
SMAD4-203ENST00000585448 PSDA5PKW4 1024 aaPredicted RBP10.86□□□□□ -0.67
SMAD4-203ENST00000585448 NUDT7P0C024 238 aa10.86□□□□□ -0.67
SMAD4-203ENST00000585448 BCANQ96GW7 911 aa10.85□□□□□ -0.67
SMAD4-203ENST00000585448 TESPA1A2RU30 521 aaPredicted RBP10.84□□□□□ -0.67
SMAD4-203ENST00000585448 NBR1Q14596 966 aa10.84□□□□□ -0.67
SMAD4-203ENST00000585448 KHSRPQ92945 711 aaKnown RBP eCLIP10.84□□□□□ -0.672e-7■■■■□ 20.5
SMAD4-203ENST00000585448 FAM163AQ96GL9 167 aaPredicted RBP10.83□□□□□ -0.68
SMAD4-203ENST00000585448 PHF14O94880 888 aa10.82□□□□□ -0.68
SMAD4-203ENST00000585448 JPH4Q96JJ6 628 aa10.82□□□□□ -0.68
SMAD4-203ENST00000585448 SEMA3EO15041 775 aa10.81□□□□□ -0.68
SMAD4-203ENST00000585448 FOSBP53539 338 aa10.8□□□□□ -0.68
SMAD4-203ENST00000585448 EPAS1Q99814 870 aa10.8□□□□□ -0.68
SMAD4-203ENST00000585448 LHX6Q9UPM6 363 aa10.8□□□□□ -0.68
SMAD4-203ENST00000585448 SMYD5Q6GMV2 418 aa10.79□□□□□ -0.68
SMAD4-203ENST00000585448 EMP3P54852 163 aa10.78□□□□□ -0.68
SMAD4-203ENST00000585448 FBXW7Q969H0 707 aa10.77□□□□□ -0.69
SMAD4-203ENST00000585448 PCDHGA10Q9Y5H3 936 aa10.76□□□□□ -0.69
SMAD4-203ENST00000585448 PPP4R3BQ5MIZ7 849 aa10.75□□□□□ -0.69
SMAD4-203ENST00000585448 OSBPP22059 807 aa10.74□□□□□ -0.69
SMAD4-203ENST00000585448 MLLT3P42568 568 aaPredicted RBP10.74□□□□□ -0.69
SMAD4-203ENST00000585448 TYW1BQ6NUM6 668 aa10.74□□□□□ -0.69
SMAD4-203ENST00000585448 MARVELD3Q96A59 401 aa10.74□□□□□ -0.69
SMAD4-203ENST00000585448 ERBB3P21860 1342 aa10.74□□□□□ -0.69
SMAD4-203ENST00000585448 DDX12PQ92771 950 aa10.73□□□□□ -0.69
SMAD4-203ENST00000585448 TULP1O00294 542 aaPredicted RBP10.72□□□□□ -0.69
SMAD4-203ENST00000585448 EN1Q05925 392 aaPredicted RBP10.72□□□□□ -0.69
SMAD4-203ENST00000585448 ZNF454Q8N9F8 522 aa10.72□□□□□ -0.69
SMAD4-203ENST00000585448 ZDHHC16Q969W1 377 aa10.72□□□□□ -0.69
SMAD4-203ENST00000585448 BCL2L12Q9HB09 334 aa10.71□□□□□ -0.69
SMAD4-203ENST00000585448 GRXCR2A6NFK2 248 aa10.7□□□□□ -0.7
SMAD4-203ENST00000585448 VARS2Q5ST30 1063 aaKnown RBP10.7□□□□□ -0.7
SMAD4-203ENST00000585448 ZNF687Q8N1G0 1237 aa10.7□□□□□ -0.7
SMAD4-203ENST00000585448 HS3ST6Q96QI5 342 aa10.7□□□□□ -0.7
SMAD4-203ENST00000585448 FAM205CA6NFA0 338 aa10.69□□□□□ -0.7
SMAD4-203ENST00000585448 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.68□□□□□ -0.7
SMAD4-203ENST00000585448 PBX2P40425 430 aa10.67□□□□□ -0.7
SMAD4-203ENST00000585448 POTEB3A0JP26 581 aa10.65□□□□□ -0.7
SMAD4-203ENST00000585448 POTEBQ6S5H4 581 aa10.65□□□□□ -0.7
SMAD4-203ENST00000585448 ADAM33Q9BZ11 813 aa10.65□□□□□ -0.7
SMAD4-203ENST00000585448 POTEMA6NI47 508 aa10.64□□□□□ -0.71
SMAD4-203ENST00000585448 PRIM1P49642 420 aaKnown RBP10.64□□□□□ -0.71
SMAD4-203ENST00000585448 POTEGQ6S5H5 508 aa10.64□□□□□ -0.71
SMAD4-203ENST00000585448 C6orf132Q5T0Z8 1188 aa10.63□□□□□ -0.71
SMAD4-203ENST00000585448 CERKQ8TCT0 537 aa10.63□□□□□ -0.71
SMAD4-203ENST00000585448 PTPREP23469 700 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms