RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 MYO5CQ9NQX4 1742 aa28.09■■■□□ 2.09
VPS9D1-203ENST00000563798 CCDC18Q5T9S5 1454 aa28.09■■■□□ 2.09
VPS9D1-203ENST00000563798 PTPRMP28827 1452 aa28.08■■■□□ 2.09
VPS9D1-203ENST00000563798 PCF11O94913 1555 aaKnown RBP28.07■■■□□ 2.08
VPS9D1-203ENST00000563798 ZFYVE16Q7Z3T8 1539 aa28.06■■■□□ 2.08
VPS9D1-203ENST00000563798 ARID4BQ4LE39 1312 aaPredicted RBP28.05■■■□□ 2.08
VPS9D1-203ENST00000563798 YEATS2Q9ULM3 1422 aa28.04■■■□□ 2.08
VPS9D1-203ENST00000563798 FYCO1Q9BQS8 1478 aa28.03■■■□□ 2.08
VPS9D1-203ENST00000563798 MADDQ8WXG6 1647 aa28■■■□□ 2.07
VPS9D1-203ENST00000563798 ARHGAP5Q13017 1502 aa27.98■■■□□ 2.07
VPS9D1-203ENST00000563798 ZNF518AQ6AHZ1 1483 aa27.95■■■□□ 2.07
VPS9D1-203ENST00000563798 SIGLEC1Q9BZZ2 1709 aa27.95■■■□□ 2.06
VPS9D1-203ENST00000563798 ATP10AO60312 1499 aa27.94■■■□□ 2.06
VPS9D1-203ENST00000563798 KDM5CP41229 1560 aa27.94■■■□□ 2.06
VPS9D1-203ENST00000563798 CDC42BPBQ9Y5S2 1711 aa27.93■■■□□ 2.06
VPS9D1-203ENST00000563798 ILDR1Q86SU0 546 aaPredicted RBP27.92■■■□□ 2.06
VPS9D1-203ENST00000563798 PREX2Q70Z35 1606 aa27.92■■■□□ 2.06
VPS9D1-203ENST00000563798 C9orf84Q5VXU9 1444 aa27.9■■■□□ 2.06
VPS9D1-203ENST00000563798 AFAP1Q8N556 730 aa27.88■■■□□ 2.05
VPS9D1-203ENST00000563798 RIMS1Q86UR5 1692 aaKnown RBP27.87■■■□□ 2.05
VPS9D1-203ENST00000563798 ABCC1P33527 1531 aa27.85■■■□□ 2.05
VPS9D1-203ENST00000563798 MLH3Q9UHC1 1453 aa27.84■■■□□ 2.05
VPS9D1-203ENST00000563798 ARHGEF12Q9NZN5 1544 aa27.83■■■□□ 2.05
VPS9D1-203ENST00000563798 CDC42BPAQ5VT25 1732 aa27.83■■■□□ 2.05
VPS9D1-203ENST00000563798 REREQ9P2R6 1566 aa27.81■■■□□ 2.04
VPS9D1-203ENST00000563798 TRAPPC8Q9Y2L5 1435 aa27.8■■■□□ 2.04
VPS9D1-203ENST00000563798 LMTK3Q96Q04 1460 aa27.79■■■□□ 2.04
VPS9D1-203ENST00000563798 DIP2CQ9Y2E4 1556 aa27.78■■■□□ 2.04
VPS9D1-203ENST00000563798 GPATCH8Q9UKJ3 1502 aaKnown RBP27.78■■■□□ 2.04
VPS9D1-203ENST00000563798 ITSN2Q9NZM3 1697 aa27.78■■■□□ 2.04
VPS9D1-203ENST00000563798 MLECQ14165 292 aa27.77■■■□□ 2.04
VPS9D1-203ENST00000563798 FER1L4A9Z1Z3 1794 aa27.76■■■□□ 2.03
VPS9D1-203ENST00000563798 CEP162Q5TB80 1403 aa27.75■■■□□ 2.03
VPS9D1-203ENST00000563798 ABCA6Q8N139 1617 aa27.72■■■□□ 2.03
VPS9D1-203ENST00000563798 AGLP35573 1532 aa27.72■■■□□ 2.03
VPS9D1-203ENST00000563798 SAMD9LQ8IVG5 1584 aa27.71■■■□□ 2.03
VPS9D1-203ENST00000563798 KIAA1107Q9UPP5 1409 aa27.7■■■□□ 2.03
VPS9D1-203ENST00000563798 MTUS2Q5JR59 1369 aa27.7■■■□□ 2.02
VPS9D1-203ENST00000563798 MYT1LQ9UL68 1186 aa27.69■■■□□ 2.02
VPS9D1-203ENST00000563798 KIDINS220Q9ULH0 1771 aa27.68■■■□□ 2.02
VPS9D1-203ENST00000563798 CCNB3Q8WWL7 1395 aa27.67■■■□□ 2.02
VPS9D1-203ENST00000563798 PLEKHH2Q8IVE3 1493 aa27.67■■■□□ 2.02
VPS9D1-203ENST00000563798 CFDP1Q9UEE9 299 aaPredicted RBP27.65■■■□□ 2.02
VPS9D1-203ENST00000563798 ZNF777Q9ULD5 760 aaPredicted RBP27.65■■■□□ 2.02
VPS9D1-203ENST00000563798 EHBP1L1Q8N3D4 1523 aa27.64■■■□□ 2.02
VPS9D1-203ENST00000563798 SYCP2Q9BX26 1530 aa27.64■■■□□ 2.02
VPS9D1-203ENST00000563798 HNRNPMP52272 730 aaKnown RBP eCLIP27.61■■■□□ 2.01
VPS9D1-203ENST00000563798 PLPPR3Q6T4P5 718 aa27.6■■■□□ 2.01
VPS9D1-203ENST00000563798 SPAG9O60271 1321 aaKnown RBP27.59■■■□□ 2.01
VPS9D1-203ENST00000563798 TIAM1Q13009 1591 aa27.58■■■□□ 2.01
VPS9D1-203ENST00000563798 HSPA2P54652 639 aa27.57■■■□□ 2
VPS9D1-203ENST00000563798 CEBPAP49715 358 aaPredicted RBP27.56■■■□□ 2
VPS9D1-203ENST00000563798 ATP7AQ04656 1500 aa27.54■■■□□ 2
VPS9D1-203ENST00000563798 INO80Q9ULG1 1556 aaPredicted RBP27.54■■■□□ 2
VPS9D1-203ENST00000563798 PREX1Q8TCU6 1659 aa27.53■■■□□ 2
VPS9D1-203ENST00000563798 MBD5Q9P267 1494 aa27.51■■■□□ 2
VPS9D1-203ENST00000563798 CNTLNQ9NXG0 1405 aa27.51■■□□□ 1.99
VPS9D1-203ENST00000563798 LOC105371045A0A1W2PR82 267 aa27.5■■□□□ 1.99
VPS9D1-203ENST00000563798 SETD1BQ9UPS6 1966 aaKnown RBP27.49■■□□□ 1.99
VPS9D1-203ENST00000563798 PLXNC1O60486 1568 aa27.49■■□□□ 1.99
VPS9D1-203ENST00000563798 ZNF644Q9H582 1327 aaPredicted RBP27.48■■□□□ 1.99
VPS9D1-203ENST00000563798 C3P01024 1663 aa27.48■■□□□ 1.99
VPS9D1-203ENST00000563798 VPS8Q8N3P4 1428 aa27.48■■□□□ 1.99
VPS9D1-203ENST00000563798 NCOA2Q15596 1464 aa27.47■■□□□ 1.99
VPS9D1-203ENST00000563798 ESF1Q9H501 851 aaKnown RBP27.47■■□□□ 1.99
VPS9D1-203ENST00000563798 A2MP01023 1474 aa27.46■■□□□ 1.99
VPS9D1-203ENST00000563798 SUPT6HQ7KZ85 1726 aaKnown RBP27.45■■□□□ 1.99
VPS9D1-203ENST00000563798 RTEL1-TNFRSF6BF6WH68 1400 aa27.45■■□□□ 1.98
VPS9D1-203ENST00000563798 UHRF1BP1Q6BDS2 1440 aa27.45■■□□□ 1.98
VPS9D1-203ENST00000563798 FBXO41Q8TF61 875 aa27.43■■□□□ 1.98
VPS9D1-203ENST00000563798 MROH2AA6NES4 1674 aa27.41■■□□□ 1.98
VPS9D1-203ENST00000563798 MAP3K1Q13233 1512 aa27.4■■□□□ 1.98
VPS9D1-203ENST00000563798 ADGBQ8N7X0 1667 aa27.4■■□□□ 1.98
VPS9D1-203ENST00000563798 RSPH4AQ5TD94 716 aa27.39■■□□□ 1.98
VPS9D1-203ENST00000563798 LRRC9Q6ZRR7 1453 aa27.38■■□□□ 1.97
VPS9D1-203ENST00000563798 PPP6R1Q9UPN7 881 aa27.38■■□□□ 1.97
VPS9D1-203ENST00000563798 NPATQ14207 1427 aa27.38■■□□□ 1.97
VPS9D1-203ENST00000563798 ZMYM3Q14202 1370 aa27.36■■□□□ 1.97
VPS9D1-203ENST00000563798 CAMSAP2Q08AD1 1489 aa27.36■■□□□ 1.97
VPS9D1-203ENST00000563798 CCDC141Q6ZP82 1450 aa27.35■■□□□ 1.97
VPS9D1-203ENST00000563798 DHX29Q7Z478 1369 aaKnown RBP27.34■■□□□ 1.97
VPS9D1-203ENST00000563798 DMRT2Q9Y5R5 561 aa27.33■■□□□ 1.97
VPS9D1-203ENST00000563798 STRCQ7RTU9 1775 aa27.32■■□□□ 1.96
VPS9D1-203ENST00000563798 ARHGEF5Q12774 1597 aa27.31■■□□□ 1.96
VPS9D1-203ENST00000563798 GGT6Q6P531 493 aa27.28■■□□□ 1.96
VPS9D1-203ENST00000563798 CLTCQ00610 1675 aaKnown RBP27.27■■□□□ 1.96
VPS9D1-203ENST00000563798 KANK4Q5T7N3 995 aaPredicted RBP27.26■■□□□ 1.95
VPS9D1-203ENST00000563798 PTPRTO14522 1441 aa27.24■■□□□ 1.95
VPS9D1-203ENST00000563798 PTPRKQ15262 1439 aa27.24■■□□□ 1.95
VPS9D1-203ENST00000563798 CERKQ8TCT0 537 aa27.23■■□□□ 1.95
VPS9D1-203ENST00000563798 MIA2Q96PC5 1412 aa27.23■■□□□ 1.95
VPS9D1-203ENST00000563798 FAM135AQ9P2D6 1515 aa27.21■■□□□ 1.95
VPS9D1-203ENST00000563798 TSPY4P0CV99 314 aa27.21■■□□□ 1.95
VPS9D1-203ENST00000563798 TSPY10P0CW01 314 aa27.21■■□□□ 1.95
VPS9D1-203ENST00000563798 NCOA1Q15788 1441 aa27.21■■□□□ 1.95
VPS9D1-203ENST00000563798 MYOM3Q5VTT5 1437 aa27.19■■□□□ 1.94
VPS9D1-203ENST00000563798 MAST1Q9Y2H9 1570 aa27.18■■□□□ 1.94
VPS9D1-203ENST00000563798 KIF3BO15066 747 aa27.17■■□□□ 1.94
VPS9D1-203ENST00000563798 ZNF142P52746 1687 aaPredicted RBP27.16■■□□□ 1.94
VPS9D1-203ENST00000563798 CAMSAP1Q5T5Y3 1602 aa27.14■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms