RNA–Protein interactions for RNA: ENST00000576921.1

HCFC1R1-209, Transcript of host cell factor C1 regulator 1, human

TSL 1 (best)

Gene HCFC1R1, Length 1,199 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCFC1R1-209	ENST00000576921	PREX2	Q70Z35	1606 aa		33.95	■■■■□ 3.03
HCFC1R1-209	ENST00000576921	EFCAB2	Q5VUJ9	269 aa		33.93	■■■■□ 3.02
HCFC1R1-209	ENST00000576921	SCAPER	Q9BY12	1400 aa		33.93	■■■■□ 3.02
HCFC1R1-209	ENST00000576921	ZMYM4	Q5VZL5	1548 aa		33.93	■■■■□ 3.02
HCFC1R1-209	ENST00000576921	CDC42BPA	Q5VT25	1732 aa		33.9	■■■■□ 3.02
HCFC1R1-209	ENST00000576921	POGZ	Q7Z3K3	1410 aa		33.89	■■■■□ 3.02
HCFC1R1-209	ENST00000576921	ZFYVE16	Q7Z3T8	1539 aa		33.86	■■■■□ 3.01
HCFC1R1-209	ENST00000576921	YEATS2	Q9ULM3	1422 aa		33.8	■■■■□ 3
HCFC1R1-209	ENST00000576921	MTUS2	Q5JR59	1369 aa		33.8	■■■■□ 3
HCFC1R1-209	ENST00000576921	BCORL1	Q5H9F3	1711 aa		33.79	■■■■□ 3
HCFC1R1-209	ENST00000576921	ARID4B	Q4LE39	1312 aa	Predicted RBP	33.79	■■■■□ 3
HCFC1R1-209	ENST00000576921	MAGI2	Q86UL8	1455 aa		33.78	■■■■□ 3
HCFC1R1-209	ENST00000576921	ITSN2	Q9NZM3	1697 aa		33.77	■■■■□ 3
HCFC1R1-209	ENST00000576921	ZNF518A	Q6AHZ1	1483 aa		33.76	■■■■□ 3
HCFC1R1-209	ENST00000576921	ABCC1	P33527	1531 aa		33.76	■■■■□ 3
HCFC1R1-209	ENST00000576921	EHBP1L1	Q8N3D4	1523 aa		33.76	■■■■□ 3
HCFC1R1-209	ENST00000576921	ADAMTSL3	P82987	1691 aa		33.76	■■■□□ 2.99
HCFC1R1-209	ENST00000576921	SIGLEC1	Q9BZZ2	1709 aa		33.73	■■■□□ 2.99
HCFC1R1-209	ENST00000576921	KDM5C	P41229	1560 aa		33.72	■■■□□ 2.99
HCFC1R1-209	ENST00000576921	GPATCH8	Q9UKJ3	1502 aa	Known RBP	33.7	■■■□□ 2.99
HCFC1R1-209	ENST00000576921	HECW2	Q9P2P5	1572 aa		33.7	■■■□□ 2.99
HCFC1R1-209	ENST00000576921	VPS8	Q8N3P4	1428 aa		33.7	■■■□□ 2.98
HCFC1R1-209	ENST00000576921	MADD	Q8WXG6	1647 aa		33.69	■■■□□ 2.98
HCFC1R1-209	ENST00000576921	SAMD9L	Q8IVG5	1584 aa		33.68	■■■□□ 2.98
HCFC1R1-209	ENST00000576921	ARHGEF12	Q9NZN5	1544 aa		33.67	■■■□□ 2.98
HCFC1R1-209	ENST00000576921	AFAP1	Q8N556	730 aa		33.66	■■■□□ 2.98
HCFC1R1-209	ENST00000576921	CCNB3	Q8WWL7	1395 aa		33.66	■■■□□ 2.98
HCFC1R1-209	ENST00000576921	ZNF777	Q9ULD5	760 aa	Predicted RBP	33.66	■■■□□ 2.98
HCFC1R1-209	ENST00000576921	TIAM1	Q13009	1591 aa		33.65	■■■□□ 2.98
HCFC1R1-209	ENST00000576921	MYT1L	Q9UL68	1186 aa		33.64	■■■□□ 2.98
HCFC1R1-209	ENST00000576921	TRAPPC8	Q9Y2L5	1435 aa		33.62	■■■□□ 2.97
HCFC1R1-209	ENST00000576921	SYCP2	Q9BX26	1530 aa		33.62	■■■□□ 2.97
HCFC1R1-209	ENST00000576921	ATP10A	O60312	1499 aa		33.62	■■■□□ 2.97
HCFC1R1-209	ENST00000576921	RIMS1	Q86UR5	1692 aa	Known RBP	33.61	■■■□□ 2.97
HCFC1R1-209	ENST00000576921	SUPT6H	Q7KZ85	1726 aa	Known RBP	33.61	■■■□□ 2.97
HCFC1R1-209	ENST00000576921	C9orf84	Q5VXU9	1444 aa		33.61	■■■□□ 2.97
HCFC1R1-209	ENST00000576921	ABCA6	Q8N139	1617 aa		33.59	■■■□□ 2.97
HCFC1R1-209	ENST00000576921	DIP2C	Q9Y2E4	1556 aa		33.59	■■■□□ 2.97
HCFC1R1-209	ENST00000576921	PTPRM	P28827	1452 aa		33.58	■■■□□ 2.97
HCFC1R1-209	ENST00000576921	CFDP1	Q9UEE9	299 aa	Predicted RBP	33.58	■■■□□ 2.97
HCFC1R1-209	ENST00000576921	MLH3	Q9UHC1	1453 aa		33.55	■■■□□ 2.96
HCFC1R1-209	ENST00000576921	FER1L4	A9Z1Z3	1794 aa		33.55	■■■□□ 2.96
HCFC1R1-209	ENST00000576921	KIDINS220	Q9ULH0	1771 aa		33.53	■■■□□ 2.96
HCFC1R1-209	ENST00000576921	PLEKHH2	Q8IVE3	1493 aa		33.52	■■■□□ 2.96
HCFC1R1-209	ENST00000576921	MLEC	Q14165	292 aa		33.52	■■■□□ 2.96
HCFC1R1-209	ENST00000576921	NCOA2	Q15596	1464 aa		33.51	■■■□□ 2.96
HCFC1R1-209	ENST00000576921	HNRNPM	P52272	730 aa	Known RBP eCLIP	33.48	■■■□□ 2.95
HCFC1R1-209	ENST00000576921	RERE	Q9P2R6	1566 aa		33.47	■■■□□ 2.95
HCFC1R1-209	ENST00000576921	KIAA1107	Q9UPP5	1409 aa		33.46	■■■□□ 2.95
HCFC1R1-209	ENST00000576921	LRRC9	Q6ZRR7	1453 aa		33.46	■■■□□ 2.95
HCFC1R1-209	ENST00000576921	MAP3K1	Q13233	1512 aa		33.42	■■■□□ 2.94
HCFC1R1-209	ENST00000576921	INO80	Q9ULG1	1556 aa	Predicted RBP	33.41	■■■□□ 2.94
HCFC1R1-209	ENST00000576921	ATP7A	Q04656	1500 aa		33.4	■■■□□ 2.94
HCFC1R1-209	ENST00000576921	SPAG9	O60271	1321 aa	Known RBP	33.4	■■■□□ 2.94
HCFC1R1-209	ENST00000576921	ZNF644	Q9H582	1327 aa	Predicted RBP	33.4	■■■□□ 2.94
HCFC1R1-209	ENST00000576921	PLPPR3	Q6T4P5	718 aa		33.39	■■■□□ 2.94
HCFC1R1-209	ENST00000576921	CAMSAP2	Q08AD1	1489 aa		33.35	■■■□□ 2.93
HCFC1R1-209	ENST00000576921	AGL	P35573	1532 aa		33.33	■■■□□ 2.93
HCFC1R1-209	ENST00000576921	KANK4	Q5T7N3	995 aa	Predicted RBP	33.33	■■■□□ 2.93
HCFC1R1-209	ENST00000576921	MBD5	Q9P267	1494 aa		33.31	■■■□□ 2.92
HCFC1R1-209	ENST00000576921	APLP2	Q06481	763 aa		33.28	■■■□□ 2.92
HCFC1R1-209	ENST00000576921	ADGB	Q8N7X0	1667 aa		33.27	■■■□□ 2.92
HCFC1R1-209	ENST00000576921	CCDC141	Q6ZP82	1450 aa		33.25	■■■□□ 2.91
HCFC1R1-209	ENST00000576921	PLXNC1	O60486	1568 aa		33.23	■■■□□ 2.91
HCFC1R1-209	ENST00000576921	A2M	P01023	1474 aa		33.22	■■■□□ 2.91
HCFC1R1-209	ENST00000576921	LMTK3	Q96Q04	1460 aa		33.2	■■■□□ 2.91
HCFC1R1-209	ENST00000576921	ARHGEF5	Q12774	1597 aa		33.19	■■■□□ 2.9
HCFC1R1-209	ENST00000576921	MYOM3	Q5VTT5	1437 aa		33.19	■■■□□ 2.9
HCFC1R1-209	ENST00000576921	C3	P01024	1663 aa		33.17	■■■□□ 2.9
HCFC1R1-209	ENST00000576921	ESF1	Q9H501	851 aa	Known RBP	33.17	■■■□□ 2.9
HCFC1R1-209	ENST00000576921	RTEL1-TNFRSF6B	F6WH68	1400 aa		33.16	■■■□□ 2.9
HCFC1R1-209	ENST00000576921	CEBPA	P49715	358 aa	Predicted RBP	33.14	■■■□□ 2.9
HCFC1R1-209	ENST00000576921	PREX1	Q8TCU6	1659 aa		33.13	■■■□□ 2.89
HCFC1R1-209	ENST00000576921	MIA2	Q96PC5	1412 aa		33.11	■■■□□ 2.89
HCFC1R1-209	ENST00000576921	RSPH4A	Q5TD94	716 aa		33.09	■■■□□ 2.89
HCFC1R1-209	ENST00000576921	MROH2A	A6NES4	1674 aa		33.08	■■■□□ 2.89
HCFC1R1-209	ENST00000576921	CLTC	Q00610	1675 aa	Known RBP	33.08	■■■□□ 2.89
HCFC1R1-209	ENST00000576921	CNTLN	Q9NXG0	1405 aa		33.08	■■■□□ 2.89
HCFC1R1-209	ENST00000576921	PTPN23	Q9H3S7	1636 aa		33.05	■■■□□ 2.88
HCFC1R1-209	ENST00000576921	TSPY4	P0CV99	314 aa		33.03	■■■□□ 2.88
HCFC1R1-209	ENST00000576921	TSPY10	P0CW01	314 aa		33.03	■■■□□ 2.88
HCFC1R1-209	ENST00000576921	MAST1	Q9Y2H9	1570 aa		33.02	■■■□□ 2.88
HCFC1R1-209	ENST00000576921	HSPA2	P54652	639 aa		33.02	■■■□□ 2.88
HCFC1R1-209	ENST00000576921	DHX29	Q7Z478	1369 aa	Known RBP	33.01	■■■□□ 2.88
HCFC1R1-209	ENST00000576921	GGT6	Q6P531	493 aa		33.01	■■■□□ 2.87
HCFC1R1-209	ENST00000576921	SETD1B	Q9UPS6	1966 aa	Known RBP	33	■■■□□ 2.87
HCFC1R1-209	ENST00000576921	CROCC2	H7BZ55	1655 aa		32.99	■■■□□ 2.87
HCFC1R1-209	ENST00000576921	UHRF1BP1	Q6BDS2	1440 aa		32.96	■■■□□ 2.87
HCFC1R1-209	ENST00000576921	FGD6	Q6ZV73	1430 aa		32.95	■■■□□ 2.87
HCFC1R1-209	ENST00000576921	KIF3B	O15066	747 aa		32.92	■■■□□ 2.86
HCFC1R1-209	ENST00000576921	ZMYM3	Q14202	1370 aa		32.92	■■■□□ 2.86
HCFC1R1-209	ENST00000576921	DNMT1	P26358	1616 aa	Known RBP	32.89	■■■□□ 2.86
HCFC1R1-209	ENST00000576921	TCOF1	Q13428	1488 aa	Known RBP	32.88	■■■□□ 2.85
HCFC1R1-209	ENST00000576921	SHANK2	Q9UPX8	1470 aa		32.86	■■■□□ 2.85
HCFC1R1-209	ENST00000576921	ABCC5	O15440	1437 aa		32.85	■■■□□ 2.85
HCFC1R1-209	ENST00000576921	NPAT	Q14207	1427 aa		32.85	■■■□□ 2.85
HCFC1R1-209	ENST00000576921	PPP6R1	Q9UPN7	881 aa		32.85	■■■□□ 2.85
HCFC1R1-209	ENST00000576921	KDM5D	Q9BY66	1539 aa		32.85	■■■□□ 2.85
HCFC1R1-209	ENST00000576921	EIF2AK4	Q9P2K8	1649 aa	Known RBP	32.84	■■■□□ 2.85
HCFC1R1-209	ENST00000576921	DAPK1	P53355	1430 aa		32.84	■■■□□ 2.85

Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms