RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ZFYVE16Q7Z3T8 1539 aa27.7■■■□□ 2.02
CLN3-211ENST00000564091 HECW1Q76N89 1606 aa27.7■■■□□ 2.02
CLN3-211ENST00000564091 MAGI2Q86UL8 1455 aa27.7■■■□□ 2.02
CLN3-211ENST00000564091 TROQ12816 1431 aaPredicted RBP27.67■■■□□ 2.02
CLN3-211ENST00000564091 AFAP1Q8N556 730 aa27.63■■■□□ 2.01
CLN3-211ENST00000564091 LMTK3Q96Q04 1460 aa27.63■■■□□ 2.01
CLN3-211ENST00000564091 HSPA2P54652 639 aa27.62■■■□□ 2.01
CLN3-211ENST00000564091 PCF11O94913 1555 aaKnown RBP27.61■■■□□ 2.01
CLN3-211ENST00000564091 CLIP1P30622 1438 aa27.6■■■□□ 2.01
CLN3-211ENST00000564091 KIF14Q15058 1648 aa27.59■■■□□ 2.01
CLN3-211ENST00000564091 RIMS1Q86UR5 1692 aaKnown RBP27.59■■■□□ 2.01
CLN3-211ENST00000564091 ATP10AO60312 1499 aa27.58■■■□□ 2.01
CLN3-211ENST00000564091 MYT1LQ9UL68 1186 aa27.57■■■□□ 2
CLN3-211ENST00000564091 SIGLEC1Q9BZZ2 1709 aa27.57■■■□□ 2
CLN3-211ENST00000564091 ARHGAP5Q13017 1502 aa27.56■■■□□ 2
CLN3-211ENST00000564091 FBXO41Q8TF61 875 aa27.55■■■□□ 2
CLN3-211ENST00000564091 C9orf84Q5VXU9 1444 aa27.54■■■□□ 2
CLN3-211ENST00000564091 CASKIN1Q8WXD9 1431 aa27.53■■■□□ 2
CLN3-211ENST00000564091 ZNF518AQ6AHZ1 1483 aa27.51■■■□□ 2
CLN3-211ENST00000564091 CEBPAP49715 358 aaPredicted RBP27.5■■□□□ 1.99
CLN3-211ENST00000564091 MYO5CQ9NQX4 1742 aa27.5■■□□□ 1.99
CLN3-211ENST00000564091 CCDC18Q5T9S5 1454 aa27.45■■□□□ 1.99
CLN3-211ENST00000564091 ARHGEF12Q9NZN5 1544 aa27.45■■□□□ 1.98
CLN3-211ENST00000564091 TRAPPC8Q9Y2L5 1435 aa27.44■■□□□ 1.98
CLN3-211ENST00000564091 LRRIQ1Q96JM4 1722 aa27.43■■□□□ 1.98
CLN3-211ENST00000564091 KDM5CP41229 1560 aa27.42■■□□□ 1.98
CLN3-211ENST00000564091 ZNF777Q9ULD5 760 aaPredicted RBP27.39■■□□□ 1.98
CLN3-211ENST00000564091 MLH3Q9UHC1 1453 aa27.38■■□□□ 1.97
CLN3-211ENST00000564091 FYCO1Q9BQS8 1478 aa27.36■■□□□ 1.97
CLN3-211ENST00000564091 FER1L4A9Z1Z3 1794 aa27.35■■□□□ 1.97
CLN3-211ENST00000564091 DIP2CQ9Y2E4 1556 aa27.34■■□□□ 1.97
CLN3-211ENST00000564091 ABCC1P33527 1531 aa27.33■■□□□ 1.97
CLN3-211ENST00000564091 CDC42BPBQ9Y5S2 1711 aa27.33■■□□□ 1.96
CLN3-211ENST00000564091 PREX2Q70Z35 1606 aa27.3■■□□□ 1.96
CLN3-211ENST00000564091 HNRNPMP52272 730 aaKnown RBP eCLIP27.3■■□□□ 1.96
CLN3-211ENST00000564091 ESF1Q9H501 851 aaKnown RBP27.3■■□□□ 1.96
CLN3-211ENST00000564091 GPATCH8Q9UKJ3 1502 aaKnown RBP27.28■■□□□ 1.96
CLN3-211ENST00000564091 ABCA6Q8N139 1617 aa27.27■■□□□ 1.96
CLN3-211ENST00000564091 CERKQ8TCT0 537 aa27.27■■□□□ 1.96
CLN3-211ENST00000564091 REREQ9P2R6 1566 aa27.26■■□□□ 1.96
CLN3-211ENST00000564091 CFDP1Q9UEE9 299 aaPredicted RBP27.26■■□□□ 1.95
CLN3-211ENST00000564091 SPAG9O60271 1321 aaKnown RBP27.25■■□□□ 1.95
CLN3-211ENST00000564091 AGLP35573 1532 aa27.24■■□□□ 1.95
CLN3-211ENST00000564091 UHRF1BP1Q6BDS2 1440 aa27.24■■□□□ 1.95
CLN3-211ENST00000564091 CCNB3Q8WWL7 1395 aa27.21■■□□□ 1.95
CLN3-211ENST00000564091 ITSN2Q9NZM3 1697 aa27.21■■□□□ 1.95
CLN3-211ENST00000564091 MTUS2Q5JR59 1369 aa27.2■■□□□ 1.94
CLN3-211ENST00000564091 CDC42BPAQ5VT25 1732 aa27.19■■□□□ 1.94
CLN3-211ENST00000564091 SAMD9LQ8IVG5 1584 aa27.18■■□□□ 1.94
CLN3-211ENST00000564091 SYCP2Q9BX26 1530 aa27.18■■□□□ 1.94
CLN3-211ENST00000564091 DMRT2Q9Y5R5 561 aa27.18■■□□□ 1.94
CLN3-211ENST00000564091 KIDINS220Q9ULH0 1771 aa27.17■■□□□ 1.94
CLN3-211ENST00000564091 KIAA1107Q9UPP5 1409 aa27.16■■□□□ 1.94
CLN3-211ENST00000564091 PREX1Q8TCU6 1659 aa27.16■■□□□ 1.94
CLN3-211ENST00000564091 ZNF644Q9H582 1327 aaPredicted RBP27.15■■□□□ 1.94
CLN3-211ENST00000564091 CNTLNQ9NXG0 1405 aa27.14■■□□□ 1.93
CLN3-211ENST00000564091 PLEKHH2Q8IVE3 1493 aa27.11■■□□□ 1.93
CLN3-211ENST00000564091 ZMYM3Q14202 1370 aa27.09■■□□□ 1.93
CLN3-211ENST00000564091 GGT6Q6P531 493 aa27.08■■□□□ 1.93
CLN3-211ENST00000564091 C3P01024 1663 aa27.07■■□□□ 1.92
CLN3-211ENST00000564091 CEP162Q5TB80 1403 aa27.06■■□□□ 1.92
CLN3-211ENST00000564091 A2MP01023 1474 aa27.06■■□□□ 1.92
CLN3-211ENST00000564091 ATP7AQ04656 1500 aa27.06■■□□□ 1.92
CLN3-211ENST00000564091 SETD1BQ9UPS6 1966 aaKnown RBP27.05■■□□□ 1.92
CLN3-211ENST00000564091 STRCQ7RTU9 1775 aa27.02■■□□□ 1.92
CLN3-211ENST00000564091 PTPRTO14522 1441 aa27.02■■□□□ 1.92
CLN3-211ENST00000564091 NPATQ14207 1427 aa27■■□□□ 1.91
CLN3-211ENST00000564091 MBD5Q9P267 1494 aa27■■□□□ 1.91
CLN3-211ENST00000564091 TIAM1Q13009 1591 aa26.98■■□□□ 1.91
CLN3-211ENST00000564091 EHBP1L1Q8N3D4 1523 aa26.98■■□□□ 1.91
CLN3-211ENST00000564091 NCOA1Q15788 1441 aa26.98■■□□□ 1.91
CLN3-211ENST00000564091 INO80Q9ULG1 1556 aaPredicted RBP26.97■■□□□ 1.91
CLN3-211ENST00000564091 PLXNC1O60486 1568 aa26.96■■□□□ 1.91
CLN3-211ENST00000564091 SUPT6HQ7KZ85 1726 aaKnown RBP26.95■■□□□ 1.9
CLN3-211ENST00000564091 NCKAP5LQ9HCH0 1330 aa26.94■■□□□ 1.9
CLN3-211ENST00000564091 PPP6R1Q9UPN7 881 aa26.93■■□□□ 1.9
CLN3-211ENST00000564091 LOC105371045A0A1W2PR82 267 aa26.92■■□□□ 1.9
CLN3-211ENST00000564091 PTPRKQ15262 1439 aa26.91■■□□□ 1.9
CLN3-211ENST00000564091 DHX29Q7Z478 1369 aaKnown RBP26.91■■□□□ 1.9
CLN3-211ENST00000564091 RTEL1-TNFRSF6BF6WH68 1400 aa26.9■■□□□ 1.9
CLN3-211ENST00000564091 NCOA2Q15596 1464 aa26.9■■□□□ 1.9
CLN3-211ENST00000564091 CAMSAP1Q5T5Y3 1602 aa26.88■■□□□ 1.89
CLN3-211ENST00000564091 KIF3BO15066 747 aa26.88■■□□□ 1.89
CLN3-211ENST00000564091 MROH2AA6NES4 1674 aa26.87■■□□□ 1.89
CLN3-211ENST00000564091 CLTCQ00610 1675 aaKnown RBP26.85■■□□□ 1.89
CLN3-211ENST00000564091 RSPH4AQ5TD94 716 aa26.85■■□□□ 1.89
CLN3-211ENST00000564091 LTBP4Q8N2S1 1624 aa26.83■■□□□ 1.89
CLN3-211ENST00000564091 CCDC141Q6ZP82 1450 aa26.83■■□□□ 1.89
CLN3-211ENST00000564091 PKD2Q13563 968 aa26.83■■□□□ 1.89
CLN3-211ENST00000564091 CAMSAP2Q08AD1 1489 aa26.82■■□□□ 1.88
CLN3-211ENST00000564091 FBXO31Q5XUX0 539 aaPredicted RBP26.82■■□□□ 1.88
CLN3-211ENST00000564091 ZNF335Q9H4Z2 1342 aaPredicted RBP26.82■■□□□ 1.88
CLN3-211ENST00000564091 TSPY4P0CV99 314 aa26.79■■□□□ 1.88
CLN3-211ENST00000564091 TSPY10P0CW01 314 aa26.79■■□□□ 1.88
CLN3-211ENST00000564091 ADGBQ8N7X0 1667 aa26.79■■□□□ 1.88
CLN3-211ENST00000564091 WASHC2CQ9Y4E1 1318 aa26.77■■□□□ 1.88
CLN3-211ENST00000564091 PLA2R1Q13018 1463 aa26.76■■□□□ 1.87
CLN3-211ENST00000564091 VPS8Q8N3P4 1428 aa26.76■■□□□ 1.87
CLN3-211ENST00000564091 KANK4Q5T7N3 995 aaPredicted RBP26.76■■□□□ 1.87
CLN3-211ENST00000564091 CEP170BQ9Y4F5 1589 aaPredicted RBP26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms