RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 MADDQ8WXG6 1647 aa25.74■■□□□ 1.71
CLK3-211ENST00000563297 KIF14Q15058 1648 aa25.74■■□□□ 1.71
CLK3-211ENST00000563297 MYO5CQ9NQX4 1742 aa25.73■■□□□ 1.71
CLK3-211ENST00000563297 ZFYVE16Q7Z3T8 1539 aa25.73■■□□□ 1.71
CLK3-211ENST00000563297 POGZQ7Z3K3 1410 aa25.72■■□□□ 1.71
CLK3-211ENST00000563297 CLIP1P30622 1438 aa25.71■■□□□ 1.71
CLK3-211ENST00000563297 CASKIN1Q8WXD9 1431 aa25.69■■□□□ 1.7
CLK3-211ENST00000563297 SIGLEC1Q9BZZ2 1709 aa25.68■■□□□ 1.7
CLK3-211ENST00000563297 RIMS1Q86UR5 1692 aaKnown RBP25.65■■□□□ 1.7
CLK3-211ENST00000563297 MLECQ14165 292 aa25.65■■□□□ 1.7
CLK3-211ENST00000563297 AFAP1Q8N556 730 aa25.65■■□□□ 1.7
CLK3-211ENST00000563297 ARHGAP5Q13017 1502 aa25.63■■□□□ 1.69
CLK3-211ENST00000563297 ATP10AO60312 1499 aa25.63■■□□□ 1.69
CLK3-211ENST00000563297 PCF11O94913 1555 aaKnown RBP25.63■■□□□ 1.69
CLK3-211ENST00000563297 CCDC18Q5T9S5 1454 aa25.62■■□□□ 1.69
CLK3-211ENST00000563297 CDC42BPBQ9Y5S2 1711 aa25.6■■□□□ 1.69
CLK3-211ENST00000563297 PLPPR3Q6T4P5 718 aa25.59■■□□□ 1.69
CLK3-211ENST00000563297 ZNF518AQ6AHZ1 1483 aa25.59■■□□□ 1.69
CLK3-211ENST00000563297 LMTK3Q96Q04 1460 aa25.57■■□□□ 1.68
CLK3-211ENST00000563297 C9orf84Q5VXU9 1444 aa25.56■■□□□ 1.68
CLK3-211ENST00000563297 FYCO1Q9BQS8 1478 aa25.55■■□□□ 1.68
CLK3-211ENST00000563297 MYT1LQ9UL68 1186 aa25.55■■□□□ 1.68
CLK3-211ENST00000563297 KDM5CP41229 1560 aa25.54■■□□□ 1.68
CLK3-211ENST00000563297 PREX2Q70Z35 1606 aa25.52■■□□□ 1.68
CLK3-211ENST00000563297 ARHGEF12Q9NZN5 1544 aa25.51■■□□□ 1.67
CLK3-211ENST00000563297 FER1L4A9Z1Z3 1794 aa25.51■■□□□ 1.67
CLK3-211ENST00000563297 TRAPPC8Q9Y2L5 1435 aa25.5■■□□□ 1.67
CLK3-211ENST00000563297 HSPA2P54652 639 aa25.49■■□□□ 1.67
CLK3-211ENST00000563297 MLH3Q9UHC1 1453 aa25.48■■□□□ 1.67
CLK3-211ENST00000563297 CDC42BPAQ5VT25 1732 aa25.47■■□□□ 1.67
CLK3-211ENST00000563297 ABCC1P33527 1531 aa25.46■■□□□ 1.67
CLK3-211ENST00000563297 DIP2CQ9Y2E4 1556 aa25.45■■□□□ 1.66
CLK3-211ENST00000563297 CEBPAP49715 358 aaPredicted RBP25.45■■□□□ 1.66
CLK3-211ENST00000563297 ZNF777Q9ULD5 760 aaPredicted RBP25.44■■□□□ 1.66
CLK3-211ENST00000563297 ITSN2Q9NZM3 1697 aa25.42■■□□□ 1.66
CLK3-211ENST00000563297 GPATCH8Q9UKJ3 1502 aaKnown RBP25.42■■□□□ 1.66
CLK3-211ENST00000563297 ABCA6Q8N139 1617 aa25.41■■□□□ 1.66
CLK3-211ENST00000563297 REREQ9P2R6 1566 aa25.4■■□□□ 1.66
CLK3-211ENST00000563297 HNRNPMP52272 730 aaKnown RBP eCLIP25.38■■□□□ 1.654e-10■■■■■ 38
CLK3-211ENST00000563297 FBXO41Q8TF61 875 aa25.38■■□□□ 1.65
CLK3-211ENST00000563297 KIDINS220Q9ULH0 1771 aa25.37■■□□□ 1.65
CLK3-211ENST00000563297 CFDP1Q9UEE9 299 aaPredicted RBP25.36■■□□□ 1.65
CLK3-211ENST00000563297 SAMD9LQ8IVG5 1584 aa25.35■■□□□ 1.65
CLK3-211ENST00000563297 SETD1BQ9UPS6 1966 aaKnown RBP25.35■■□□□ 1.65
CLK3-211ENST00000563297 AGLP35573 1532 aa25.35■■□□□ 1.65
CLK3-211ENST00000563297 MTUS2Q5JR59 1369 aa25.34■■□□□ 1.65
CLK3-211ENST00000563297 CCNB3Q8WWL7 1395 aa25.33■■□□□ 1.65
CLK3-211ENST00000563297 SPAG9O60271 1321 aaKnown RBP25.32■■□□□ 1.64
CLK3-211ENST00000563297 SYCP2Q9BX26 1530 aa25.31■■□□□ 1.64
CLK3-211ENST00000563297 KIAA1107Q9UPP5 1409 aa25.3■■□□□ 1.64
CLK3-211ENST00000563297 ESF1Q9H501 851 aaKnown RBP25.3■■□□□ 1.64
CLK3-211ENST00000563297 PREX1Q8TCU6 1659 aa25.29■■□□□ 1.64
CLK3-211ENST00000563297 CEP162Q5TB80 1403 aa25.29■■□□□ 1.64
CLK3-211ENST00000563297 PLEKHH2Q8IVE3 1493 aa25.27■■□□□ 1.64
CLK3-211ENST00000563297 C3P01024 1663 aa25.24■■□□□ 1.63
CLK3-211ENST00000563297 ZNF644Q9H582 1327 aaPredicted RBP25.24■■□□□ 1.63
CLK3-211ENST00000563297 UHRF1BP1Q6BDS2 1440 aa25.22■■□□□ 1.63
CLK3-211ENST00000563297 CNTLNQ9NXG0 1405 aa25.2■■□□□ 1.63
CLK3-211ENST00000563297 ATP7AQ04656 1500 aa25.2■■□□□ 1.62
CLK3-211ENST00000563297 EHBP1L1Q8N3D4 1523 aa25.2■■□□□ 1.62
CLK3-211ENST00000563297 TIAM1Q13009 1591 aa25.19■■□□□ 1.62
CLK3-211ENST00000563297 SUPT6HQ7KZ85 1726 aaKnown RBP25.18■■□□□ 1.62
CLK3-211ENST00000563297 LOC105371045A0A1W2PR82 267 aa25.18■■□□□ 1.62
CLK3-211ENST00000563297 CERKQ8TCT0 537 aa25.17■■□□□ 1.62
CLK3-211ENST00000563297 STRCQ7RTU9 1775 aa25.16■■□□□ 1.62
CLK3-211ENST00000563297 INO80Q9ULG1 1556 aaPredicted RBP25.16■■□□□ 1.62
CLK3-211ENST00000563297 DMRT2Q9Y5R5 561 aa25.16■■□□□ 1.62
CLK3-211ENST00000563297 A2MP01023 1474 aa25.15■■□□□ 1.62
CLK3-211ENST00000563297 MBD5Q9P267 1494 aa25.15■■□□□ 1.62
CLK3-211ENST00000563297 ZMYM3Q14202 1370 aa25.15■■□□□ 1.62
CLK3-211ENST00000563297 GGT6Q6P531 493 aa25.12■■□□□ 1.61
CLK3-211ENST00000563297 PLXNC1O60486 1568 aa25.12■■□□□ 1.61
CLK3-211ENST00000563297 MROH2AA6NES4 1674 aa25.1■■□□□ 1.61
CLK3-211ENST00000563297 NCOA2Q15596 1464 aa25.09■■□□□ 1.61
CLK3-211ENST00000563297 RTEL1-TNFRSF6BF6WH68 1400 aa25.08■■□□□ 1.61
CLK3-211ENST00000563297 NPATQ14207 1427 aa25.08■■□□□ 1.61
CLK3-211ENST00000563297 PPP6R1Q9UPN7 881 aa25.06■■□□□ 1.6
CLK3-211ENST00000563297 ADGBQ8N7X0 1667 aa25.06■■□□□ 1.6
CLK3-211ENST00000563297 RSPH4AQ5TD94 716 aa25.05■■□□□ 1.6
CLK3-211ENST00000563297 CLTCQ00610 1675 aaKnown RBP25.04■■□□□ 1.6
CLK3-211ENST00000563297 DHX29Q7Z478 1369 aaKnown RBP25.04■■□□□ 1.6
CLK3-211ENST00000563297 PTPRTO14522 1441 aa25.03■■□□□ 1.6
CLK3-211ENST00000563297 VPS8Q8N3P4 1428 aa25.03■■□□□ 1.6
CLK3-211ENST00000563297 CAMSAP2Q08AD1 1489 aa25.01■■□□□ 1.59
CLK3-211ENST00000563297 PTPRKQ15262 1439 aa25■■□□□ 1.59
CLK3-211ENST00000563297 NCOA1Q15788 1441 aa24.99■■□□□ 1.59
CLK3-211ENST00000563297 CCDC141Q6ZP82 1450 aa24.99■■□□□ 1.59
CLK3-211ENST00000563297 LRRC9Q6ZRR7 1453 aa24.98■■□□□ 1.59
CLK3-211ENST00000563297 KIF3BO15066 747 aa24.97■■□□□ 1.59
CLK3-211ENST00000563297 KANK4Q5T7N3 995 aaPredicted RBP24.96■■□□□ 1.59
CLK3-211ENST00000563297 CAMSAP1Q5T5Y3 1602 aa24.95■■□□□ 1.58
CLK3-211ENST00000563297 TSPY4P0CV99 314 aa24.95■■□□□ 1.58
CLK3-211ENST00000563297 TSPY10P0CW01 314 aa24.95■■□□□ 1.58
CLK3-211ENST00000563297 NCKAP5LQ9HCH0 1330 aa24.93■■□□□ 1.58
CLK3-211ENST00000563297 ARHGEF5Q12774 1597 aa24.91■■□□□ 1.58
CLK3-211ENST00000563297 MAP3K1Q13233 1512 aa24.91■■□□□ 1.58
CLK3-211ENST00000563297 MYO3AQ8NEV4 1616 aa24.89■■□□□ 1.57
CLK3-211ENST00000563297 FBXO31Q5XUX0 539 aaPredicted RBP24.88■■□□□ 1.57
CLK3-211ENST00000563297 LTBP4Q8N2S1 1624 aa24.87■■□□□ 1.57
CLK3-211ENST00000563297 PKD2Q13563 968 aa24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms