RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 CDC42BPBQ9Y5S2 1711 aa19.11■□□□□ 0.65
SF3B3-208ENST00000567250 ARHGAP5Q13017 1502 aa19.1■□□□□ 0.65
SF3B3-208ENST00000567250 FANCAO15360 1455 aa19.09■□□□□ 0.65
SF3B3-208ENST00000567250 PLCH2O75038 1416 aa19.09■□□□□ 0.65
SF3B3-208ENST00000567250 PHLDB1Q86UU1 1377 aa19.09■□□□□ 0.65
SF3B3-208ENST00000567250 NCOA2Q15596 1464 aa19.06■□□□□ 0.64
SF3B3-208ENST00000567250 CCNB3Q8WWL7 1395 aa19.04■□□□□ 0.64
SF3B3-208ENST00000567250 AKNAQ7Z591 1439 aa19.01■□□□□ 0.63
SF3B3-208ENST00000567250 GPATCH8Q9UKJ3 1502 aaKnown RBP19.01■□□□□ 0.63
SF3B3-208ENST00000567250 ADGRL1O94910 1474 aa19.01■□□□□ 0.63
SF3B3-208ENST00000567250 EFCAB2Q5VUJ9 269 aa18.99■□□□□ 0.63
SF3B3-208ENST00000567250 RICTORQ6R327 1708 aa18.99■□□□□ 0.63
SF3B3-208ENST00000567250 ABCC1P33527 1531 aa18.99■□□□□ 0.63
SF3B3-208ENST00000567250 SAMD9LQ8IVG5 1584 aa18.98■□□□□ 0.63
SF3B3-208ENST00000567250 KANK4Q5T7N3 995 aaPredicted RBP18.97■□□□□ 0.63
SF3B3-208ENST00000567250 DENND4BO75064 1496 aaPredicted RBP18.97■□□□□ 0.63
SF3B3-208ENST00000567250 PLEKHH2Q8IVE3 1493 aa18.96■□□□□ 0.63
SF3B3-208ENST00000567250 FRMPD1Q5SYB0 1578 aa18.95■□□□□ 0.62
SF3B3-208ENST00000567250 COL17A1Q9UMD9 1497 aaPredicted RBP18.94■□□□□ 0.62
SF3B3-208ENST00000567250 MYOM3Q5VTT5 1437 aa18.93■□□□□ 0.62
SF3B3-208ENST00000567250 CFDP1Q9UEE9 299 aaPredicted RBP18.93■□□□□ 0.62
SF3B3-208ENST00000567250 ZMYM4Q5VZL5 1548 aa18.93■□□□□ 0.62
SF3B3-208ENST00000567250 POGZQ7Z3K3 1410 aa18.92■□□□□ 0.62
SF3B3-208ENST00000567250 ZNF518AQ6AHZ1 1483 aa18.92■□□□□ 0.62
SF3B3-208ENST00000567250 SYCP2Q9BX26 1530 aa18.92■□□□□ 0.62
SF3B3-208ENST00000567250 SCAPERQ9BY12 1400 aa18.91■□□□□ 0.62
SF3B3-208ENST00000567250 MIA2Q96PC5 1412 aa18.91■□□□□ 0.62
SF3B3-208ENST00000567250 CAMSAP2Q08AD1 1489 aa18.9■□□□□ 0.62
SF3B3-208ENST00000567250 KDM5CP41229 1560 aa18.89■□□□□ 0.62
SF3B3-208ENST00000567250 KIAA1107Q9UPP5 1409 aa18.88■□□□□ 0.61
SF3B3-208ENST00000567250 HECW2Q9P2P5 1572 aa18.88■□□□□ 0.61
SF3B3-208ENST00000567250 ARHGEF40Q8TER5 1519 aa18.87■□□□□ 0.61
SF3B3-208ENST00000567250 PTPN23Q9H3S7 1636 aa18.87■□□□□ 0.61
SF3B3-208ENST00000567250 ZNF777Q9ULD5 760 aaPredicted RBP18.87■□□□□ 0.61
SF3B3-208ENST00000567250 MAGI2Q86UL8 1455 aa18.85■□□□□ 0.61
SF3B3-208ENST00000567250 ZFYVE16Q7Z3T8 1539 aa18.84■□□□□ 0.61
SF3B3-208ENST00000567250 ARHGEF12Q9NZN5 1544 aa18.84■□□□□ 0.61
SF3B3-208ENST00000567250 ARHGEF5Q12774 1597 aa18.84■□□□□ 0.61
SF3B3-208ENST00000567250 FGD6Q6ZV73 1430 aa18.83■□□□□ 0.61
SF3B3-208ENST00000567250 RAPGEF3O95398 923 aa18.82■□□□□ 0.6
SF3B3-208ENST00000567250 FOXD1Q16676 465 aa18.81■□□□□ 0.6
SF3B3-208ENST00000567250 CCDC141Q6ZP82 1450 aa18.81■□□□□ 0.6
SF3B3-208ENST00000567250 INO80Q9ULG1 1556 aaPredicted RBP18.81■□□□□ 0.6
SF3B3-208ENST00000567250 CROCC2H7BZ55 1655 aa18.8■□□□□ 0.6
SF3B3-208ENST00000567250 TCOF1Q13428 1488 aaKnown RBP18.8■□□□□ 0.6
SF3B3-208ENST00000567250 TRAPPC8Q9Y2L5 1435 aa18.8■□□□□ 0.6
SF3B3-208ENST00000567250 KIDINS220Q9ULH0 1771 aa18.78■□□□□ 0.6
SF3B3-208ENST00000567250 MBD5Q9P267 1494 aa18.78■□□□□ 0.6
SF3B3-208ENST00000567250 MLH3Q9UHC1 1453 aa18.78■□□□□ 0.6
SF3B3-208ENST00000567250 ATP7AQ04656 1500 aa18.78■□□□□ 0.6
SF3B3-208ENST00000567250 DNMT1P26358 1616 aaKnown RBP18.78■□□□□ 0.6
SF3B3-208ENST00000567250 ABCA6Q8N139 1617 aa18.77■□□□□ 0.6
SF3B3-208ENST00000567250 DIP2CQ9Y2E4 1556 aa18.76■□□□□ 0.59
SF3B3-208ENST00000567250 ZNF644Q9H582 1327 aaPredicted RBP18.75■□□□□ 0.59
SF3B3-208ENST00000567250 RSPH4AQ5TD94 716 aa18.75■□□□□ 0.59
SF3B3-208ENST00000567250 MAST1Q9Y2H9 1570 aa18.75■□□□□ 0.59
SF3B3-208ENST00000567250 ADGBQ8N7X0 1667 aa18.75■□□□□ 0.59
SF3B3-208ENST00000567250 HNRNPMP52272 730 aaKnown RBP eCLIP18.74■□□□□ 0.599e-13■■■□□ 17.4
SF3B3-208ENST00000567250 REREQ9P2R6 1566 aa18.73■□□□□ 0.59
SF3B3-208ENST00000567250 AFAP1Q8N556 730 aa18.73■□□□□ 0.59
SF3B3-208ENST00000567250 SHANK2Q9UPX8 1470 aa18.72■□□□□ 0.59
SF3B3-208ENST00000567250 MYT1LQ9UL68 1186 aa18.72■□□□□ 0.59
SF3B3-208ENST00000567250 YEATS2Q9ULM3 1422 aa18.72■□□□□ 0.59
SF3B3-208ENST00000567250 SPAG9O60271 1321 aaKnown RBP18.72■□□□□ 0.59
SF3B3-208ENST00000567250 PPARGC1BQ86YN6 1023 aaKnown RBP18.71■□□□□ 0.59
SF3B3-208ENST00000567250 RTEL1-TNFRSF6BF6WH68 1400 aa18.71■□□□□ 0.59
SF3B3-208ENST00000567250 C9orf84Q5VXU9 1444 aa18.71■□□□□ 0.59
SF3B3-208ENST00000567250 PLXNC1O60486 1568 aa18.7■□□□□ 0.58
SF3B3-208ENST00000567250 ATP10AO60312 1499 aa18.7■□□□□ 0.58
SF3B3-208ENST00000567250 DAPK1P53355 1430 aa18.68■□□□□ 0.58
SF3B3-208ENST00000567250 TSPY4P0CV99 314 aa18.67■□□□□ 0.58
SF3B3-208ENST00000567250 TSPY10P0CW01 314 aa18.67■□□□□ 0.58
SF3B3-208ENST00000567250 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.67■□□□□ 0.58
SF3B3-208ENST00000567250 RRBP1Q9P2E9 1410 aaKnown RBP18.66■□□□□ 0.58
SF3B3-208ENST00000567250 BCORL1Q5H9F3 1711 aa18.64■□□□□ 0.57
SF3B3-208ENST00000567250 SIGLEC1Q9BZZ2 1709 aa18.64■□□□□ 0.57
SF3B3-208ENST00000567250 FAM50AQ14320 339 aaKnown RBP18.64■□□□□ 0.57
SF3B3-208ENST00000567250 ABCC5O15440 1437 aa18.64■□□□□ 0.57
SF3B3-208ENST00000567250 AGLP35573 1532 aa18.63■□□□□ 0.57
SF3B3-208ENST00000567250 A2MP01023 1474 aa18.62■□□□□ 0.57
SF3B3-208ENST00000567250 EIF2AK4Q9P2K8 1649 aaKnown RBP18.6■□□□□ 0.57
SF3B3-208ENST00000567250 ADGRL2O95490 1459 aa18.59■□□□□ 0.57
SF3B3-208ENST00000567250 FER1L4A9Z1Z3 1794 aa18.58■□□□□ 0.57
SF3B3-208ENST00000567250 ARID4BQ4LE39 1312 aaPredicted RBP18.58■□□□□ 0.57
SF3B3-208ENST00000567250 DUOX2Q9NRD8 1548 aa18.58■□□□□ 0.56
SF3B3-208ENST00000567250 ADAMTSL3P82987 1691 aa18.57■□□□□ 0.56
SF3B3-208ENST00000567250 ANKRD30AQ9BXX3 1397 aa18.56■□□□□ 0.56
SF3B3-208ENST00000567250 MADDQ8WXG6 1647 aa18.54■□□□□ 0.56
SF3B3-208ENST00000567250 KIF15Q9NS87 1388 aa18.54■□□□□ 0.56
SF3B3-208ENST00000567250 DHX29Q7Z478 1369 aaKnown RBP18.53■□□□□ 0.56
SF3B3-208ENST00000567250 ERBINQ96RT1 1412 aa18.52■□□□□ 0.56
SF3B3-208ENST00000567250 FAM135AQ9P2D6 1515 aa18.51■□□□□ 0.55
SF3B3-208ENST00000567250 RNF17Q9BXT8 1623 aaKnown RBP18.51■□□□□ 0.55
SF3B3-208ENST00000567250 RIMS1Q86UR5 1692 aaKnown RBP18.5■□□□□ 0.55
SF3B3-208ENST00000567250 NCOA1Q15788 1441 aa18.5■□□□□ 0.55
SF3B3-208ENST00000567250 ROCK1Q13464 1354 aa18.5■□□□□ 0.55
SF3B3-208ENST00000567250 GCC2Q8IWJ2 1684 aa18.5■□□□□ 0.55
SF3B3-208ENST00000567250 MROH2AA6NES4 1674 aa18.48■□□□□ 0.55
SF3B3-208ENST00000567250 ZC3H13Q5T200 1668 aaKnown RBP18.48■□□□□ 0.55
SF3B3-208ENST00000567250 CHIC2Q9UKJ5 165 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms