RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 CDC42BPBQ9Y5S2 1711 aa32.62■■■□□ 2.81
SS18-224ENST00000584083 PREX2Q70Z35 1606 aa32.58■■■□□ 2.81
SS18-224ENST00000584083 POGZQ7Z3K3 1410 aa32.57■■■□□ 2.8
SS18-224ENST00000584083 MTUS2Q5JR59 1369 aa32.57■■■□□ 2.8
SS18-224ENST00000584083 ZMYM4Q5VZL5 1548 aa32.56■■■□□ 2.8
SS18-224ENST00000584083 CDC42BPAQ5VT25 1732 aa32.55■■■□□ 2.8
SS18-224ENST00000584083 ARHGEF40Q8TER5 1519 aa32.55■■■□□ 2.8
SS18-224ENST00000584083 ARID4BQ4LE39 1312 aaPredicted RBP32.51■■■□□ 2.8
SS18-224ENST00000584083 ZFYVE16Q7Z3T8 1539 aa32.51■■■□□ 2.79
SS18-224ENST00000584083 MAGI2Q86UL8 1455 aa32.5■■■□□ 2.79
SS18-224ENST00000584083 YEATS2Q9ULM3 1422 aa32.47■■■□□ 2.79
SS18-224ENST00000584083 ZNF518AQ6AHZ1 1483 aa32.46■■■□□ 2.79
SS18-224ENST00000584083 VPS8Q8N3P4 1428 aa32.45■■■□□ 2.79
SS18-224ENST00000584083 AFAP1Q8N556 730 aa32.44■■■□□ 2.78
SS18-224ENST00000584083 ZNF777Q9ULD5 760 aaPredicted RBP32.44■■■□□ 2.78
SS18-224ENST00000584083 EHBP1L1Q8N3D4 1523 aa32.44■■■□□ 2.78
SS18-224ENST00000584083 GPATCH8Q9UKJ3 1502 aaKnown RBP32.44■■■□□ 2.78
SS18-224ENST00000584083 CCNB3Q8WWL7 1395 aa32.43■■■□□ 2.78
SS18-224ENST00000584083 MYT1LQ9UL68 1186 aa32.42■■■□□ 2.78
SS18-224ENST00000584083 ABCC1P33527 1531 aa32.41■■■□□ 2.78
SS18-224ENST00000584083 BCORL1Q5H9F3 1711 aa32.4■■■□□ 2.78
SS18-224ENST00000584083 ITSN2Q9NZM3 1697 aa32.39■■■□□ 2.78
SS18-224ENST00000584083 ADAMTSL3P82987 1691 aa32.38■■■□□ 2.77
SS18-224ENST00000584083 CFDP1Q9UEE9 299 aaPredicted RBP32.38■■■□□ 2.77
SS18-224ENST00000584083 KDM5CP41229 1560 aa32.37■■■□□ 2.77
SS18-224ENST00000584083 ARHGEF12Q9NZN5 1544 aa32.37■■■□□ 2.77
SS18-224ENST00000584083 TIAM1Q13009 1591 aa32.36■■■□□ 2.77
SS18-224ENST00000584083 TRAPPC8Q9Y2L5 1435 aa32.35■■■□□ 2.77
SS18-224ENST00000584083 SAMD9LQ8IVG5 1584 aa32.35■■■□□ 2.77
SS18-224ENST00000584083 ATP10AO60312 1499 aa32.34■■■□□ 2.77
SS18-224ENST00000584083 HECW2Q9P2P5 1572 aa32.33■■■□□ 2.77
SS18-224ENST00000584083 SIGLEC1Q9BZZ2 1709 aa32.31■■■□□ 2.76
SS18-224ENST00000584083 SUPT6HQ7KZ85 1726 aaKnown RBP32.3■■■□□ 2.76
SS18-224ENST00000584083 MADDQ8WXG6 1647 aa32.29■■■□□ 2.76
SS18-224ENST00000584083 C9orf84Q5VXU9 1444 aa32.29■■■□□ 2.76
SS18-224ENST00000584083 SYCP2Q9BX26 1530 aa32.28■■■□□ 2.76
SS18-224ENST00000584083 HNRNPMP52272 730 aaKnown RBP eCLIP32.28■■■□□ 2.76
SS18-224ENST00000584083 MLH3Q9UHC1 1453 aa32.28■■■□□ 2.76
SS18-224ENST00000584083 MLECQ14165 292 aa32.26■■■□□ 2.75
SS18-224ENST00000584083 PLEKHH2Q8IVE3 1493 aa32.26■■■□□ 2.75
SS18-224ENST00000584083 PTPRMP28827 1452 aa32.25■■■□□ 2.75
SS18-224ENST00000584083 NCOA2Q15596 1464 aa32.25■■■□□ 2.75
SS18-224ENST00000584083 DIP2CQ9Y2E4 1556 aa32.24■■■□□ 2.75
SS18-224ENST00000584083 KIAA1107Q9UPP5 1409 aa32.23■■■□□ 2.75
SS18-224ENST00000584083 LRRC9Q6ZRR7 1453 aa32.22■■■□□ 2.75
SS18-224ENST00000584083 ABCA6Q8N139 1617 aa32.22■■■□□ 2.75
SS18-224ENST00000584083 RIMS1Q86UR5 1692 aaKnown RBP32.21■■■□□ 2.75
SS18-224ENST00000584083 KIDINS220Q9ULH0 1771 aa32.2■■■□□ 2.75
SS18-224ENST00000584083 ZNF644Q9H582 1327 aaPredicted RBP32.2■■■□□ 2.74
SS18-224ENST00000584083 MAP3K1Q13233 1512 aa32.2■■■□□ 2.74
SS18-224ENST00000584083 SPAG9O60271 1321 aaKnown RBP32.19■■■□□ 2.74
SS18-224ENST00000584083 APLP2Q06481 763 aa32.16■■■□□ 2.74
SS18-224ENST00000584083 KANK4Q5T7N3 995 aaPredicted RBP32.15■■■□□ 2.74
SS18-224ENST00000584083 FER1L4A9Z1Z3 1794 aa32.14■■■□□ 2.74
SS18-224ENST00000584083 REREQ9P2R6 1566 aa32.14■■■□□ 2.74
SS18-224ENST00000584083 PLPPR3Q6T4P5 718 aa32.1■■■□□ 2.73
SS18-224ENST00000584083 ATP7AQ04656 1500 aa32.09■■■□□ 2.73
SS18-224ENST00000584083 MBD5Q9P267 1494 aa32.06■■■□□ 2.72
SS18-224ENST00000584083 INO80Q9ULG1 1556 aaPredicted RBP32.06■■■□□ 2.72
SS18-224ENST00000584083 CAMSAP2Q08AD1 1489 aa32.05■■■□□ 2.72
SS18-224ENST00000584083 AGLP35573 1532 aa32.05■■■□□ 2.72
SS18-224ENST00000584083 RSPH4AQ5TD94 716 aa31.97■■■□□ 2.71
SS18-224ENST00000584083 CCDC141Q6ZP82 1450 aa31.97■■■□□ 2.71
SS18-224ENST00000584083 ESF1Q9H501 851 aaKnown RBP31.96■■■□□ 2.71
SS18-224ENST00000584083 A2MP01023 1474 aa31.96■■■□□ 2.71
SS18-224ENST00000584083 MYOM3Q5VTT5 1437 aa31.95■■■□□ 2.71
SS18-224ENST00000584083 ADGBQ8N7X0 1667 aa31.94■■■□□ 2.7
SS18-224ENST00000584083 RTEL1-TNFRSF6BF6WH68 1400 aa31.92■■■□□ 2.7
SS18-224ENST00000584083 ARHGEF5Q12774 1597 aa31.91■■■□□ 2.7
SS18-224ENST00000584083 CEBPAP49715 358 aaPredicted RBP31.91■■■□□ 2.7
SS18-224ENST00000584083 MIA2Q96PC5 1412 aa31.91■■■□□ 2.7
SS18-224ENST00000584083 PLXNC1O60486 1568 aa31.9■■■□□ 2.7
SS18-224ENST00000584083 TSPY4P0CV99 314 aa31.88■■■□□ 2.69
SS18-224ENST00000584083 TSPY10P0CW01 314 aa31.88■■■□□ 2.69
SS18-224ENST00000584083 LMTK3Q96Q04 1460 aa31.85■■■□□ 2.69
SS18-224ENST00000584083 C3P01024 1663 aa31.82■■■□□ 2.68
SS18-224ENST00000584083 CNTLNQ9NXG0 1405 aa31.82■■■□□ 2.68
SS18-224ENST00000584083 GGT6Q6P531 493 aa31.81■■■□□ 2.68
SS18-224ENST00000584083 DHX29Q7Z478 1369 aaKnown RBP31.81■■■□□ 2.68
SS18-224ENST00000584083 PTPN23Q9H3S7 1636 aa31.78■■■□□ 2.68
SS18-224ENST00000584083 SETD1BQ9UPS6 1966 aaKnown RBP31.77■■■□□ 2.68
SS18-224ENST00000584083 PREX1Q8TCU6 1659 aa31.76■■■□□ 2.67
SS18-224ENST00000584083 CLTCQ00610 1675 aaKnown RBP31.74■■■□□ 2.67
SS18-224ENST00000584083 HSPA2P54652 639 aa31.74■■■□□ 2.67
SS18-224ENST00000584083 MROH2AA6NES4 1674 aa31.73■■■□□ 2.67
SS18-224ENST00000584083 MAST1Q9Y2H9 1570 aa31.73■■■□□ 2.67
SS18-224ENST00000584083 KIF3BO15066 747 aa31.73■■■□□ 2.67
SS18-224ENST00000584083 FGD6Q6ZV73 1430 aa31.73■■■□□ 2.67
SS18-224ENST00000584083 ZMYM3Q14202 1370 aa31.69■■■□□ 2.66
SS18-224ENST00000584083 PPP6R1Q9UPN7 881 aa31.69■■■□□ 2.66
SS18-224ENST00000584083 UHRF1BP1Q6BDS2 1440 aa31.66■■■□□ 2.66
SS18-224ENST00000584083 TCOF1Q13428 1488 aaKnown RBP31.65■■■□□ 2.66
SS18-224ENST00000584083 CROCC2H7BZ55 1655 aa31.64■■■□□ 2.66
SS18-224ENST00000584083 ABCC5O15440 1437 aa31.64■■■□□ 2.66
SS18-224ENST00000584083 DNMT1P26358 1616 aaKnown RBP31.6■■■□□ 2.65
SS18-224ENST00000584083 DAPK1P53355 1430 aa31.6■■■□□ 2.65
SS18-224ENST00000584083 SHANK2Q9UPX8 1470 aa31.59■■■□□ 2.65
SS18-224ENST00000584083 NPATQ14207 1427 aa31.58■■■□□ 2.65
SS18-224ENST00000584083 FAM50AQ14320 339 aaKnown RBP31.57■■■□□ 2.64
SS18-224ENST00000584083 WASHC2CQ9Y4E1 1318 aa31.55■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms