RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 GOLGA6L4A6NEF3 574 aa12.99□□□□□ -0.33
GTF3C1-202ENST00000561623 MS4A1P11836 297 aa12.99□□□□□ -0.33
GTF3C1-202ENST00000561623 DCAF11Q8TEB1 546 aa12.99□□□□□ -0.33
GTF3C1-202ENST00000561623 NAP1L2Q9ULW6 460 aaPredicted RBP12.99□□□□□ -0.33
GTF3C1-202ENST00000561623 GBP4Q96PP9 640 aa12.98□□□□□ -0.33
GTF3C1-202ENST00000561623 KCNJ4P48050 445 aa12.98□□□□□ -0.33
GTF3C1-202ENST00000561623 SETD5Q9C0A6 1442 aa12.98□□□□□ -0.33
GTF3C1-202ENST00000561623 FOXD1Q16676 465 aa12.97□□□□□ -0.33
GTF3C1-202ENST00000561623 FGD1P98174 961 aa12.97□□□□□ -0.33
GTF3C1-202ENST00000561623 SLC4A3P48751 1232 aa12.97□□□□□ -0.33
GTF3C1-202ENST00000561623 ISY1Q9ULR0 285 aaKnown RBP12.97□□□□□ -0.33
GTF3C1-202ENST00000561623 OS9Q13438 667 aaPredicted RBP12.96□□□□□ -0.33
GTF3C1-202ENST00000561623 TIMELESSQ9UNS1 1208 aa12.96□□□□□ -0.33
GTF3C1-202ENST00000561623 PLEKHD1A6NEE1 506 aa12.96□□□□□ -0.34
GTF3C1-202ENST00000561623 SOGA1O94964 1423 aa12.96□□□□□ -0.34
GTF3C1-202ENST00000561623 APBB1O00213 710 aa12.96□□□□□ -0.34
GTF3C1-202ENST00000561623 NRDCO43847 1150 aa12.96□□□□□ -0.34
GTF3C1-202ENST00000561623 TMF1P82094 1093 aa12.96□□□□□ -0.34
GTF3C1-202ENST00000561623 HSP90AA2PQ14568 343 aaPredicted RBP12.96□□□□□ -0.34
GTF3C1-202ENST00000561623 GOLGA2Q08379 1002 aa12.95□□□□□ -0.34
GTF3C1-202ENST00000561623 MFAP1P55081 439 aaKnown RBP12.95□□□□□ -0.34
GTF3C1-202ENST00000561623 VSIG10Q8N0Z9 540 aa12.95□□□□□ -0.34
GTF3C1-202ENST00000561623 CHMP4BQ9H444 224 aaKnown RBP12.95□□□□□ -0.34
GTF3C1-202ENST00000561623 KANK4Q5T7N3 995 aaPredicted RBP12.95□□□□□ -0.34
GTF3C1-202ENST00000561623 FOXD4L1Q9NU39 408 aa12.94□□□□□ -0.34
GTF3C1-202ENST00000561623 KIAA2012Q0VF49 1180 aa12.94□□□□□ -0.34
GTF3C1-202ENST00000561623 SOX12O15370 315 aa12.93□□□□□ -0.34
GTF3C1-202ENST00000561623 RB1CC1Q8TDY2 1594 aa12.93□□□□□ -0.34
GTF3C1-202ENST00000561623 KTN1Q86UP2 1357 aaKnown RBP12.92□□□□□ -0.34
GTF3C1-202ENST00000561623 RSPH6AQ9H0K4 717 aa12.92□□□□□ -0.34
GTF3C1-202ENST00000561623 RAB3GAP2Q9H2M9 1393 aa12.92□□□□□ -0.34
GTF3C1-202ENST00000561623 KIF27Q86VH2 1401 aa12.92□□□□□ -0.34
GTF3C1-202ENST00000561623 MCCP23508 829 aa12.92□□□□□ -0.34
GTF3C1-202ENST00000561623 GSE1Q14687 1217 aa12.91□□□□□ -0.34
GTF3C1-202ENST00000561623 G3V3G9 751 aa12.9□□□□□ -0.34
GTF3C1-202ENST00000561623 CLSTN1O94985 981 aa12.9□□□□□ -0.34
GTF3C1-202ENST00000561623 DCAF8Q5TAQ9 597 aa12.9□□□□□ -0.34
GTF3C1-202ENST00000561623 PTMSP20962 102 aa12.9□□□□□ -0.34
GTF3C1-202ENST00000561623 ITPRIPQ8IWB1 547 aa12.9□□□□□ -0.34
GTF3C1-202ENST00000561623 CSB-PGBD3P0DP91 1061 aa12.89□□□□□ -0.35
GTF3C1-202ENST00000561623 RWDD1Q9H446 243 aaPredicted RBP12.89□□□□□ -0.35
GTF3C1-202ENST00000561623 MORC1Q86VD1 984 aa12.89□□□□□ -0.35
GTF3C1-202ENST00000561623 BAZ1BQ9UIG0 1483 aaKnown RBP12.88□□□□□ -0.35
GTF3C1-202ENST00000561623 PDE4AP27815 886 aa12.88□□□□□ -0.35
GTF3C1-202ENST00000561623 USP35Q9P2H5 1018 aa12.88□□□□□ -0.35
GTF3C1-202ENST00000561623 ZNF330Q9Y3S2 320 aaPredicted RBP12.88□□□□□ -0.35
GTF3C1-202ENST00000561623 POGKQ9P215 609 aa12.87□□□□□ -0.35
GTF3C1-202ENST00000561623 VPS8Q8N3P4 1428 aa12.87□□□□□ -0.35
GTF3C1-202ENST00000561623 FANCIQ9NVI1 1328 aa12.87□□□□□ -0.35
GTF3C1-202ENST00000561623 CYB5RLQ6IPT4 315 aa12.87□□□□□ -0.35
GTF3C1-202ENST00000561623 PAK3O75914 559 aaPredicted RBP12.86□□□□□ -0.35
GTF3C1-202ENST00000561623 TNNT3P45378 269 aaPredicted RBP12.86□□□□□ -0.35
GTF3C1-202ENST00000561623 SF3B2Q13435 895 aaKnown RBP12.85□□□□□ -0.35
GTF3C1-202ENST00000561623 PPP1R1BQ9UD71 204 aaPredicted RBP12.85□□□□□ -0.35
GTF3C1-202ENST00000561623 RALBP1Q15311 655 aa12.84□□□□□ -0.35
GTF3C1-202ENST00000561623 CALD1Q05682 793 aaKnown RBP12.84□□□□□ -0.35
GTF3C1-202ENST00000561623 CLUAP1Q96AJ1 413 aa12.84□□□□□ -0.35
GTF3C1-202ENST00000561623 PLIN1O60240 522 aa12.84□□□□□ -0.35
GTF3C1-202ENST00000561623 CCDC146Q8IYE0 955 aa12.84□□□□□ -0.35
GTF3C1-202ENST00000561623 PMFBP1Q8TBY8 1022 aa12.83□□□□□ -0.36
GTF3C1-202ENST00000561623 NOL8Q76FK4 1167 aaKnown RBP12.83□□□□□ -0.36
GTF3C1-202ENST00000561623 PRM3Q9NNZ6 103 aa12.83□□□□□ -0.36
GTF3C1-202ENST00000561623 FOXD4L5Q5VV16 416 aaPredicted RBP12.83□□□□□ -0.36
GTF3C1-202ENST00000561623 FOXD4L4Q8WXT5 416 aaPredicted RBP12.83□□□□□ -0.36
GTF3C1-202ENST00000561623 EXOC6Q8TAG9 804 aa12.83□□□□□ -0.36
GTF3C1-202ENST00000561623 SYAP1Q96A49 352 aaPredicted RBP12.82□□□□□ -0.36
GTF3C1-202ENST00000561623 PKD2Q13563 968 aa12.82□□□□□ -0.36
GTF3C1-202ENST00000561623 SAFB2Q14151 953 aaKnown RBP eCLIP12.82□□□□□ -0.36
GTF3C1-202ENST00000561623 EIF4G1Q04637 1599 aaKnown RBP12.82□□□□□ -0.36
GTF3C1-202ENST00000561623 ARHGAP35Q9NRY4 1499 aa12.82□□□□□ -0.36
GTF3C1-202ENST00000561623 HDGFP51858 240 aaKnown RBP12.82□□□□□ -0.36
GTF3C1-202ENST00000561623 IPO8O15397 1037 aaKnown RBP12.81□□□□□ -0.36
GTF3C1-202ENST00000561623 FHAD1B1AJZ9 1412 aa12.81□□□□□ -0.36
GTF3C1-202ENST00000561623 CFAP44Q96MT7 982 aa12.81□□□□□ -0.36
GTF3C1-202ENST00000561623 MPHOSPH9Q99550 1183 aa12.8□□□□□ -0.36
GTF3C1-202ENST00000561623 ROCK2O75116 1388 aaKnown RBP12.8□□□□□ -0.36
GTF3C1-202ENST00000561623 U2AF1L5P0DN76 240 aaPredicted RBP12.79□□□□□ -0.36
GTF3C1-202ENST00000561623 U2AF1Q01081 240 aaKnown RBP eCLIP12.79□□□□□ -0.36
GTF3C1-202ENST00000561623 KIAA1211Q6ZU35 1233 aa12.79□□□□□ -0.36
GTF3C1-202ENST00000561623 SRPK2P78362 688 aaKnown RBP12.79□□□□□ -0.36
GTF3C1-202ENST00000561623 FAM161AQ3B820 660 aa12.79□□□□□ -0.36
GTF3C1-202ENST00000561623 DDX11L8A8MPP1 907 aa12.78□□□□□ -0.36
GTF3C1-202ENST00000561623 SMC4Q9NTJ3 1288 aa12.78□□□□□ -0.36
GTF3C1-202ENST00000561623 ABCC8Q09428 1581 aa12.78□□□□□ -0.36
GTF3C1-202ENST00000561623 L3MBTL2Q969R5 705 aa12.77□□□□□ -0.37
GTF3C1-202ENST00000561623 CRBNQ96SW2 442 aa12.77□□□□□ -0.37
GTF3C1-202ENST00000561623 GNL2Q13823 731 aaKnown RBP12.76□□□□□ -0.37
GTF3C1-202ENST00000561623 RRP1P56182 461 aaKnown RBP12.76□□□□□ -0.37
GTF3C1-202ENST00000561623 CENPJQ9HC77 1338 aaPredicted RBP12.76□□□□□ -0.37
GTF3C1-202ENST00000561623 ANO8Q9HCE9 1232 aaPredicted RBP12.76□□□□□ -0.37
GTF3C1-202ENST00000561623 DHX57Q6P158 1386 aaKnown RBP12.75□□□□□ -0.37
GTF3C1-202ENST00000561623 CENPQQ7L2Z9 268 aaPredicted RBP12.75□□□□□ -0.37
GTF3C1-202ENST00000561623 DDX49Q9Y6V7 483 aaKnown RBP12.74□□□□□ -0.37
GTF3C1-202ENST00000561623 PDE3BQ13370 1112 aa12.74□□□□□ -0.37
GTF3C1-202ENST00000561623 TRIM6-TRIM34B2RNG4 842 aa12.74□□□□□ -0.37
GTF3C1-202ENST00000561623 CCDC88BA6NC98 1476 aa12.73□□□□□ -0.37
GTF3C1-202ENST00000561623 GGT6Q6P531 493 aa12.73□□□□□ -0.37
GTF3C1-202ENST00000561623 FAM13BQ9NYF5 915 aa12.73□□□□□ -0.37
GTF3C1-202ENST00000561623 NLRP13Q86W25 1043 aa12.73□□□□□ -0.37
GTF3C1-202ENST00000561623 FOXD4L6Q3SYB3 417 aaPredicted RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms