RNA–Protein interactions for RNA: ENST00000574848.5

LITAF-216, Transcript of lipopolysaccharide induced TNF factor, humanhuman

TSL 4

Gene LITAF, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-216ENST00000574848 NISCHQ9Y2I1 1504 aa26.32■■□□□ 1.8
LITAF-216ENST00000574848 CCDC180Q9P1Z9 1646 aa23.6■■□□□ 1.37
LITAF-216ENST00000574848 ABCC9O60706 1549 aa23.16■■□□□ 1.3
LITAF-216ENST00000574848 RB1CC1Q8TDY2 1594 aa22.26■■□□□ 1.15
LITAF-216ENST00000574848 NACADO15069 1562 aa22.2■■□□□ 1.14
LITAF-216ENST00000574848 MYO15BQ96JP2 1530 aa22.05■■□□□ 1.12
LITAF-216ENST00000574848 ZCCHC6Q5VYS8 1495 aaKnown RBP21.91■■□□□ 1.1
LITAF-216ENST00000574848 DCAF1Q9Y4B6 1507 aa21.85■■□□□ 1.09
LITAF-216ENST00000574848 DCAF8L2P0C7V8 631 aa21.8■■□□□ 1.08
LITAF-216ENST00000574848 UNC13AQ9UPW8 1703 aa21.79■■□□□ 1.08
LITAF-216ENST00000574848 BICRAQ9NZM4 1560 aa21.62■■□□□ 1.05
LITAF-216ENST00000574848 PABPN1Q86U42 306 aaKnown RBP eCLIP21.51■■□□□ 1.03
LITAF-216ENST00000574848 SHROOM4Q9ULL8 1493 aa21.45■■□□□ 1.03
LITAF-216ENST00000574848 DNAJC5BQ9UF47 199 aa21.43■■□□□ 1.02
LITAF-216ENST00000574848 SCRIBQ14160 1630 aa21.4■■□□□ 1.02
LITAF-216ENST00000574848 EIF4G1Q04637 1599 aaKnown RBP21.05■□□□□ 0.96
LITAF-216ENST00000574848 CC2D2AQ9P2K1 1620 aa21■□□□□ 0.95
LITAF-216ENST00000574848 CECR2Q9BXF3 1484 aa20.87■□□□□ 0.93
LITAF-216ENST00000574848 SMARCA4P51532 1647 aa20.49■□□□□ 0.87
LITAF-216ENST00000574848 NCAPD3P42695 1498 aa20.46■□□□□ 0.87
LITAF-216ENST00000574848 BAZ1AQ9NRL2 1556 aaPredicted RBP20.43■□□□□ 0.86
LITAF-216ENST00000574848 ATAD2BQ9ULI0 1458 aa20.42■□□□□ 0.86
LITAF-216ENST00000574848 SMARCA2P51531 1590 aa20.41■□□□□ 0.86
LITAF-216ENST00000574848 HMGXB3Q12766 1538 aa20.39■□□□□ 0.85
LITAF-216ENST00000574848 PEG3Q9GZU2 1588 aa20.36■□□□□ 0.85
LITAF-216ENST00000574848 MROH2BQ7Z745 1585 aa20.25■□□□□ 0.83
LITAF-216ENST00000574848 BAZ1BQ9UIG0 1483 aaKnown RBP20.22■□□□□ 0.83
LITAF-216ENST00000574848 WIZO95785 1651 aa20.02■□□□□ 0.8
LITAF-216ENST00000574848 LAMC3Q9Y6N6 1575 aa19.99■□□□□ 0.79
LITAF-216ENST00000574848 NESP48681 1621 aa19.98■□□□□ 0.79
LITAF-216ENST00000574848 ERCC6Q03468 1493 aa19.98■□□□□ 0.79
LITAF-216ENST00000574848 CUX2O14529 1486 aa19.95■□□□□ 0.78
LITAF-216ENST00000574848 RSF1Q96T23 1441 aaPredicted RBP19.92■□□□□ 0.78
LITAF-216ENST00000574848 THOC2Q8NI27 1593 aaKnown RBP19.85■□□□□ 0.77
LITAF-216ENST00000574848 TOP2AP11388 1531 aaKnown RBP19.84■□□□□ 0.77
LITAF-216ENST00000574848 KIF21AQ7Z4S6 1674 aa19.81■□□□□ 0.76
LITAF-216ENST00000574848 CADPSQ9ULU8 1353 aa19.8■□□□□ 0.76
LITAF-216ENST00000574848 PDS5BQ9NTI5 1447 aa19.78■□□□□ 0.76
LITAF-216ENST00000574848 CFTRP13569 1480 aa19.68■□□□□ 0.74
LITAF-216ENST00000574848 MRC2Q9UBG0 1479 aa19.63■□□□□ 0.73
LITAF-216ENST00000574848 WDR62O43379 1518 aa19.62■□□□□ 0.73
LITAF-216ENST00000574848 CEP164Q9UPV0 1460 aa19.6■□□□□ 0.73
LITAF-216ENST00000574848 FANCD2Q9BXW9 1451 aa19.59■□□□□ 0.73
LITAF-216ENST00000574848 PRDM2Q13029 1718 aa19.59■□□□□ 0.73
LITAF-216ENST00000574848 CCDC88BA6NC98 1476 aa19.54■□□□□ 0.72
LITAF-216ENST00000574848 DNAJC5Q9H3Z4 198 aa19.52■□□□□ 0.72
LITAF-216ENST00000574848 URB2Q14146 1524 aaKnown RBP19.43■□□□□ 0.7
LITAF-216ENST00000574848 TOPBP1Q92547 1522 aa19.26■□□□□ 0.67
LITAF-216ENST00000574848 ABCC8Q09428 1581 aa19.26■□□□□ 0.67
LITAF-216ENST00000574848 DNMBPQ6XZF7 1577 aa19.25■□□□□ 0.67
LITAF-216ENST00000574848 IFT140Q96RY7 1462 aa19.21■□□□□ 0.67
LITAF-216ENST00000574848 TARBP1Q13395 1621 aaKnown RBP19.11■□□□□ 0.65
LITAF-216ENST00000574848 ZNF608Q9ULD9 1512 aaPredicted RBP19.1■□□□□ 0.65
LITAF-216ENST00000574848 EIF4G3O43432 1585 aaKnown RBP19.09■□□□□ 0.65
LITAF-216ENST00000574848 POLA1P09884 1462 aaPredicted RBP19.09■□□□□ 0.65
LITAF-216ENST00000574848 SUPT5HO00267 1087 aaKnown RBP19.03■□□□□ 0.64
LITAF-216ENST00000574848 CUX1P39880 1505 aa19.03■□□□□ 0.64
LITAF-216ENST00000574848 WDR97A6NE52 1622 aa19.01■□□□□ 0.63
LITAF-216ENST00000574848 FGD5Q6ZNL6 1462 aa18.98■□□□□ 0.63
LITAF-216ENST00000574848 RAD54L2Q9Y4B4 1467 aa18.95■□□□□ 0.62
LITAF-216ENST00000574848 OSCARQ8IYS5 282 aa18.94■□□□□ 0.62
LITAF-216ENST00000574848 SOGA1O94964 1423 aa18.93■□□□□ 0.62
LITAF-216ENST00000574848 AQRO60306 1485 aaKnown RBP eCLIP18.93■□□□□ 0.62
LITAF-216ENST00000574848 CHD1O14646 1710 aa18.88■□□□□ 0.61
LITAF-216ENST00000574848 BIVM-ERCC5R4GMW8 1640 aa18.85■□□□□ 0.61
LITAF-216ENST00000574848 TDRD9Q8NDG6 1382 aaKnown RBP18.83■□□□□ 0.61
LITAF-216ENST00000574848 ABCA10Q8WWZ4 1543 aa18.83■□□□□ 0.6
LITAF-216ENST00000574848 TOP2BQ02880 1626 aa18.82■□□□□ 0.6
LITAF-216ENST00000574848 ABCA5Q8WWZ7 1642 aa18.82■□□□□ 0.6
LITAF-216ENST00000574848 MAGI1Q96QZ7 1491 aaPredicted RBP18.81■□□□□ 0.6
LITAF-216ENST00000574848 GRIN2BQ13224 1484 aa18.8■□□□□ 0.6
LITAF-216ENST00000574848 SNAPC4Q5SXM2 1469 aa18.8■□□□□ 0.6
LITAF-216ENST00000574848 PBRM1Q86U86 1689 aa18.79■□□□□ 0.6
LITAF-216ENST00000574848 SYNJ1O43426 1573 aa18.79■□□□□ 0.6
LITAF-216ENST00000574848 WRNQ14191 1432 aaPredicted RBP eCLIP18.78■□□□□ 0.6
LITAF-216ENST00000574848 RIMBP3CA6NJZ7 1639 aa18.78■□□□□ 0.6
LITAF-216ENST00000574848 RIMBP3BA6NNM3 1639 aa18.78■□□□□ 0.6
LITAF-216ENST00000574848 RIMBP3Q9UFD9 1639 aa18.78■□□□□ 0.6
LITAF-216ENST00000574848 GAPVD1Q14C86 1478 aa18.75■□□□□ 0.59
LITAF-216ENST00000574848 ARHGEF11O15085 1522 aa18.74■□□□□ 0.59
LITAF-216ENST00000574848 SYNJ2O15056 1496 aa18.71■□□□□ 0.59
LITAF-216ENST00000574848 CLASP1Q7Z460 1538 aa18.7■□□□□ 0.58
LITAF-216ENST00000574848 TRIM41Q8WV44 630 aa18.66■□□□□ 0.58
LITAF-216ENST00000574848 ADAMTS12P58397 1594 aa18.64■□□□□ 0.57
LITAF-216ENST00000574848 FBLN2P98095 1184 aa18.63■□□□□ 0.57
LITAF-216ENST00000574848 ERICH3Q5RHP9 1530 aa18.61■□□□□ 0.57
LITAF-216ENST00000574848 CHMP7Q8WUX9 453 aaPredicted RBP18.6■□□□□ 0.57
LITAF-216ENST00000574848 ARAP1Q96P48 1450 aa18.58■□□□□ 0.56
LITAF-216ENST00000574848 GRIN2AQ12879 1464 aa18.57■□□□□ 0.56
LITAF-216ENST00000574848 FHAD1B1AJZ9 1412 aa18.54■□□□□ 0.56
LITAF-216ENST00000574848 NUP160Q12769 1436 aa18.52■□□□□ 0.56
LITAF-216ENST00000574848 CEP170Q5SW79 1584 aa18.51■□□□□ 0.55
LITAF-216ENST00000574848 SHROOM2Q13796 1616 aa18.45■□□□□ 0.54
LITAF-216ENST00000574848 CYB5RLQ6IPT4 315 aa18.43■□□□□ 0.54
LITAF-216ENST00000574848 CUL7Q14999 1698 aa18.41■□□□□ 0.54
LITAF-216ENST00000574848 KIF27Q86VH2 1401 aa18.4■□□□□ 0.54
LITAF-216ENST00000574848 RUSC2Q8N2Y8 1516 aa18.39■□□□□ 0.53
LITAF-216ENST00000574848 ERCC6L2Q5T890 1561 aa18.36■□□□□ 0.53
LITAF-216ENST00000574848 IGF1RP08069 1367 aa18.33■□□□□ 0.53
LITAF-216ENST00000574848 KIAA0586Q9BVV6 1533 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms