RNA–Protein interactions for RNA: ENST00000563416.3

LINC00254-201, long intergenic non-protein coding RNA 254, humanhuman

TSL 3 BASIC

Gene LINC00254, Length 662 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00254-201ENST00000563416 HAP1P54257 671 aaPredicted RBP12.44□□□□□ -0.42
LINC00254-201ENST00000563416 PDE4AP27815 886 aa12.42□□□□□ -0.42
LINC00254-201ENST00000563416 TSHZ2Q9NRE2 1034 aa12.4□□□□□ -0.42
LINC00254-201ENST00000563416 GPHNQ9NQX3 736 aaPredicted RBP12.39□□□□□ -0.43
LINC00254-201ENST00000563416 TMEM92Q6UXU6 159 aa12.38□□□□□ -0.43
LINC00254-201ENST00000563416 CADPS2Q86UW7 1296 aa12.38□□□□□ -0.43
LINC00254-201ENST00000563416 CRISPLD2Q9H0B8 497 aa12.38□□□□□ -0.43
LINC00254-201ENST00000563416 C2orf72A6NCS6 295 aa12.37□□□□□ -0.43
LINC00254-201ENST00000563416 KIF3CO14782 793 aa12.36□□□□□ -0.43
LINC00254-201ENST00000563416 NCKAP5LQ9HCH0 1330 aa12.35□□□□□ -0.43
LINC00254-201ENST00000563416 LARP6Q9BRS8 491 aaKnown RBP12.34□□□□□ -0.43
LINC00254-201ENST00000563416 SNPHO15079 494 aa12.32□□□□□ -0.44
LINC00254-201ENST00000563416 FOXK1P85037 733 aa12.32□□□□□ -0.44
LINC00254-201ENST00000563416 DDX27Q96GQ7 796 aaKnown RBP12.32□□□□□ -0.44
LINC00254-201ENST00000563416 WDR70Q9NW82 654 aa12.31□□□□□ -0.44
LINC00254-201ENST00000563416 MFSD10Q14728 455 aa12.29□□□□□ -0.44
LINC00254-201ENST00000563416 PPP1R15BQ5SWA1 713 aa12.29□□□□□ -0.44
LINC00254-201ENST00000563416 DSG2Q14126 1118 aa12.28□□□□□ -0.44
LINC00254-201ENST00000563416 PLPP6Q8IY26 295 aa12.27□□□□□ -0.45
LINC00254-201ENST00000563416 DOK7Q18PE1 504 aa12.26□□□□□ -0.45
LINC00254-201ENST00000563416 VSIG10Q8N0Z9 540 aa12.25□□□□□ -0.45
LINC00254-201ENST00000563416 RIMBP2O15034 1052 aa12.24□□□□□ -0.45
LINC00254-201ENST00000563416 ZNF710Q8N1W2 664 aa12.2□□□□□ -0.46
LINC00254-201ENST00000563416 SLC24A1O60721 1099 aa12.19□□□□□ -0.46
LINC00254-201ENST00000563416 SLC34A2O95436 690 aa12.18□□□□□ -0.46
LINC00254-201ENST00000563416 HOXB3P14651 431 aaPredicted RBP12.17□□□□□ -0.46
LINC00254-201ENST00000563416 E2F4Q16254 413 aa12.17□□□□□ -0.46
LINC00254-201ENST00000563416 ZSWIM6Q9HCJ5 1215 aa12.17□□□□□ -0.46
LINC00254-201ENST00000563416 TBC1D12O60347 775 aa12.14□□□□□ -0.47
LINC00254-201ENST00000563416 CAMK2BQ13554 666 aa12.14□□□□□ -0.47
LINC00254-201ENST00000563416 P3H3Q8IVL6 736 aa12.13□□□□□ -0.47
LINC00254-201ENST00000563416 KDM2AQ9Y2K7 1162 aa12.13□□□□□ -0.47
LINC00254-201ENST00000563416 PTCD2Q8WV60 388 aaKnown RBP12.12□□□□□ -0.47
LINC00254-201ENST00000563416 FAM163AQ96GL9 167 aaPredicted RBP12.12□□□□□ -0.47
LINC00254-201ENST00000563416 UPF1Q92900 1129 aaKnown RBP eCLIP12.1□□□□□ -0.47
LINC00254-201ENST00000563416 OXER1Q8TDS5 423 aa12.09□□□□□ -0.47
LINC00254-201ENST00000563416 PCDHGA4Q9Y5G9 962 aa12.09□□□□□ -0.47
LINC00254-201ENST00000563416 MAP3K9P80192 1104 aa12.08□□□□□ -0.48
LINC00254-201ENST00000563416 EMILIN3Q9NT22 766 aa12.08□□□□□ -0.48
LINC00254-201ENST00000563416 ZNF316A6NFI3 1004 aaPredicted RBP12.07□□□□□ -0.48
LINC00254-201ENST00000563416 ST18O60284 1047 aa12.07□□□□□ -0.48
LINC00254-201ENST00000563416 HOXB1P14653 301 aaPredicted RBP12.06□□□□□ -0.48
LINC00254-201ENST00000563416 GPR153Q6NV75 609 aa12.06□□□□□ -0.48
LINC00254-201ENST00000563416 ARSIQ5FYB1 569 aa12.05□□□□□ -0.48
LINC00254-201ENST00000563416 KCNV2Q8TDN2 545 aa12.04□□□□□ -0.48
LINC00254-201ENST00000563416 ARIH1Q9Y4X5 557 aaPredicted RBP12.03□□□□□ -0.48
LINC00254-201ENST00000563416 DPYSL4O14531 572 aa12.02□□□□□ -0.49
LINC00254-201ENST00000563416 ARHGEF1Q92888 912 aaKnown RBP12.02□□□□□ -0.49
LINC00254-201ENST00000563416 NUDT7P0C024 238 aa12□□□□□ -0.49
LINC00254-201ENST00000563416 SPDYE16A6NNV3 312 aaPredicted RBP11.98□□□□□ -0.49
LINC00254-201ENST00000563416 EVI5O60447 810 aa11.98□□□□□ -0.49
LINC00254-201ENST00000563416 EMP3P54852 163 aa11.98□□□□□ -0.49
LINC00254-201ENST00000563416 KHSRPQ92945 711 aaKnown RBP eCLIP11.98□□□□□ -0.49
LINC00254-201ENST00000563416 LCE2DQ5TA82 110 aaPredicted RBP11.96□□□□□ -0.49
LINC00254-201ENST00000563416 PDIA6Q15084 440 aa11.95□□□□□ -0.5
LINC00254-201ENST00000563416 MARVELD3Q96A59 401 aa11.95□□□□□ -0.5
LINC00254-201ENST00000563416 ERBB3P21860 1342 aa11.92□□□□□ -0.5
LINC00254-201ENST00000563416 KDM4FA0A1W2PPD8 638 aa11.92□□□□□ -0.5
LINC00254-201ENST00000563416 PSDA5PKW4 1024 aaPredicted RBP11.92□□□□□ -0.5
LINC00254-201ENST00000563416 ANO8Q9HCE9 1232 aaPredicted RBP11.92□□□□□ -0.5
LINC00254-201ENST00000563416 LHX6Q9UPM6 363 aa11.91□□□□□ -0.5
LINC00254-201ENST00000563416 FAM205CA6NFA0 338 aa11.89□□□□□ -0.51
LINC00254-201ENST00000563416 PTGER2P43116 358 aa11.86□□□□□ -0.51
LINC00254-201ENST00000563416 VARS2Q5ST30 1063 aaKnown RBP11.86□□□□□ -0.51
LINC00254-201ENST00000563416 PPP4R3BQ5MIZ7 849 aa11.85□□□□□ -0.51
LINC00254-201ENST00000563416 POTEGQ6S5H5 508 aa11.85□□□□□ -0.51
LINC00254-201ENST00000563416 JPH4Q96JJ6 628 aa11.85□□□□□ -0.51
LINC00254-201ENST00000563416 POTEMA6NI47 508 aa11.84□□□□□ -0.51
LINC00254-201ENST00000563416 NBR1Q14596 966 aa11.84□□□□□ -0.51
LINC00254-201ENST00000563416 ZNF454Q8N9F8 522 aa11.84□□□□□ -0.51
LINC00254-201ENST00000563416 HS3ST6Q96QI5 342 aa11.84□□□□□ -0.51
LINC00254-201ENST00000563416 PHF14O94880 888 aa11.83□□□□□ -0.52
LINC00254-201ENST00000563416 FOSBP53539 338 aa11.82□□□□□ -0.52
LINC00254-201ENST00000563416 DDX12PQ92771 950 aa11.82□□□□□ -0.52
LINC00254-201ENST00000563416 EPAS1Q99814 870 aa11.82□□□□□ -0.52
LINC00254-201ENST00000563416 GRXCR2A6NFK2 248 aa11.79□□□□□ -0.52
LINC00254-201ENST00000563416 SEMA3EO15041 775 aa11.79□□□□□ -0.52
LINC00254-201ENST00000563416 TYW1BQ6NUM6 668 aa11.79□□□□□ -0.52
LINC00254-201ENST00000563416 FBXW7Q969H0 707 aa11.79□□□□□ -0.52
LINC00254-201ENST00000563416 SMYD5Q6GMV2 418 aa11.78□□□□□ -0.52
LINC00254-201ENST00000563416 ZNF687Q8N1G0 1237 aa11.78□□□□□ -0.52
LINC00254-201ENST00000563416 ZDHHC16Q969W1 377 aa11.78□□□□□ -0.52
LINC00254-201ENST00000563416 PCDHGA10Q9Y5H3 936 aa11.78□□□□□ -0.52
LINC00254-201ENST00000563416 TULP1O00294 542 aaPredicted RBP11.77□□□□□ -0.53
LINC00254-201ENST00000563416 KCNH8Q96L42 1107 aa11.76□□□□□ -0.53
LINC00254-201ENST00000563416 TESPA1A2RU30 521 aaPredicted RBP11.75□□□□□ -0.53
LINC00254-201ENST00000563416 MLLT3P42568 568 aaPredicted RBP11.74□□□□□ -0.53
LINC00254-201ENST00000563416 POTEB3A0JP26 581 aa11.73□□□□□ -0.53
LINC00254-201ENST00000563416 PBX2P40425 430 aa11.73□□□□□ -0.53
LINC00254-201ENST00000563416 POTEBQ6S5H4 581 aa11.73□□□□□ -0.53
LINC00254-201ENST00000563416 BCL2L12Q9HB09 334 aa11.73□□□□□ -0.53
LINC00254-201ENST00000563416 PTPREP23469 700 aa11.71□□□□□ -0.53
LINC00254-201ENST00000563416 EN1Q05925 392 aaPredicted RBP11.71□□□□□ -0.53
LINC00254-201ENST00000563416 BCANQ96GW7 911 aa11.71□□□□□ -0.53
LINC00254-201ENST00000563416 MAP3K7O43318 606 aa11.7□□□□□ -0.54
LINC00254-201ENST00000563416 OSBPP22059 807 aa11.7□□□□□ -0.54
LINC00254-201ENST00000563416 ADAM33Q9BZ11 813 aa11.7□□□□□ -0.54
LINC00254-201ENST00000563416 PCDH10Q9P2E7 1040 aa11.7□□□□□ -0.54
LINC00254-201ENST00000563416 ARHGAP33O14559 1287 aa11.69□□□□□ -0.54
LINC00254-201ENST00000563416 CDAN1Q8IWY9 1227 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms