RNA–Protein interactions for RNA: ENST00000561743.5

USB1-205, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 3 BASIC

Gene USB1, Length 1,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-205ENST00000561743 POGZQ7Z3K3 1410 aa21.94■■□□□ 1.1
USB1-205ENST00000561743 ARHGAP5Q13017 1502 aa21.93■■□□□ 1.1
USB1-205ENST00000561743 PREX2Q70Z35 1606 aa21.93■■□□□ 1.1
USB1-205ENST00000561743 ZFYVE16Q7Z3T8 1539 aa21.93■■□□□ 1.1
USB1-205ENST00000561743 SCAPERQ9BY12 1400 aa21.93■■□□□ 1.1
USB1-205ENST00000561743 SIGLEC1Q9BZZ2 1709 aa21.93■■□□□ 1.1
USB1-205ENST00000561743 CDC42BPAQ5VT25 1732 aa21.91■■□□□ 1.1
USB1-205ENST00000561743 MAGI2Q86UL8 1455 aa21.9■■□□□ 1.1
USB1-205ENST00000561743 EFCAB2Q5VUJ9 269 aa21.9■■□□□ 1.1
USB1-205ENST00000561743 MADDQ8WXG6 1647 aa21.9■■□□□ 1.1
USB1-205ENST00000561743 HECW2Q9P2P5 1572 aa21.9■■□□□ 1.1
USB1-205ENST00000561743 YEATS2Q9ULM3 1422 aa21.89■■□□□ 1.1
USB1-205ENST00000561743 PTPRMP28827 1452 aa21.85■■□□□ 1.09
USB1-205ENST00000561743 KDM5CP41229 1560 aa21.85■■□□□ 1.09
USB1-205ENST00000561743 ARID4BQ4LE39 1312 aaPredicted RBP21.84■■□□□ 1.09
USB1-205ENST00000561743 CEP162Q5TB80 1403 aa21.84■■□□□ 1.09
USB1-205ENST00000561743 ZNF518AQ6AHZ1 1483 aa21.83■■□□□ 1.09
USB1-205ENST00000561743 RIMS1Q86UR5 1692 aaKnown RBP21.83■■□□□ 1.09
USB1-205ENST00000561743 ITSN2Q9NZM3 1697 aa21.83■■□□□ 1.09
USB1-205ENST00000561743 ABCC1P33527 1531 aa21.83■■□□□ 1.09
USB1-205ENST00000561743 ARHGEF12Q9NZN5 1544 aa21.78■■□□□ 1.08
USB1-205ENST00000561743 ATP10AO60312 1499 aa21.77■■□□□ 1.08
USB1-205ENST00000561743 FER1L4A9Z1Z3 1794 aa21.77■■□□□ 1.08
USB1-205ENST00000561743 C9orf84Q5VXU9 1444 aa21.77■■□□□ 1.08
USB1-205ENST00000561743 SAMD9LQ8IVG5 1584 aa21.76■■□□□ 1.07
USB1-205ENST00000561743 AFAP1Q8N556 730 aa21.76■■□□□ 1.07
USB1-205ENST00000561743 DIP2CQ9Y2E4 1556 aa21.75■■□□□ 1.07
USB1-205ENST00000561743 ABCA6Q8N139 1617 aa21.75■■□□□ 1.07
USB1-205ENST00000561743 GPATCH8Q9UKJ3 1502 aaKnown RBP21.75■■□□□ 1.07
USB1-205ENST00000561743 TRAPPC8Q9Y2L5 1435 aa21.73■■□□□ 1.07
USB1-205ENST00000561743 MLH3Q9UHC1 1453 aa21.72■■□□□ 1.07
USB1-205ENST00000561743 EHBP1L1Q8N3D4 1523 aa21.71■■□□□ 1.07
USB1-205ENST00000561743 REREQ9P2R6 1566 aa21.71■■□□□ 1.07
USB1-205ENST00000561743 MTUS2Q5JR59 1369 aa21.71■■□□□ 1.07
USB1-205ENST00000561743 KIDINS220Q9ULH0 1771 aa21.71■■□□□ 1.07
USB1-205ENST00000561743 SYCP2Q9BX26 1530 aa21.7■■□□□ 1.06
USB1-205ENST00000561743 TIAM1Q13009 1591 aa21.69■■□□□ 1.06
USB1-205ENST00000561743 LOC105371045A0A1W2PR82 267 aa21.67■■□□□ 1.06
USB1-205ENST00000561743 MLECQ14165 292 aa21.67■■□□□ 1.06
USB1-205ENST00000561743 CCNB3Q8WWL7 1395 aa21.66■■□□□ 1.06
USB1-205ENST00000561743 MYT1LQ9UL68 1186 aa21.64■■□□□ 1.05
USB1-205ENST00000561743 ZNF777Q9ULD5 760 aaPredicted RBP21.64■■□□□ 1.05
USB1-205ENST00000561743 LMTK3Q96Q04 1460 aa21.64■■□□□ 1.05
USB1-205ENST00000561743 SUPT6HQ7KZ85 1726 aaKnown RBP21.62■■□□□ 1.05
USB1-205ENST00000561743 PLEKHH2Q8IVE3 1493 aa21.62■■□□□ 1.05
USB1-205ENST00000561743 KIAA1107Q9UPP5 1409 aa21.62■■□□□ 1.05
USB1-205ENST00000561743 AGLP35573 1532 aa21.61■■□□□ 1.05
USB1-205ENST00000561743 CFDP1Q9UEE9 299 aaPredicted RBP21.61■■□□□ 1.05
USB1-205ENST00000561743 VPS8Q8N3P4 1428 aa21.61■■□□□ 1.05
USB1-205ENST00000561743 INO80Q9ULG1 1556 aaPredicted RBP21.61■■□□□ 1.05
USB1-205ENST00000561743 HNRNPMP52272 730 aaKnown RBP eCLIP21.58■■□□□ 1.05
USB1-205ENST00000561743 ATP7AQ04656 1500 aa21.58■■□□□ 1.04
USB1-205ENST00000561743 PLPPR3Q6T4P5 718 aa21.57■■□□□ 1.04
USB1-205ENST00000561743 NCOA2Q15596 1464 aa21.56■■□□□ 1.04
USB1-205ENST00000561743 PREX1Q8TCU6 1659 aa21.54■■□□□ 1.04
USB1-205ENST00000561743 SPAG9O60271 1321 aaKnown RBP21.54■■□□□ 1.04
USB1-205ENST00000561743 C3P01024 1663 aa21.53■■□□□ 1.04
USB1-205ENST00000561743 ZNF644Q9H582 1327 aaPredicted RBP21.53■■□□□ 1.04
USB1-205ENST00000561743 PLXNC1O60486 1568 aa21.53■■□□□ 1.04
USB1-205ENST00000561743 MBD5Q9P267 1494 aa21.52■■□□□ 1.03
USB1-205ENST00000561743 ADGBQ8N7X0 1667 aa21.51■■□□□ 1.03
USB1-205ENST00000561743 LRRC9Q6ZRR7 1453 aa21.5■■□□□ 1.03
USB1-205ENST00000561743 MAP3K1Q13233 1512 aa21.49■■□□□ 1.03
USB1-205ENST00000561743 CAMSAP2Q08AD1 1489 aa21.48■■□□□ 1.03
USB1-205ENST00000561743 CEBPAP49715 358 aaPredicted RBP21.48■■□□□ 1.03
USB1-205ENST00000561743 MROH2AA6NES4 1674 aa21.47■■□□□ 1.03
USB1-205ENST00000561743 A2MP01023 1474 aa21.46■■□□□ 1.03
USB1-205ENST00000561743 SETD1BQ9UPS6 1966 aaKnown RBP21.45■■□□□ 1.02
USB1-205ENST00000561743 HSPA2P54652 639 aa21.45■■□□□ 1.02
USB1-205ENST00000561743 CNTLNQ9NXG0 1405 aa21.43■■□□□ 1.02
USB1-205ENST00000561743 CCDC141Q6ZP82 1450 aa21.43■■□□□ 1.02
USB1-205ENST00000561743 RTEL1-TNFRSF6BF6WH68 1400 aa21.42■■□□□ 1.02
USB1-205ENST00000561743 CLTCQ00610 1675 aaKnown RBP21.42■■□□□ 1.02
USB1-205ENST00000561743 ARHGEF5Q12774 1597 aa21.41■■□□□ 1.02
USB1-205ENST00000561743 KANK4Q5T7N3 995 aaPredicted RBP21.4■■□□□ 1.02
USB1-205ENST00000561743 ESF1Q9H501 851 aaKnown RBP21.4■■□□□ 1.02
USB1-205ENST00000561743 ILDR1Q86SU0 546 aaPredicted RBP21.38■■□□□ 1.01
USB1-205ENST00000561743 UHRF1BP1Q6BDS2 1440 aa21.38■■□□□ 1.01
USB1-205ENST00000561743 STRCQ7RTU9 1775 aa21.36■■□□□ 1.01
USB1-205ENST00000561743 MYOM3Q5VTT5 1437 aa21.34■■□□□ 1.01
USB1-205ENST00000561743 RSPH4AQ5TD94 716 aa21.33■■□□□ 1.01
USB1-205ENST00000561743 DHX29Q7Z478 1369 aaKnown RBP21.33■■□□□ 1
USB1-205ENST00000561743 ZMYM3Q14202 1370 aa21.32■■□□□ 1
USB1-205ENST00000561743 MAST1Q9Y2H9 1570 aa21.31■■□□□ 1
USB1-205ENST00000561743 NPATQ14207 1427 aa21.31■■□□□ 1
USB1-205ENST00000561743 MIA2Q96PC5 1412 aa21.31■■□□□ 1
USB1-205ENST00000561743 GGT6Q6P531 493 aa21.3■■□□□ 1
USB1-205ENST00000561743 MYO3AQ8NEV4 1616 aa21.28■■□□□ 1
USB1-205ENST00000561743 ZNF142P52746 1687 aaPredicted RBP21.27■■□□□ 1
USB1-205ENST00000561743 CROCC2H7BZ55 1655 aa21.26■□□□□ 0.99
USB1-205ENST00000561743 PTPRKQ15262 1439 aa21.25■□□□□ 0.99
USB1-205ENST00000561743 PPP6R1Q9UPN7 881 aa21.25■□□□□ 0.99
USB1-205ENST00000561743 PTPN23Q9H3S7 1636 aa21.25■□□□□ 0.99
USB1-205ENST00000561743 FAM135AQ9P2D6 1515 aa21.24■□□□□ 0.99
USB1-205ENST00000561743 TSPY4P0CV99 314 aa21.24■□□□□ 0.99
USB1-205ENST00000561743 TSPY10P0CW01 314 aa21.24■□□□□ 0.99
USB1-205ENST00000561743 APLP2Q06481 763 aa21.24■□□□□ 0.99
USB1-205ENST00000561743 KDM5DQ9BY66 1539 aa21.24■□□□□ 0.99
USB1-205ENST00000561743 RNF17Q9BXT8 1623 aaKnown RBP21.22■□□□□ 0.99
USB1-205ENST00000561743 KIF3BO15066 747 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms