RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 MAGI2Q86UL8 1455 aa19.74■□□□□ 0.75
SS18-225ENST00000585121 RICTORQ6R327 1708 aa19.74■□□□□ 0.75
SS18-225ENST00000585121 POGZQ7Z3K3 1410 aa19.74■□□□□ 0.75
SS18-225ENST00000585121 MTUS2Q5JR59 1369 aa19.73■□□□□ 0.75
SS18-225ENST00000585121 ZMYM4Q5VZL5 1548 aa19.72■□□□□ 0.75
SS18-225ENST00000585121 MYT1LQ9UL68 1186 aa19.71■□□□□ 0.75
SS18-225ENST00000585121 ZFYVE16Q7Z3T8 1539 aa19.71■□□□□ 0.74
SS18-225ENST00000585121 ARHGEF40Q8TER5 1519 aa19.71■□□□□ 0.74
SS18-225ENST00000585121 ZNF518AQ6AHZ1 1483 aa19.69■□□□□ 0.74
SS18-225ENST00000585121 YEATS2Q9ULM3 1422 aa19.68■□□□□ 0.74
SS18-225ENST00000585121 AFAP1Q8N556 730 aa19.68■□□□□ 0.74
SS18-225ENST00000585121 ZNF777Q9ULD5 760 aaPredicted RBP19.67■□□□□ 0.74
SS18-225ENST00000585121 CCNB3Q8WWL7 1395 aa19.66■□□□□ 0.74
SS18-225ENST00000585121 PREX2Q70Z35 1606 aa19.65■□□□□ 0.74
SS18-225ENST00000585121 CFDP1Q9UEE9 299 aaPredicted RBP19.65■□□□□ 0.74
SS18-225ENST00000585121 CDC42BPBQ9Y5S2 1711 aa19.64■□□□□ 0.73
SS18-225ENST00000585121 ATP10AO60312 1499 aa19.63■□□□□ 0.73
SS18-225ENST00000585121 GPATCH8Q9UKJ3 1502 aaKnown RBP19.63■□□□□ 0.73
SS18-225ENST00000585121 BCORL1Q5H9F3 1711 aa19.61■□□□□ 0.73
SS18-225ENST00000585121 C9orf84Q5VXU9 1444 aa19.61■□□□□ 0.73
SS18-225ENST00000585121 MLECQ14165 292 aa19.61■□□□□ 0.73
SS18-225ENST00000585121 ADAMTSL3P82987 1691 aa19.6■□□□□ 0.73
SS18-225ENST00000585121 EHBP1L1Q8N3D4 1523 aa19.6■□□□□ 0.73
SS18-225ENST00000585121 VPS8Q8N3P4 1428 aa19.6■□□□□ 0.73
SS18-225ENST00000585121 ABCC1P33527 1531 aa19.59■□□□□ 0.73
SS18-225ENST00000585121 PTPRMP28827 1452 aa19.59■□□□□ 0.73
SS18-225ENST00000585121 TRAPPC8Q9Y2L5 1435 aa19.59■□□□□ 0.73
SS18-225ENST00000585121 CDC42BPAQ5VT25 1732 aa19.59■□□□□ 0.73
SS18-225ENST00000585121 KDM5CP41229 1560 aa19.59■□□□□ 0.73
SS18-225ENST00000585121 PLEKHH2Q8IVE3 1493 aa19.57■□□□□ 0.72
SS18-225ENST00000585121 MLH3Q9UHC1 1453 aa19.57■□□□□ 0.72
SS18-225ENST00000585121 ARHGEF12Q9NZN5 1544 aa19.57■□□□□ 0.72
SS18-225ENST00000585121 HNRNPMP52272 730 aaKnown RBP eCLIP19.56■□□□□ 0.72
SS18-225ENST00000585121 HECW2Q9P2P5 1572 aa19.55■□□□□ 0.72
SS18-225ENST00000585121 MADDQ8WXG6 1647 aa19.54■□□□□ 0.72
SS18-225ENST00000585121 SPAG9O60271 1321 aaKnown RBP19.54■□□□□ 0.72
SS18-225ENST00000585121 KIAA1107Q9UPP5 1409 aa19.54■□□□□ 0.72
SS18-225ENST00000585121 ITSN2Q9NZM3 1697 aa19.53■□□□□ 0.72
SS18-225ENST00000585121 SAMD9LQ8IVG5 1584 aa19.52■□□□□ 0.72
SS18-225ENST00000585121 SYCP2Q9BX26 1530 aa19.51■□□□□ 0.71
SS18-225ENST00000585121 APLP2Q06481 763 aa19.51■□□□□ 0.71
SS18-225ENST00000585121 PLPPR3Q6T4P5 718 aa19.51■□□□□ 0.71
SS18-225ENST00000585121 TIAM1Q13009 1591 aa19.5■□□□□ 0.71
SS18-225ENST00000585121 DIP2CQ9Y2E4 1556 aa19.49■□□□□ 0.71
SS18-225ENST00000585121 NCOA2Q15596 1464 aa19.48■□□□□ 0.71
SS18-225ENST00000585121 RIMS1Q86UR5 1692 aaKnown RBP19.48■□□□□ 0.71
SS18-225ENST00000585121 ESF1Q9H501 851 aaKnown RBP19.48■□□□□ 0.71
SS18-225ENST00000585121 ZNF644Q9H582 1327 aaPredicted RBP19.48■□□□□ 0.71
SS18-225ENST00000585121 SUPT6HQ7KZ85 1726 aaKnown RBP19.47■□□□□ 0.71
SS18-225ENST00000585121 SIGLEC1Q9BZZ2 1709 aa19.47■□□□□ 0.71
SS18-225ENST00000585121 LRRC9Q6ZRR7 1453 aa19.46■□□□□ 0.71
SS18-225ENST00000585121 REREQ9P2R6 1566 aa19.46■□□□□ 0.71
SS18-225ENST00000585121 ABCA6Q8N139 1617 aa19.45■□□□□ 0.7
SS18-225ENST00000585121 MAP3K1Q13233 1512 aa19.45■□□□□ 0.7
SS18-225ENST00000585121 RSPH4AQ5TD94 716 aa19.43■□□□□ 0.7
SS18-225ENST00000585121 KIDINS220Q9ULH0 1771 aa19.43■□□□□ 0.7
SS18-225ENST00000585121 AGLP35573 1532 aa19.43■□□□□ 0.7
SS18-225ENST00000585121 KANK4Q5T7N3 995 aaPredicted RBP19.41■□□□□ 0.7
SS18-225ENST00000585121 FER1L4A9Z1Z3 1794 aa19.41■□□□□ 0.7
SS18-225ENST00000585121 ATP7AQ04656 1500 aa19.4■□□□□ 0.7
SS18-225ENST00000585121 MBD5Q9P267 1494 aa19.39■□□□□ 0.69
SS18-225ENST00000585121 CAMSAP2Q08AD1 1489 aa19.38■□□□□ 0.69
SS18-225ENST00000585121 CEBPAP49715 358 aaPredicted RBP19.37■□□□□ 0.69
SS18-225ENST00000585121 RTEL1-TNFRSF6BF6WH68 1400 aa19.37■□□□□ 0.69
SS18-225ENST00000585121 TSPY4P0CV99 314 aa19.36■□□□□ 0.69
SS18-225ENST00000585121 TSPY10P0CW01 314 aa19.36■□□□□ 0.69
SS18-225ENST00000585121 A2MP01023 1474 aa19.36■□□□□ 0.69
SS18-225ENST00000585121 CCDC141Q6ZP82 1450 aa19.35■□□□□ 0.69
SS18-225ENST00000585121 INO80Q9ULG1 1556 aaPredicted RBP19.35■□□□□ 0.69
SS18-225ENST00000585121 CNTLNQ9NXG0 1405 aa19.34■□□□□ 0.69
SS18-225ENST00000585121 LMTK3Q96Q04 1460 aa19.33■□□□□ 0.69
SS18-225ENST00000585121 MYOM3Q5VTT5 1437 aa19.32■□□□□ 0.68
SS18-225ENST00000585121 MIA2Q96PC5 1412 aa19.32■□□□□ 0.68
SS18-225ENST00000585121 GGT6Q6P531 493 aa19.32■□□□□ 0.68
SS18-225ENST00000585121 HSPA2P54652 639 aa19.3■□□□□ 0.68
SS18-225ENST00000585121 PPP6R1Q9UPN7 881 aa19.3■□□□□ 0.68
SS18-225ENST00000585121 DHX29Q7Z478 1369 aaKnown RBP19.3■□□□□ 0.68
SS18-225ENST00000585121 ADGBQ8N7X0 1667 aa19.28■□□□□ 0.68
SS18-225ENST00000585121 PLXNC1O60486 1568 aa19.28■□□□□ 0.68
SS18-225ENST00000585121 ARHGEF5Q12774 1597 aa19.28■□□□□ 0.68
SS18-225ENST00000585121 UHRF1BP1Q6BDS2 1440 aa19.26■□□□□ 0.67
SS18-225ENST00000585121 KIF3BO15066 747 aa19.25■□□□□ 0.67
SS18-225ENST00000585121 ZMYM3Q14202 1370 aa19.25■□□□□ 0.67
SS18-225ENST00000585121 SETD1BQ9UPS6 1966 aaKnown RBP19.23■□□□□ 0.67
SS18-225ENST00000585121 C3P01024 1663 aa19.21■□□□□ 0.67
SS18-225ENST00000585121 PREX1Q8TCU6 1659 aa19.21■□□□□ 0.67
SS18-225ENST00000585121 NPATQ14207 1427 aa19.2■□□□□ 0.66
SS18-225ENST00000585121 MROH2AA6NES4 1674 aa19.18■□□□□ 0.66
SS18-225ENST00000585121 FGD6Q6ZV73 1430 aa19.17■□□□□ 0.66
SS18-225ENST00000585121 WASHC2CQ9Y4E1 1318 aa19.17■□□□□ 0.66
SS18-225ENST00000585121 DMRT2Q9Y5R5 561 aa19.17■□□□□ 0.66
SS18-225ENST00000585121 MAST1Q9Y2H9 1570 aa19.17■□□□□ 0.66
SS18-225ENST00000585121 CLTCQ00610 1675 aaKnown RBP19.16■□□□□ 0.66
SS18-225ENST00000585121 PTPN23Q9H3S7 1636 aa19.15■□□□□ 0.66
SS18-225ENST00000585121 ABCC5O15440 1437 aa19.13■□□□□ 0.65
SS18-225ENST00000585121 PTPRKQ15262 1439 aa19.12■□□□□ 0.65
SS18-225ENST00000585121 FAM135AQ9P2D6 1515 aa19.12■□□□□ 0.65
SS18-225ENST00000585121 TCOF1Q13428 1488 aaKnown RBP19.12■□□□□ 0.65
SS18-225ENST00000585121 FAM50AQ14320 339 aaKnown RBP19.11■□□□□ 0.65
SS18-225ENST00000585121 ILDR1Q86SU0 546 aaPredicted RBP19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms