RNA–Protein interactions for RNA: ENST00000561743.5

USB1-205, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 3 BASIC

Gene USB1, Length 1,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-205ENST00000561743 NISCHQ9Y2I1 1504 aa33.64■■■□□ 2.98
USB1-205ENST00000561743 CCDC180Q9P1Z9 1646 aa30.15■■■□□ 2.42
USB1-205ENST00000561743 ABCC9O60706 1549 aa29.8■■■□□ 2.36
USB1-205ENST00000561743 RB1CC1Q8TDY2 1594 aa28.51■■■□□ 2.15
USB1-205ENST00000561743 NACADO15069 1562 aa28.38■■■□□ 2.13
USB1-205ENST00000561743 DCAF8L2P0C7V8 631 aa28.15■■■□□ 2.1
USB1-205ENST00000561743 MYO15BQ96JP2 1530 aa28.08■■■□□ 2.09
USB1-205ENST00000561743 UNC13AQ9UPW8 1703 aa28■■■□□ 2.07
USB1-205ENST00000561743 ZCCHC6Q5VYS8 1495 aaKnown RBP27.95■■■□□ 2.07
USB1-205ENST00000561743 DCAF1Q9Y4B6 1507 aa27.82■■■□□ 2.04
USB1-205ENST00000561743 PABPN1Q86U42 306 aaKnown RBP eCLIP27.72■■■□□ 2.03
USB1-205ENST00000561743 BICRAQ9NZM4 1560 aa27.71■■■□□ 2.03
USB1-205ENST00000561743 DNAJC5BQ9UF47 199 aa27.67■■■□□ 2.02
USB1-205ENST00000561743 SCRIBQ14160 1630 aa27.45■■□□□ 1.99
USB1-205ENST00000561743 SHROOM4Q9ULL8 1493 aa27.32■■□□□ 1.96
USB1-205ENST00000561743 CC2D2AQ9P2K1 1620 aa26.98■■□□□ 1.91
USB1-205ENST00000561743 EIF4G1Q04637 1599 aaKnown RBP26.98■■□□□ 1.91
USB1-205ENST00000561743 CECR2Q9BXF3 1484 aa26.81■■□□□ 1.88
USB1-205ENST00000561743 SMARCA4P51532 1647 aa26.23■■□□□ 1.79
USB1-205ENST00000561743 NCAPD3P42695 1498 aa26.17■■□□□ 1.78
USB1-205ENST00000561743 ATAD2BQ9ULI0 1458 aa26.13■■□□□ 1.77
USB1-205ENST00000561743 BAZ1AQ9NRL2 1556 aaPredicted RBP26.11■■□□□ 1.77
USB1-205ENST00000561743 SMARCA2P51531 1590 aa26.09■■□□□ 1.77
USB1-205ENST00000561743 HMGXB3Q12766 1538 aa26.04■■□□□ 1.76
USB1-205ENST00000561743 PEG3Q9GZU2 1588 aa25.97■■□□□ 1.75
USB1-205ENST00000561743 MROH2BQ7Z745 1585 aa25.93■■□□□ 1.74
USB1-205ENST00000561743 BAZ1BQ9UIG0 1483 aaKnown RBP25.9■■□□□ 1.74
USB1-205ENST00000561743 ERCC6Q03468 1493 aa25.69■■□□□ 1.7
USB1-205ENST00000561743 NESP48681 1621 aa25.69■■□□□ 1.7
USB1-205ENST00000561743 WIZO95785 1651 aa25.68■■□□□ 1.7
USB1-205ENST00000561743 LAMC3Q9Y6N6 1575 aa25.58■■□□□ 1.69
USB1-205ENST00000561743 CUX2O14529 1486 aa25.58■■□□□ 1.69
USB1-205ENST00000561743 RSF1Q96T23 1441 aaPredicted RBP25.46■■□□□ 1.67
USB1-205ENST00000561743 KIF21AQ7Z4S6 1674 aa25.45■■□□□ 1.67
USB1-205ENST00000561743 THOC2Q8NI27 1593 aaKnown RBP25.44■■□□□ 1.66
USB1-205ENST00000561743 CADPSQ9ULU8 1353 aa25.36■■□□□ 1.65
USB1-205ENST00000561743 PDS5BQ9NTI5 1447 aa25.35■■□□□ 1.65
USB1-205ENST00000561743 TOP2AP11388 1531 aaKnown RBP25.34■■□□□ 1.65
USB1-205ENST00000561743 DNAJC5Q9H3Z4 198 aa25.2■■□□□ 1.62
USB1-205ENST00000561743 CFTRP13569 1480 aa25.15■■□□□ 1.62
USB1-205ENST00000561743 MRC2Q9UBG0 1479 aa25.15■■□□□ 1.62
USB1-205ENST00000561743 WDR62O43379 1518 aa25.12■■□□□ 1.61
USB1-205ENST00000561743 CEP164Q9UPV0 1460 aa25.1■■□□□ 1.61
USB1-205ENST00000561743 FANCD2Q9BXW9 1451 aa25.09■■□□□ 1.61
USB1-205ENST00000561743 PRDM2Q13029 1718 aa25.08■■□□□ 1.61
USB1-205ENST00000561743 CCDC88BA6NC98 1476 aa25.02■■□□□ 1.6
USB1-205ENST00000561743 URB2Q14146 1524 aaKnown RBP24.9■■□□□ 1.58
USB1-205ENST00000561743 TOPBP1Q92547 1522 aa24.67■■□□□ 1.54
USB1-205ENST00000561743 DNMBPQ6XZF7 1577 aa24.63■■□□□ 1.53
USB1-205ENST00000561743 ABCC8Q09428 1581 aa24.61■■□□□ 1.53
USB1-205ENST00000561743 IFT140Q96RY7 1462 aa24.58■■□□□ 1.53
USB1-205ENST00000561743 ZNF608Q9ULD9 1512 aaPredicted RBP24.54■■□□□ 1.52
USB1-205ENST00000561743 TARBP1Q13395 1621 aaKnown RBP24.47■■□□□ 1.51
USB1-205ENST00000561743 EIF4G3O43432 1585 aaKnown RBP24.47■■□□□ 1.51
USB1-205ENST00000561743 SUPT5HO00267 1087 aaKnown RBP24.45■■□□□ 1.5
USB1-205ENST00000561743 POLA1P09884 1462 aaPredicted RBP24.43■■□□□ 1.5
USB1-205ENST00000561743 OSCARQ8IYS5 282 aa24.38■■□□□ 1.49
USB1-205ENST00000561743 CUX1P39880 1505 aa24.35■■□□□ 1.49
USB1-205ENST00000561743 RAD54L2Q9Y4B4 1467 aa24.32■■□□□ 1.48
USB1-205ENST00000561743 AQRO60306 1485 aaKnown RBP eCLIP24.32■■□□□ 1.48
USB1-205ENST00000561743 FGD5Q6ZNL6 1462 aa24.32■■□□□ 1.48
USB1-205ENST00000561743 SOGA1O94964 1423 aa24.28■■□□□ 1.48
USB1-205ENST00000561743 CHD1O14646 1710 aa24.27■■□□□ 1.48
USB1-205ENST00000561743 WDR97A6NE52 1622 aa24.24■■□□□ 1.47
USB1-205ENST00000561743 TDRD9Q8NDG6 1382 aaKnown RBP24.19■■□□□ 1.46
USB1-205ENST00000561743 TRIM41Q8WV44 630 aa24.19■■□□□ 1.46
USB1-205ENST00000561743 RIMBP3CA6NJZ7 1639 aa24.16■■□□□ 1.46
USB1-205ENST00000561743 RIMBP3BA6NNM3 1639 aa24.16■■□□□ 1.46
USB1-205ENST00000561743 RIMBP3Q9UFD9 1639 aa24.16■■□□□ 1.46
USB1-205ENST00000561743 SNAPC4Q5SXM2 1469 aa24.11■■□□□ 1.45
USB1-205ENST00000561743 PBRM1Q86U86 1689 aa24.1■■□□□ 1.45
USB1-205ENST00000561743 BIVM-ERCC5R4GMW8 1640 aa24.09■■□□□ 1.45
USB1-205ENST00000561743 ARHGEF11O15085 1522 aa24.08■■□□□ 1.45
USB1-205ENST00000561743 GRIN2BQ13224 1484 aa24.07■■□□□ 1.44
USB1-205ENST00000561743 MAGI1Q96QZ7 1491 aaPredicted RBP24.06■■□□□ 1.44
USB1-205ENST00000561743 TOP2BQ02880 1626 aa24.06■■□□□ 1.44
USB1-205ENST00000561743 ABCA5Q8WWZ7 1642 aa24.06■■□□□ 1.44
USB1-205ENST00000561743 ABCA10Q8WWZ4 1543 aa24.05■■□□□ 1.44
USB1-205ENST00000561743 SYNJ1O43426 1573 aa24.04■■□□□ 1.44
USB1-205ENST00000561743 FBLN2P98095 1184 aa24.04■■□□□ 1.44
USB1-205ENST00000561743 GAPVD1Q14C86 1478 aa24.01■■□□□ 1.43
USB1-205ENST00000561743 WRNQ14191 1432 aaPredicted RBP eCLIP24.01■■□□□ 1.43
USB1-205ENST00000561743 SYNJ2O15056 1496 aa23.96■■□□□ 1.43
USB1-205ENST00000561743 CLASP1Q7Z460 1538 aa23.95■■□□□ 1.43
USB1-205ENST00000561743 CHMP7Q8WUX9 453 aaPredicted RBP23.91■■□□□ 1.42
USB1-205ENST00000561743 ARAP1Q96P48 1450 aa23.85■■□□□ 1.41
USB1-205ENST00000561743 ADAMTS12P58397 1594 aa23.84■■□□□ 1.41
USB1-205ENST00000561743 CYB5RLQ6IPT4 315 aa23.79■■□□□ 1.4
USB1-205ENST00000561743 GRIN2AQ12879 1464 aa23.77■■□□□ 1.4
USB1-205ENST00000561743 ERICH3Q5RHP9 1530 aa23.77■■□□□ 1.4
USB1-205ENST00000561743 CEP170Q5SW79 1584 aa23.71■■□□□ 1.39
USB1-205ENST00000561743 FHAD1B1AJZ9 1412 aa23.71■■□□□ 1.39
USB1-205ENST00000561743 NUP160Q12769 1436 aa23.67■■□□□ 1.38
USB1-205ENST00000561743 SHROOM2Q13796 1616 aa23.61■■□□□ 1.37
USB1-205ENST00000561743 ERCC6L2Q5T890 1561 aa23.6■■□□□ 1.37
USB1-205ENST00000561743 KIF27Q86VH2 1401 aa23.52■■□□□ 1.36
USB1-205ENST00000561743 CUL7Q14999 1698 aa23.51■■□□□ 1.35
USB1-205ENST00000561743 RUSC2Q8N2Y8 1516 aa23.51■■□□□ 1.35
USB1-205ENST00000561743 IGF1RP08069 1367 aa23.47■■□□□ 1.35
USB1-205ENST00000561743 TRHP20396 242 aaPredicted RBP23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms