RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 DISP1Q96F81 1524 aa14.88□□□□□ -0.03
CLK3-226ENST00000569406 EHBP1L1Q8N3D4 1523 aa14.87□□□□□ -0.03
CLK3-226ENST00000569406 KCNH8Q96L42 1107 aa14.87□□□□□ -0.03
CLK3-226ENST00000569406 PTPN23Q9H3S7 1636 aa14.86□□□□□ -0.03
CLK3-226ENST00000569406 MYOM3Q5VTT5 1437 aa14.85□□□□□ -0.03
CLK3-226ENST00000569406 EPRSP07814 1512 aaKnown RBP14.85□□□□□ -0.03
CLK3-226ENST00000569406 FAM50AQ14320 339 aaKnown RBP14.84□□□□□ -0.03
CLK3-226ENST00000569406 CDK13Q14004 1512 aaKnown RBP14.84□□□□□ -0.03
CLK3-226ENST00000569406 HECW1Q76N89 1606 aa14.84□□□□□ -0.03
CLK3-226ENST00000569406 ATP1B4Q9UN42 357 aaPredicted RBP14.84□□□□□ -0.03
CLK3-226ENST00000569406 HFM1A2PYH4 1435 aa14.84□□□□□ -0.03
CLK3-226ENST00000569406 DENND4BO75064 1496 aaPredicted RBP14.83□□□□□ -0.03
CLK3-226ENST00000569406 KIAA0556O60303 1618 aa14.83□□□□□ -0.03
CLK3-226ENST00000569406 TCOF1Q13428 1488 aaKnown RBP14.83□□□□□ -0.04
CLK3-226ENST00000569406 NAIPQ13075 1403 aa14.82□□□□□ -0.04
CLK3-226ENST00000569406 KDM5BQ9UGL1 1544 aa14.81□□□□□ -0.04
CLK3-226ENST00000569406 CCDC18Q5T9S5 1454 aa14.81□□□□□ -0.04
CLK3-226ENST00000569406 MTUS2Q5JR59 1369 aa14.81□□□□□ -0.04
CLK3-226ENST00000569406 NEFMP07197 916 aa14.81□□□□□ -0.04
CLK3-226ENST00000569406 KDM6BO15054 1643 aa14.81□□□□□ -0.04
CLK3-226ENST00000569406 GRIN2AQ12879 1464 aa14.8□□□□□ -0.04
CLK3-226ENST00000569406 CEP170Q5SW79 1584 aa14.8□□□□□ -0.04
CLK3-226ENST00000569406 KIAA0586Q9BVV6 1533 aa14.8□□□□□ -0.04
CLK3-226ENST00000569406 IRX6P78412 446 aaPredicted RBP14.8□□□□□ -0.04
CLK3-226ENST00000569406 SIN3AQ96ST3 1273 aa14.8□□□□□ -0.04
CLK3-226ENST00000569406 NUP153P49790 1475 aaKnown RBP14.77□□□□□ -0.04
CLK3-226ENST00000569406 GCC2Q8IWJ2 1684 aa14.77□□□□□ -0.05
CLK3-226ENST00000569406 HSP90AA2PQ14568 343 aaPredicted RBP14.77□□□□□ -0.05
CLK3-226ENST00000569406 ZBTB47Q9UFB7 747 aaPredicted RBP14.76□□□□□ -0.05
CLK3-226ENST00000569406 C11orf95C9JLR9 678 aaPredicted RBP14.75□□□□□ -0.05
CLK3-226ENST00000569406 UACAQ9BZF9 1416 aa14.73□□□□□ -0.05
CLK3-226ENST00000569406 TRIM52Q96A61 297 aa14.73□□□□□ -0.05
CLK3-226ENST00000569406 RAPGEF6Q8TEU7 1601 aa14.72□□□□□ -0.05
CLK3-226ENST00000569406 MAGI1Q96QZ7 1491 aaPredicted RBP14.72□□□□□ -0.05
CLK3-226ENST00000569406 TAF7LQ5H9L4 462 aa14.71□□□□□ -0.05
CLK3-226ENST00000569406 ANP32AP39687 249 aaKnown RBP14.7□□□□□ -0.06
CLK3-226ENST00000569406 PAXIP1Q6ZW49 1069 aaPredicted RBP14.7□□□□□ -0.06
CLK3-226ENST00000569406 LAS1LQ9Y4W2 734 aaKnown RBP14.69□□□□□ -0.06
CLK3-226ENST00000569406 SYNJ2O15056 1496 aa14.69□□□□□ -0.06
CLK3-226ENST00000569406 NUP160Q12769 1436 aa14.69□□□□□ -0.06
CLK3-226ENST00000569406 AKNAQ7Z591 1439 aa14.68□□□□□ -0.06
CLK3-226ENST00000569406 MIA2Q96PC5 1412 aa14.68□□□□□ -0.06
CLK3-226ENST00000569406 ERCC6Q03468 1493 aa14.66□□□□□ -0.06
CLK3-226ENST00000569406 PPP1R15AO75807 674 aaPredicted RBP14.66□□□□□ -0.06
CLK3-226ENST00000569406 PLB1Q6P1J6 1458 aa14.65□□□□□ -0.06
CLK3-226ENST00000569406 DNMT1P26358 1616 aaKnown RBP14.65□□□□□ -0.06
CLK3-226ENST00000569406 WASHC2AQ641Q2 1341 aa14.65□□□□□ -0.06
CLK3-226ENST00000569406 IPO9Q96P70 1041 aaKnown RBP14.64□□□□□ -0.07
CLK3-226ENST00000569406 ADCY10Q96PN6 1610 aa14.64□□□□□ -0.07
CLK3-226ENST00000569406 KIF14Q15058 1648 aa14.64□□□□□ -0.07
CLK3-226ENST00000569406 WASHC2CQ9Y4E1 1318 aa14.63□□□□□ -0.07
CLK3-226ENST00000569406 ARID3CA6NKF2 412 aa14.62□□□□□ -0.07
CLK3-226ENST00000569406 ABCC5O15440 1437 aa14.61□□□□□ -0.07
CLK3-226ENST00000569406 NAP1L5Q96NT1 182 aaPredicted RBP14.61□□□□□ -0.07
CLK3-226ENST00000569406 HSP90AA1P07900 732 aaKnown RBP14.6□□□□□ -0.07
CLK3-226ENST00000569406 ZNF644Q9H582 1327 aaPredicted RBP14.6□□□□□ -0.07
CLK3-226ENST00000569406 DAPK1P53355 1430 aa14.6□□□□□ -0.07
CLK3-226ENST00000569406 PRG4Q92954 1404 aaPredicted RBP14.6□□□□□ -0.07
CLK3-226ENST00000569406 ABCA8O94911 1581 aa14.6□□□□□ -0.07
CLK3-226ENST00000569406 RRP9O43818 475 aaKnown RBP14.59□□□□□ -0.07
CLK3-226ENST00000569406 FAM43AQ8N2R8 423 aa14.58□□□□□ -0.07
CLK3-226ENST00000569406 RRP7BPQ9NSQ0 103 aa14.58□□□□□ -0.08
CLK3-226ENST00000569406 CHMP4BQ9H444 224 aaKnown RBP14.58□□□□□ -0.08
CLK3-226ENST00000569406 CROCC2H7BZ55 1655 aa14.58□□□□□ -0.08
CLK3-226ENST00000569406 NCBP3Q53F19 620 aaKnown RBP14.57□□□□□ -0.08
CLK3-226ENST00000569406 GSE1Q14687 1217 aa14.57□□□□□ -0.08
CLK3-226ENST00000569406 CHIC2Q9UKJ5 165 aa14.57□□□□□ -0.08
CLK3-226ENST00000569406 BBXQ8WY36 941 aaPredicted RBP14.56□□□□□ -0.08
CLK3-226ENST00000569406 NAP1L2Q9ULW6 460 aaPredicted RBP14.56□□□□□ -0.08
CLK3-226ENST00000569406 ROCK1Q13464 1354 aa14.56□□□□□ -0.08
CLK3-226ENST00000569406 GPATCH8Q9UKJ3 1502 aaKnown RBP14.56□□□□□ -0.08
CLK3-226ENST00000569406 RGS3P49796 1198 aa14.56□□□□□ -0.08
CLK3-226ENST00000569406 TROQ12816 1431 aaPredicted RBP14.56□□□□□ -0.08
CLK3-226ENST00000569406 CDC42BPAQ5VT25 1732 aa14.55□□□□□ -0.08
CLK3-226ENST00000569406 USP35Q9P2H5 1018 aa14.54□□□□□ -0.08
CLK3-226ENST00000569406 B4GALNT3Q6L9W6 998 aa14.54□□□□□ -0.08
CLK3-226ENST00000569406 NPM2Q86SE8 214 aaKnown RBP14.53□□□□□ -0.08
CLK3-226ENST00000569406 HIRIP3Q9BW71 556 aaPredicted RBP14.53□□□□□ -0.08
CLK3-226ENST00000569406 CAMSAP2Q08AD1 1489 aa14.53□□□□□ -0.08
CLK3-226ENST00000569406 ABCC10Q5T3U5 1492 aa14.53□□□□□ -0.08
CLK3-226ENST00000569406 ARID4BQ4LE39 1312 aaPredicted RBP14.53□□□□□ -0.08
CLK3-226ENST00000569406 DHX37Q8IY37 1157 aaKnown RBP14.52□□□□□ -0.08
CLK3-226ENST00000569406 ITSN2Q9NZM3 1697 aa14.52□□□□□ -0.08
CLK3-226ENST00000569406 JPH4Q96JJ6 628 aa14.52□□□□□ -0.09
CLK3-226ENST00000569406 CHMP7Q8WUX9 453 aaPredicted RBP14.52□□□□□ -0.09
CLK3-226ENST00000569406 ATP10BO94823 1461 aa14.51□□□□□ -0.09
CLK3-226ENST00000569406 ADGBQ8N7X0 1667 aa14.51□□□□□ -0.09
CLK3-226ENST00000569406 CNGB1Q14028 1251 aaPredicted RBP14.5□□□□□ -0.09
CLK3-226ENST00000569406 PZPP20742 1482 aa14.5□□□□□ -0.09
CLK3-226ENST00000569406 CHD1O14646 1710 aa14.49□□□□□ -0.09
CLK3-226ENST00000569406 ADGRL2O95490 1459 aa14.49□□□□□ -0.09
CLK3-226ENST00000569406 TEX14Q8IWB6 1497 aa14.49□□□□□ -0.09
CLK3-226ENST00000569406 ANKRD30BQ9BXX2 1392 aa14.49□□□□□ -0.09
CLK3-226ENST00000569406 SHROOM2Q13796 1616 aa14.48□□□□□ -0.09
CLK3-226ENST00000569406 DDX10Q13206 875 aaKnown RBP14.48□□□□□ -0.09
CLK3-226ENST00000569406 PPP4R2Q9NY27 417 aa14.48□□□□□ -0.09
CLK3-226ENST00000569406 NCOA1Q15788 1441 aa14.48□□□□□ -0.09
CLK3-226ENST00000569406 FRAT1Q92837 279 aaPredicted RBP14.48□□□□□ -0.09
CLK3-226ENST00000569406 MPHOSPH9Q99550 1183 aa14.48□□□□□ -0.09
CLK3-226ENST00000569406 TONSLQ96HA7 1378 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms