RNA–Protein interactions for RNA: ENST00000574848.5

LITAF-216, Transcript of lipopolysaccharide induced TNF factor, humanhuman

TSL 4

Gene LITAF, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-216ENST00000574848 ADAMTSL3P82987 1691 aa17.13■□□□□ 0.33
LITAF-216ENST00000574848 CDC42BPBQ9Y5S2 1711 aa17.13■□□□□ 0.33
LITAF-216ENST00000574848 CEP162Q5TB80 1403 aa17.12■□□□□ 0.33
LITAF-216ENST00000574848 ZFYVE16Q7Z3T8 1539 aa17.11■□□□□ 0.33
LITAF-216ENST00000574848 BCORL1Q5H9F3 1711 aa17.11■□□□□ 0.33
LITAF-216ENST00000574848 ARHGAP5Q13017 1502 aa17.11■□□□□ 0.33
LITAF-216ENST00000574848 KDM5CP41229 1560 aa17.11■□□□□ 0.33
LITAF-216ENST00000574848 SCAPERQ9BY12 1400 aa17.1■□□□□ 0.33
LITAF-216ENST00000574848 CDC42BPAQ5VT25 1732 aa17.09■□□□□ 0.33
LITAF-216ENST00000574848 EFCAB2Q5VUJ9 269 aa17.08■□□□□ 0.32
LITAF-216ENST00000574848 ABCC1P33527 1531 aa17.07■□□□□ 0.32
LITAF-216ENST00000574848 ZNF518AQ6AHZ1 1483 aa17.07■□□□□ 0.32
LITAF-216ENST00000574848 SIGLEC1Q9BZZ2 1709 aa17.07■□□□□ 0.32
LITAF-216ENST00000574848 YEATS2Q9ULM3 1422 aa17.06■□□□□ 0.32
LITAF-216ENST00000574848 ITSN2Q9NZM3 1697 aa17.05■□□□□ 0.32
LITAF-216ENST00000574848 MADDQ8WXG6 1647 aa17.03■□□□□ 0.32
LITAF-216ENST00000574848 HECW2Q9P2P5 1572 aa17.03■□□□□ 0.32
LITAF-216ENST00000574848 EHBP1L1Q8N3D4 1523 aa17.02■□□□□ 0.32
LITAF-216ENST00000574848 REREQ9P2R6 1566 aa17.02■□□□□ 0.31
LITAF-216ENST00000574848 PTPRMP28827 1452 aa17.01■□□□□ 0.31
LITAF-216ENST00000574848 C9orf84Q5VXU9 1444 aa17■□□□□ 0.31
LITAF-216ENST00000574848 SAMD9LQ8IVG5 1584 aa17■□□□□ 0.31
LITAF-216ENST00000574848 ARHGEF12Q9NZN5 1544 aa17■□□□□ 0.31
LITAF-216ENST00000574848 GPATCH8Q9UKJ3 1502 aaKnown RBP17■□□□□ 0.31
LITAF-216ENST00000574848 MLH3Q9UHC1 1453 aa16.99■□□□□ 0.31
LITAF-216ENST00000574848 DIP2CQ9Y2E4 1556 aa16.99■□□□□ 0.31
LITAF-216ENST00000574848 ATP10AO60312 1499 aa16.99■□□□□ 0.31
LITAF-216ENST00000574848 ABCA6Q8N139 1617 aa16.97■□□□□ 0.31
LITAF-216ENST00000574848 TIAM1Q13009 1591 aa16.97■□□□□ 0.31
LITAF-216ENST00000574848 RIMS1Q86UR5 1692 aaKnown RBP16.97■□□□□ 0.31
LITAF-216ENST00000574848 MTUS2Q5JR59 1369 aa16.96■□□□□ 0.31
LITAF-216ENST00000574848 TRAPPC8Q9Y2L5 1435 aa16.96■□□□□ 0.3
LITAF-216ENST00000574848 SYCP2Q9BX26 1530 aa16.95■□□□□ 0.3
LITAF-216ENST00000574848 VPS8Q8N3P4 1428 aa16.95■□□□□ 0.3
LITAF-216ENST00000574848 FER1L4A9Z1Z3 1794 aa16.94■□□□□ 0.3
LITAF-216ENST00000574848 KIDINS220Q9ULH0 1771 aa16.94■□□□□ 0.3
LITAF-216ENST00000574848 ARID4BQ4LE39 1312 aaPredicted RBP16.94■□□□□ 0.3
LITAF-216ENST00000574848 PLEKHH2Q8IVE3 1493 aa16.93■□□□□ 0.3
LITAF-216ENST00000574848 KIAA1107Q9UPP5 1409 aa16.93■□□□□ 0.3
LITAF-216ENST00000574848 AFAP1Q8N556 730 aa16.92■□□□□ 0.3
LITAF-216ENST00000574848 AGLP35573 1532 aa16.91■□□□□ 0.3
LITAF-216ENST00000574848 CCNB3Q8WWL7 1395 aa16.91■□□□□ 0.3
LITAF-216ENST00000574848 SUPT6HQ7KZ85 1726 aaKnown RBP16.9■□□□□ 0.3
LITAF-216ENST00000574848 INO80Q9ULG1 1556 aaPredicted RBP16.9■□□□□ 0.3
LITAF-216ENST00000574848 MAP3K1Q13233 1512 aa16.9■□□□□ 0.3
LITAF-216ENST00000574848 LOC105371045A0A1W2PR82 267 aa16.88■□□□□ 0.29
LITAF-216ENST00000574848 NCOA2Q15596 1464 aa16.86■□□□□ 0.29
LITAF-216ENST00000574848 ATP7AQ04656 1500 aa16.86■□□□□ 0.29
LITAF-216ENST00000574848 PLXNC1O60486 1568 aa16.85■□□□□ 0.29
LITAF-216ENST00000574848 CFDP1Q9UEE9 299 aaPredicted RBP16.85■□□□□ 0.29
LITAF-216ENST00000574848 LMTK3Q96Q04 1460 aa16.85■□□□□ 0.29
LITAF-216ENST00000574848 LRRC9Q6ZRR7 1453 aa16.84■□□□□ 0.29
LITAF-216ENST00000574848 MBD5Q9P267 1494 aa16.84■□□□□ 0.29
LITAF-216ENST00000574848 ZNF777Q9ULD5 760 aaPredicted RBP16.81■□□□□ 0.28
LITAF-216ENST00000574848 ADGBQ8N7X0 1667 aa16.8■□□□□ 0.28
LITAF-216ENST00000574848 CAMSAP2Q08AD1 1489 aa16.8■□□□□ 0.28
LITAF-216ENST00000574848 SPAG9O60271 1321 aaKnown RBP16.79■□□□□ 0.28
LITAF-216ENST00000574848 HNRNPMP52272 730 aaKnown RBP eCLIP16.78■□□□□ 0.281e-6■■■□□ 15.6
LITAF-216ENST00000574848 MLECQ14165 292 aa16.78■□□□□ 0.28
LITAF-216ENST00000574848 PREX1Q8TCU6 1659 aa16.78■□□□□ 0.28
LITAF-216ENST00000574848 RTEL1-TNFRSF6BF6WH68 1400 aa16.78■□□□□ 0.28
LITAF-216ENST00000574848 ARHGEF5Q12774 1597 aa16.77■□□□□ 0.28
LITAF-216ENST00000574848 CCDC141Q6ZP82 1450 aa16.77■□□□□ 0.28
LITAF-216ENST00000574848 MROH2AA6NES4 1674 aa16.77■□□□□ 0.28
LITAF-216ENST00000574848 C3P01024 1663 aa16.76■□□□□ 0.27
LITAF-216ENST00000574848 A2MP01023 1474 aa16.76■□□□□ 0.27
LITAF-216ENST00000574848 MYT1LQ9UL68 1186 aa16.76■□□□□ 0.27
LITAF-216ENST00000574848 ZNF644Q9H582 1327 aaPredicted RBP16.75■□□□□ 0.27
LITAF-216ENST00000574848 CNTLNQ9NXG0 1405 aa16.75■□□□□ 0.27
LITAF-216ENST00000574848 MYOM3Q5VTT5 1437 aa16.71■□□□□ 0.27
LITAF-216ENST00000574848 MIA2Q96PC5 1412 aa16.71■□□□□ 0.27
LITAF-216ENST00000574848 MAST1Q9Y2H9 1570 aa16.71■□□□□ 0.27
LITAF-216ENST00000574848 KANK4Q5T7N3 995 aaPredicted RBP16.69■□□□□ 0.26
LITAF-216ENST00000574848 RSPH4AQ5TD94 716 aa16.69■□□□□ 0.26
LITAF-216ENST00000574848 FAM135AQ9P2D6 1515 aa16.69■□□□□ 0.26
LITAF-216ENST00000574848 SETD1BQ9UPS6 1966 aaKnown RBP16.68■□□□□ 0.26
LITAF-216ENST00000574848 CLTCQ00610 1675 aaKnown RBP16.67■□□□□ 0.26
LITAF-216ENST00000574848 NPATQ14207 1427 aa16.66■□□□□ 0.26
LITAF-216ENST00000574848 UHRF1BP1Q6BDS2 1440 aa16.66■□□□□ 0.26
LITAF-216ENST00000574848 DHX29Q7Z478 1369 aaKnown RBP16.65■□□□□ 0.26
LITAF-216ENST00000574848 CEBPAP49715 358 aaPredicted RBP16.65■□□□□ 0.26
LITAF-216ENST00000574848 CROCC2H7BZ55 1655 aa16.64■□□□□ 0.25
LITAF-216ENST00000574848 SHANK2Q9UPX8 1470 aa16.62■□□□□ 0.25
LITAF-216ENST00000574848 PLPPR3Q6T4P5 718 aa16.62■□□□□ 0.25
LITAF-216ENST00000574848 ESF1Q9H501 851 aaKnown RBP16.62■□□□□ 0.25
LITAF-216ENST00000574848 PPP6R1Q9UPN7 881 aa16.62■□□□□ 0.25
LITAF-216ENST00000574848 RNF17Q9BXT8 1623 aaKnown RBP16.62■□□□□ 0.25
LITAF-216ENST00000574848 PTPN23Q9H3S7 1636 aa16.62■□□□□ 0.25
LITAF-216ENST00000574848 EIF2AK4Q9P2K8 1649 aaKnown RBP16.62■□□□□ 0.25
LITAF-216ENST00000574848 ZNF142P52746 1687 aaPredicted RBP16.62■□□□□ 0.25
LITAF-216ENST00000574848 HSPA2P54652 639 aa16.61■□□□□ 0.25
LITAF-216ENST00000574848 TCOF1Q13428 1488 aaKnown RBP16.61■□□□□ 0.25
LITAF-216ENST00000574848 KDM5DQ9BY66 1539 aa16.6■□□□□ 0.25
LITAF-216ENST00000574848 ZMYM3Q14202 1370 aa16.6■□□□□ 0.25
LITAF-216ENST00000574848 MYO3AQ8NEV4 1616 aa16.59■□□□□ 0.25
LITAF-216ENST00000574848 STRCQ7RTU9 1775 aa16.59■□□□□ 0.25
LITAF-216ENST00000574848 PTPRKQ15262 1439 aa16.58■□□□□ 0.24
LITAF-216ENST00000574848 FGD6Q6ZV73 1430 aa16.58■□□□□ 0.24
LITAF-216ENST00000574848 DNMT1P26358 1616 aaKnown RBP16.58■□□□□ 0.24
LITAF-216ENST00000574848 APLP2Q06481 763 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms